BAC Information

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BAC

Clone NameB6Ng01-118B15
Chromosome12 (Build37)
Map Location 55,341,606 - 55,479,419
singlet/doubletdoublet
Overlap genenone
Upstream geneNpas3, Egln3
Downstream geneEG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118B15.bB6Ng01-118B15.g
ACCDH922670DH922671
length747867
definitionDH922670|Mus musculus domesticus DNA, BAC clone: B6Ng01-118B15, 5' end.DH922671|Mus musculus domesticus DNA, BAC clone: B6Ng01-118B15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,341,606 - 55,342,352)(55,478,903 - 55,479,419)
sequence
gaattcctaggaagttgtttgtagctaacttaatctctgctgtatttttg
cattgagatgggctggatttacttattgtggcatctggtccaagtttttc
tatcctcatttgattttcacctctcttcttttaaccagaggtaagcagaa
atgcagccccactaccacagctgtgcagttgactatcccacatttaggga
aatcatagcacagcccaaatgcaagggaaacaccatgtcctgggaaaaac
acctgtgtgatcattttctatttttgtagtattgttaatctctgaaataa
atgatttagaattttaccaattgacaacattggtactttactattgaatc
atttttgcccgaaatacttcacatgacaatccacatgccatccccaaagt
gcacagatgatagaatcagaacgatagggatccgctgactacagcctgtg
gccagtcagcagtagggcagtatgggacagttgggacacaatacaagtct
gactcagtttcctaatctataaaaacaagggcacggcccaagatggcttt
ggtcccatttgactcttgtattttttaaaaatgtcttgtcaatgaaacca
caagggtctcaacgaactgaaatctcatagcgtctttcccaagggtctca
atgaactgaaatctcatagcgtctttcccttatttggttggtacttgcaa
atttggatggtaagattggttttgggtttgggggtttgttttggttg
gaattcatttgtaccgctgttaagaaaaaaatgtgtttgctgtctttttc
tatgagtcaagggcctaaggtcaaacaatgctgattggtgagataatcaa
aagagaacctagggtgaatgattgaactgatatataaataaaaggtaggg
ctttggtctgtgagagctgagctgtctggaaatcttcagaaagctgtctt
gagcagaacataggctgtcagcttgtacacatgatttgactttgacaatg
ctcctgaataccccttcctcataaccgctttccaaactaaggctggtcct
ctgcagtacgaaatgatgtctcacagttgttttgaatttgaagttccctg
attacctgtgatggggaatgtgtcttctggtgactgctagccagtcatat
atatgctaagaagtgtctgttgaaattgtttgcccattttcattggattc
tttaatctttggtattaagatggtgagtttcttatatgttctgagcatta
acctcttgtcaaatgcatgatgtgtttgttagctccttttctttatgctg
tgaccaaaatatctcacaaaaactatgtaagggaggaaaggaggaggagg
ggcttggctcacagtttcagagggtctctcagtctatcagggcctaccca
tccatagcagtgagaatttgtgacagctgctttcacaatgtggtcgacca
ggaaatggaatcaaaggcaggtacaacctccaaactctgatcagaagctt
ccctctgcctggaagaccccaggtctcaaaatttcccatgattttataaa
gagtgcagcatctggagaatcaagtgttcaaatgcatgaacctctggtgt
gtgtgtggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_55341606_55342352
seq2: B6Ng01-118B15.b_46_792

seq1  GAATTCCTAGGAAGTTGTTTGTAGCTAACTTAATCTCTGCTGTATTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGAAGTTGTTTGTAGCTAACTTAATCTCTGCTGTATTTTTG  50

seq1  CATTGAGATGGGCTGGATTTACTTATTGTGGCATCTGGTCCAAGTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGATGGGCTGGATTTACTTATTGTGGCATCTGGTCCAAGTTTTTC  100

seq1  TATCCTCATTTGATTTTCACCTCTCTTCTTTTAACCAGAGGTAAGCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCATTTGATTTTCACCTCTCTTCTTTTAACCAGAGGTAAGCAGAA  150

seq1  ATGCAGCCCCACTACCACAGCTGTGCAGTTGACTATCCCACATTTAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCCCCACTACCACAGCTGTGCAGTTGACTATCCCACATTTAGGGA  200

seq1  AATCATAGCACAGCCCAAATGCAAGGGAAACACCATGTCCTGGGAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAGCACAGCCCAAATGCAAGGGAAACACCATGTCCTGGGAAAAAC  250

seq1  ACCTGTGTGATCATTTTCTATTTTTGTAGTATTGTTAATCTCTGAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTGATCATTTTCTATTTTTGTAGTATTGTTAATCTCTGAAATAA  300

seq1  ATGATTTAGAATTTTACCAATTGACAACATTGGTACTTTACTATTGAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTAGAATTTTACCAATTGACAACATTGGTACTTTACTATTGAATC  350

seq1  ATTTTTGCCCGAAATACTTCACATGACAATCCACATGCCATCCCCAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCCCGAAATACTTCACATGACAATCCACATGCCATCCCCAAAGT  400

seq1  GCACAGATGATAGAATCAGAACGATAGGGATCCGCTGACTACAGCCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGATGATAGAATCAGAACGATAGGGATCCGCTGACTACAGCCTGTG  450

seq1  GCCAGTCAGCAGTAGGGCAGTATGGGACAGTTGGGACACAATACAAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCAGCAGTAGGGCAGTATGGGACAGTTGGGACACAATACAAGTCT  500

seq1  GACTCAGTTTCCTAATCTATAAAAACAAGGGCACGGCCCAAGATGGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTTTCCTAATCTATAAAAACAAGGGCACGGCCCAAGATGGCTTT  550

seq1  GGTCCCATTTGACTCTTGTATTTTTTAAAAATGTCTTGTCAATGAAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCATTTGACTCTTGTATTTTTTAAAAATGTCTTGTCAATGAAACCA  600

seq1  CAAGGGTCTCAACGAACTGAAATCTCATAGCGTCTTTCCCAAGGGTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTCTCAACGAACTGAAATCTCATAGCGTCTTTCCCAAGGGTCTCA  650

seq1  ATGAACTGAAATCTCATAGCGTCTTTCCCTTATTTGGTTGGTACTTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGAAATCTCATAGCGTCTTTCCCTTATTTGGTTGGTACTTGCAA  700

seq1  ATTTGGATGGTAAGATTGGTTTTGGGTTTGGGGGTTTGTTTTGGTTG  747
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGATGGTAAGATTGGTTTTGGGTTTGGGGGTTTGTTTTGGTTG  747

seq1: chr12_55478903_55479419
seq2: B6Ng01-118B15.g_417_935 (reverse)

seq1  CCCCCCCCCCACACACACA-CAGAGGTTCATGCATTTGAACACTTGATTC  49
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCACACACACACCAGAGGTTCATGCATTTGAACACTTGATTC  50

seq1  TCCAGATGCTGCACTCTTTATAAAATCATGGGAAATTTTGAGACCTGGGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATGCTGCACTCTTTATAAAATCATGGGAAATTTTGAGACCTGGGG  100

seq1  TCTTCCAGGCAGA-GGAAGCTTCTGATCAGAGTTTGGAGGTTGTACCTGC  148
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGGCAGAGGGAAGCTTCTGATCAGAGTTTGGAGGTTGTACCTGC  150

seq1  CTTTGATTCCATTTCCTGGTCGACCACATTGTGAAAGCAGCTGTCACAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTCCATTTCCTGGTCGACCACATTGTGAAAGCAGCTGTCACAAA  200

seq1  TTCTCACTGCTATGGATGGGTAGGCCCTGATAGACTGAGAGACCCTCTGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTGCTATGGATGGGTAGGCCCTGATAGACTGAGAGACCCTCTGA  250

seq1  AACTGTGAGCCAAGCCCCTCCTCCTCCTTTCCTCCCTTACATAGTTTTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAGCCAAGCCCCTCCTCCTCCTTTCCTCCCTTACATAGTTTTTG  300

seq1  TGAGATATTTTGGTCACAGCATAAAGAAAAGGAGCTAACAAACACATCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATATTTTGGTCACAGCATAAAGAAAAGGAGCTAACAAACACATCAT  350

seq1  GCATTTGACAAGAGGTTAATGCTCAGAACATATAAGAAACTCACCATCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGACAAGAGGTTAATGCTCAGAACATATAAGAAACTCACCATCTT  400

seq1  AATACCAAAGATTAAAGAATCCAATGAAAATGGGCAAACAATTTCAACAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAAAGATTAAAGAATCCAATGAAAATGGGCAAACAATTTCAACAG  450

seq1  ACACTTCTTAGCATATATATGACTGGCTAGCAGTCACCAGAAGACACATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTTAGCATATATATGACTGGCTAGCAGTCACCAGAAGACACATT  500

seq1  CCCCATCACAGGTAATCAG  517
      |||||||||||||||||||
seq2  CCCCATCACAGGTAATCAG  519