BAC Information

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BAC

Clone NameB6Ng01-117P10
Chromosome12 (Build37)
Map Location 105,098,099 - 105,252,591
singlet/doubletdoublet
Overlap geneSerpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9
Upstream geneBtbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801
Downstream geneSerpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn, 4831426I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117P10.bB6Ng01-117P10.g
ACCDH922567DH922568
length1,136305
definitionDH922567|Mus musculus domesticus DNA, BAC clone: B6Ng01-117P10, 5' end.DH922568|Mus musculus domesticus DNA, BAC clone: B6Ng01-117P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,098,099 - 105,099,254)(105,252,287 - 105,252,591)
sequence
gaattctctttactgtgatgtgccacaggctactagtctacatccccatg
ctctcatcatatttgggaagctgaggccacatctatgaagaatcttcagg
cagccagaccacctagtcagctattagttcaataatggaatcaccattct
ttttattttactcttttgagagaacctcatatgtctcaggctagccttaa
actaaccatctagatgaggatggccctgaacatctgatccttctacttct
agagtgttgggatgaaaggtgtgtaccaccatgacctctttatgtagctc
tgggcttcatgtgtcttatgtgaacacactaccaagagagctacactccc
tagacccatagctagaattatcatcttaatacaatgaaaccctcaagttt
gggatctgcaaacctgaagggggaatgttgaaaacaagaaatattgaatt
ttgcctgcccttgatctctaaaaagtatctttccaacgttatagcacaac
aaatcacagatgtctctctacctaccaccgtgctttctgccctttcactg
taaataatctggagagccgaacacggattgcacagtacatgttgatgttt
tcataaacaggctggtgtgttagggctggagaggacactgaattgagttc
tgtatttttccattcctgatgtttttgttacttcttgtttgaatttggcg
agccccttggaaatttcccaccttcatcaagaagctgggccttcacaggg
tgacaagaaaacataccaagtgacctcaagtcagaggctgacagcaaggc
agagatcttcctgtgtccatctccccgggggctggggttgattacaaaag
ctcacctccttattcggtttgtgccttggcttctaaggagcaaagtctgg
tcctcagacttgggtgttaagcattggactgactgaactatttcctcatc
ccagacattggacttagtgccaaggatctctgtttagcaggttggcggaa
ggggatgagatgacatgctctgtttggggctgctgaggcttcaaggagga
agccagcatgggggagtaaggggccctgctaggttgtaccctctcatctt
ccctttctcttcattggtgaaggctgagcctggaga
aaggagtcaagattcaggagttctgggctgtgcaatggtgatagcgttga
agaggccccattgtggcagttgaaagacaggtcagagcattggggggggg
gtaggcaggggagttagtgagactcttttgggagacagtaccacctaaca
agagttatagcagaacctttatctgcatctgcattggtacttccaccagt
ctacctgacagtcaactgtgcgtagactcttcctcattcttcatgtctta
acttgaggtaaattgaccaggctgatgatggatgacactggtaattaggg
agagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_105098099_105099254
seq2: B6Ng01-117P10.b_44_1179

seq1  GAATTCTCTTTACTGTGATGTGCCACAGGCTACTAGTCTACATCCCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTACTGTGATGTGCCACAGGCTACTAGTCTACATCCCCATG  50

seq1  CTCTCATCATATTTGGGAAGCTGAGGCCACATCTATGAAGAATCTTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATCATATTTGGGAAGCTGAGGCCACATCTATGAAGAATCTTCAGG  100

seq1  CAGCCAGACCACCTAGTCAGCTATTAGTTCAATAATGGAATCACCATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGACCACCTAGTCAGCTATTAGTTCAATAATGGAATCACCATTCT  150

seq1  TTTTATTTTACTCTTTTGAGAGAACCTCATATGTCTCAGGCTAGCCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTACTCTTTTGAGAGAACCTCATATGTCTCAGGCTAGCCTTAA  200

seq1  ACTAACCATCTAGATGAGGATGGCCCTGAACATCTGATCCTTCTACTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCATCTAGATGAGGATGGCCCTGAACATCTGATCCTTCTACTTCT  250

seq1  AGAGTGTTGGGATGAAAGGTGTGTACCACCATGACCTCTTTATGTAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTGGGATGAAAGGTGTGTACCACCATGACCTCTTTATGTAGCTC  300

seq1  TGGGCTTCATGTGTCTTATGTGAACACACTACCAAGAGAGCTACACTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCATGTGTCTTATGTGAACACACTACCAAGAGAGCTACACTCCC  350

seq1  TAGACCCATAGCTAGAATTATCATCTTAATACAATGAAACCCTCAAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCATAGCTAGAATTATCATCTTAATACAATGAAACCCTCAAGTTT  400

seq1  GGGATCTGCAAACCTGAAGGGGGAATGTTGAAAACAAGAAATATTGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTGCAAACCTGAAGGGGGAATGTTGAAAACAAGAAATATTGAATT  450

seq1  TTGCCTGCCCTTGATCTCTAAAAAGTATCTTTCCAACGTTATAGCACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGCCCTTGATCTCTAAAAAGTATCTTTCCAACGTTATAGCACAAC  500

seq1  AAATCACAGATGTCTCTCTACCTACCACCGTGCTTTCTGCCCTTTCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAGATGTCTCTCTACCTACCACCGTGCTTTCTGCCCTTTCACTG  550

seq1  TAAATAATCTGGAGAGCCGAACACGGATTGCACAGTACATGTTGATGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATCTGGAGAGCCGAACACGGATTGCACAGTACATGTTGATGTTT  600

seq1  TCATAAACAGGCTGGTGTGTTAGGGCTGGAGAGGACACTGAATTGAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACAGGCTGGTGTGTTAGGGCTGGAGAGGACACTGAATTGAGTTC  650

seq1  TGTATTTTTCCATTCCTGATGTTTTTGTTACTTCTTGTTTGAATTTGGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTTCCATTCCTGATGTTTTTGTTACTTCTTGTTTGAATTTGGCG  700

seq1  AGCCCCTTGGAAATTTCCCACCTTCATCAAGAAGCTGGGCCTTCACAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTTGGAAATTTCCCACCTTCATCAAGAAGCTGGGCCTTCACAGGG  750

seq1  TGACAAGAAAACATACCAAGTGACCTCAAGTCAGAGGCTGACAGCAAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGAAAACATACCAAGTGACCTCAAGTCAGAGGCTGACAGCAAGGC  800

seq1  AGAGATCTTCCTGTGTCCATCTCCCCGGGGGCTGGGGTTGATTACAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTTCCTGTGTCCATCTCCCCGGGGGCTGGGGTTGATTACAAAAG  850

seq1  CTCACCTCCTTATTCGGTTTGTGCCTTGGCTTCTAAGGAGCAAAGTCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTCCTTATTCGGTTTGTGCCTTGGCTTCTAAGGAGCAAAGTCTGG  900

seq1  TCCTCAGACTTGGGTGTTAAGCATTGGACTGACTGAACTATTTCCTCATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGACTTGGGTGTTAAGCATTGGACTGACTGAACTATTTCCTCATC  950

seq1  CCAGACATTGGACTTAGTGCCAAGGATCTCTGTTTAGCAGGGTTGGCGGG  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  CCAGACATTGGACTTAGTGCCAAGGATCTCTGTTTAGCA-GGTTGGCGG-  998

seq1  AAGGGGGATGAGATGACATGCTCTGTTTGGGGGCTGCTGA-GCTTCAAGG  1049
       | ||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  -AAGGGGATGAGATGACATGCTCTGTTT-GGGGCTGCTGAGGCTTCAAGG  1046

seq1  AGGGAAGGCCAGCATGGGGAAGTAGAGGGGGCCCTGCTAGGGTGGTCACA  1099
      |||  | |||||||||||| |||  | |||||||||||||| ||   || 
seq2  AGG--AAGCCAGCATGGGGGAGT--AAGGGGCCCTGCTAGGTTG--TACC  1090

seq1  CTCTCTTCCATCTTTCCCTTTTCCTCCTTCGATGGTGAAGGGGCTGAGGC  1149
      ||||| ||     ||||||||  || ||||  |||||||  |||||| ||
seq2  CTCTCATC-----TTCCCTTT--CT-CTTCATTGGTGAA--GGCTGA-GC  1129

seq1  CTGGAGA  1156
      |||||||
seq2  CTGGAGA  1136

seq1: chr12_105252287_105252591
seq2: B6Ng01-117P10.g_72_376 (reverse)

seq1  CCTCTCCCTCATTCCCAGTGTCATCCATCATCAGCCTGGTCAATTTACCT  50
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCTAATTACCAGTGTCATCCATCATCAGCCTGGTCAATTTACCT  50

seq1  CAAGTTAAGACATGAAGAATGAGGAAGAGTCTACGCACAGTTGACTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAAGACATGAAGAATGAGGAAGAGTCTACGCACAGTTGACTGTCA  100

seq1  GGTAGACTGGTGGAAGTACCAATGCAGATGCAGATAAAGGTTCTGCTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACTGGTGGAAGTACCAATGCAGATGCAGATAAAGGTTCTGCTATA  150

seq1  ACTCTTGTTAGGTGGTACTGTCTCCCAAAAGAGTCTCACTAACTCCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTTAGGTGGTACTGTCTCCCAAAAGAGTCTCACTAACTCCCCTG  200

seq1  CCTACCCCCCCCCCAATGCTCTGACCTGTCTTTCAACTGCCACAATGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCCCCCCCCAATGCTCTGACCTGTCTTTCAACTGCCACAATGGGG  250

seq1  CCTCTTCAACGCTATCACCATTGCACAGCCCAGAACTCCTGAATCTTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCAACGCTATCACCATTGCACAGCCCAGAACTCCTGAATCTTGAC  300

seq1  TCCTT  305
      |||||
seq2  TCCTT  305