BAC Information

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BAC

Clone NameB6Ng01-118H05
Chromosome12 (Build37)
Map Location 117,993,019 - 118,137,023
singlet/doubletdoublet
Overlap genePtprn2
Upstream geneIgh, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, LOC627375
Downstream geneLOC432713, LOC100042461, Rapgef5, A930023M06Rik, Cdca7l, Dnahc11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118H05.bB6Ng01-118H05.g
ACCDH922925DH922926
length1,167916
definitionDH922925|Mus musculus domesticus DNA, BAC clone: B6Ng01-118H05, 5' end.DH922926|Mus musculus domesticus DNA, BAC clone: B6Ng01-118H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,135,848 - 118,137,023)(117,993,019 - 117,993,726)
sequence
gaattcccagacctcatgggcttttccatcatagcagtccccaagactgg
gcactgtggtttcctaatgtctctagggaacctgtgcaaagtacccatca
atgagggccagtgtcactgaaaatgagccttatggtacccaaaaatcccc
tagttgaagtctagcacctgggcagacaaaaatgtcacacgaattttagg
caatgacattggacatttaggaacaggtttcatagatactgtctctgtgt
ggtttttgctcatgaagaaagaaacaactggccttgcatgctcaggagaa
accaaggacatggacttgtgcctggtgcttgaccccatgttgtccaacag
ctggttagttatagacaatgcttacaaattagagaacgattagcctaggg
tgttgcctagtttctttgttgggaagctatgcctctgatgcctgtaatca
ctggttctatatagaacccagagatccccttgctcctttgccaacatggc
atttatggtttttaagacatgggacacccctacatcctatgtgtcgaaga
accaactcacttagaaaatcctccctgaggagcctccttggttgagtggg
tgtgatcagattccatgggattttttttgaggtaatccaaataacttgct
cagaatgcaaagggtcttcaggaaaggaaaagagccagaccgaaatgctc
agtgagtaagggtcattgcaagatgatttgcagagcccgagaaggaatct
gctttggtgatgttgacagtgaatcttgggacagaagcagtgatgcacct
acctggactaggatctcctgggccaactaccattccaaagtcactcactc
tggctcacacaatgtttgagttctcatcagaaacaaatcaaaccatttga
atcttctctaagaaatagccatagctatcaaacctcatgggaagttagtt
ctgttgtcacacacagatctactgtgacacccaggtcgctgtgcaggata
tcagagcagctacctgggttgtccactcttaggagtctagcacagcaagg
gatgtctgagctgcagtcagttgactttgacatcaaatgtacagaatagt
agtcctagcttataagtcccaacttctaagctaagcctccctcagtgaat
gctgatgacatagacct
gaattctcatgccaaaccctttctgtctctgacttgtagattaataagtg
agctctcagctgtccctgctgccatgccctggctctgccaccgtgcattc
tgtctggacccttaagcccaattcagcatgttctttcacaagttgccctg
atcatggtgttttgtaccagcaatagaatagtgattaacaaacagaatag
tgattaataaagaggctgacactagggagtgggctgttgctgtgacaagc
ctgaccatgcaggtttttattttttttattatttattttgaagaatgcaa
aagactttgggcatttggactaggaaaatggttgaaggttgtaagcagag
tttaatggaccatcccaggctggaagacattactgctgagagaaatgcaa
gctgtgaggggccagctccagagattttagaagagagcaatattagtaac
tggctaagtgaccattcttgtcatattttggcaaagaatatagcttactt
ctgcccttgaactaagaattttcctgaggctaaattgaaaagcaatggat
taattcctctagtagaggaagtgtcaaagcagcctgatactgactctgtt
gtgtggttattagtaatgcctctcatgcagatttgcaatgaaaaggagca
ggcacagcacaaaagaaaggaaaaatgtacagtttgaaaaaaaaagagta
caaggaaattttatgttggggctaaggtatgtgctgacaggataaggagg
ttgaagagagatctgatctaaaaaatgggaggggtactctcatggcaaga
ccccagccagttaaactttgactttctgctagacaaaaaaacccaaagaa
gtttcttcttcttaaaaagggacacatttgtgattcatgggaggccaggc
tacatctcaagtggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_118135848_118137023
seq2: B6Ng01-118H05.b_48_1214 (reverse)

seq1  AGGTCTA-GTCATCAGCATTCACTGA-GGAGCCTGTAAGCTTAGAAGTTG  48
      ||||||| |||||||||||||||||| |||| |  | |||||||||||||
seq2  AGGTCTATGTCATCAGCATTCACTGAGGGAGGC--TTAGCTTAGAAGTTG  48

seq1  TGACCTAT-AGCTTAAGGACTTACTTATTCTGTACATTTGGATGTCAAAG  97
       ||| ||| ||||  ||||| ||| |||||||||||||| ||||||||||
seq2  GGACTTATAAGCT--AGGAC-TAC-TATTCTGTACATTT-GATGTCAAAG  93

seq1  TCAACTGACTTGCAGCTCAGGACATCCCTTGCTGTGCTAGACT-CTAAGA  146
      ||||||||| ||||||||| ||||||||||||||||||||||| ||||||
seq2  TCAACTGAC-TGCAGCTCA-GACATCCCTTGCTGTGCTAGACTCCTAAGA  141

seq1  GTGGAACAACCCAGGTAGCTGCTCTGATATCCTGCACAGCGACCTGGGTT  196
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGG-ACAACCCAGGTAGCTGCTCTGATATCCTGCACAGCGACCTGGGT-  189

seq1  GTTCACAGTTAGATCTGTGTGTGACAACAGAACTAACTTCCCATGAGGTT  246
        |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  -GTCACAG-TAGATCTGTGTGTGACAACAGAACTAACTTCCCATGAGGTT  237

seq1  TGATAGCTATGGCTATTTCTTAGAGAAGATTCAAATGGTTTGATTTGTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCTATGGCTATTTCTTAGAGAAGATTCAAATGGTTTGATTTGTTT  287

seq1  CTGATGAGAACTCAAACATTGTGTGAGCCAGAGTGAGTGACTTTGGAATG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAGAACTCAAACATTGTGTGAGCCAGAGTGAGTGACTTTGGAATG  337

seq1  GTAGTTGGCCCAGGAGATCCTAGTCCAGGTAGGTGCATCACTGCTTCTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGGCCCAGGAGATCCTAGTCCAGGTAGGTGCATCACTGCTTCTGT  387

seq1  CCCAAGATTCACTGTCAACATCACCAAAGCAGATTCCTTCTCGGGCTCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGATTCACTGTCAACATCACCAAAGCAGATTCCTTCTCGGGCTCTG  437

seq1  CAAATCATCTTGCAATGACCCTTACTCACTGAGCATTTCGGTCTGGCTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATCTTGCAATGACCCTTACTCACTGAGCATTTCGGTCTGGCTCT  487

seq1  TTTCCTTTCCTGAAGACCCTTTGCATTCTGAGCAAGTTATTTGGATTACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCCTGAAGACCCTTTGCATTCTGAGCAAGTTATTTGGATTACC  537

seq1  TCAAAAAAAATCCCATGGAATCTGATCACACCCACTCAACCAAGGAGGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAATCCCATGGAATCTGATCACACCCACTCAACCAAGGAGGCT  587

seq1  CCTCAGGGAGGATTTTCTAAGTGAGTTGGTTCTTCGACACATAGGATGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGAGGATTTTCTAAGTGAGTTGGTTCTTCGACACATAGGATGTA  637

seq1  GGGGTGTCCCATGTCTTAAAAACCATAAATGCCATGTTGGCAAAGGAGCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTCCCATGTCTTAAAAACCATAAATGCCATGTTGGCAAAGGAGCA  687

seq1  AGGGGATCTCTGGGTTCTATATAGAACCAGTGATTACAGGCATCAGAGGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATCTCTGGGTTCTATATAGAACCAGTGATTACAGGCATCAGAGGC  737

seq1  ATAGCTTCCCAACAAAGAAACTAGGCAACACCCTAGGCTAATCGTTCTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTCCCAACAAAGAAACTAGGCAACACCCTAGGCTAATCGTTCTCT  787

seq1  AATTTGTAAGCATTGTCTATAACTAACCAGCTGTTGGACAACATGGGGTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTAAGCATTGTCTATAACTAACCAGCTGTTGGACAACATGGGGTC  837

seq1  AAGCACCAGGCACAAGTCCATGTCCTTGGTTTCTCCTGAGCATGCAAGGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCAGGCACAAGTCCATGTCCTTGGTTTCTCCTGAGCATGCAAGGC  887

seq1  CAGTTGTTTCTTTCTTCATGAGCAAAAACCACACAGAGACAGTATCTATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTTTCTTTCTTCATGAGCAAAAACCACACAGAGACAGTATCTATG  937

seq1  AAACCTGTTCCTAAATGTCCAATGTCATTGCCTAAAATTCGTGTGACATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGTTCCTAAATGTCCAATGTCATTGCCTAAAATTCGTGTGACATT  987

seq1  TTTGTCTGCCCAGGTGCTAGACTTCAACTAGGGGATTTTTGGGTACCATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGCCCAGGTGCTAGACTTCAACTAGGGGATTTTTGGGTACCATA  1037

seq1  AGGCTCATTTTCAGTGACACTGGCCCTCATTGATGGGTACTTTGCACAGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCATTTTCAGTGACACTGGCCCTCATTGATGGGTACTTTGCACAGG  1087

seq1  TTCCCTAGAGACATTAGGAAACCACAGTGCCCAGTCTTGGGGACTGCTAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAGAGACATTAGGAAACCACAGTGCCCAGTCTTGGGGACTGCTAT  1137

seq1  GATGGAAAAGCCCATGAGGTCTGGGAATTC  1176
      ||||||||||||||||||||||||||||||
seq2  GATGGAAAAGCCCATGAGGTCTGGGAATTC  1167

seq1: chr12_117993019_117993726
seq2: B6Ng01-118H05.g_69_776

seq1  GAATTCTCATGCCAAACCCTTTCTGTCTCTGACTTGTAGATTAATAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGCCAAACCCTTTCTGTCTCTGACTTGTAGATTAATAAGTG  50

seq1  AGCTCTCAGCTGTCCCTGCTGCCATGCCCTGGCTCTGCCACCGTGCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCAGCTGTCCCTGCTGCCATGCCCTGGCTCTGCCACCGTGCATTC  100

seq1  TGTCTGGACCCTTAAGCCCAATTCAGCATGTTCTTTCACAAGTTGCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGACCCTTAAGCCCAATTCAGCATGTTCTTTCACAAGTTGCCCTG  150

seq1  ATCATGGTGTTTTGTACCAGCAATAGAATAGTGATTAACAAACAGAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTGTTTTGTACCAGCAATAGAATAGTGATTAACAAACAGAATAG  200

seq1  TGATTAATAAAGAGGCTGACACTAGGGAGTGGGCTGTTGCTGTGACAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATAAAGAGGCTGACACTAGGGAGTGGGCTGTTGCTGTGACAAGC  250

seq1  CTGACCATGCAGGTTTTTATTTTTTTTATTATTTATTTTGAAGAATGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCATGCAGGTTTTTATTTTTTTTATTATTTATTTTGAAGAATGCAA  300

seq1  AAGACTTTGGGCATTTGGACTAGGAAAATGGTTGAAGGTTGTAAGCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTGGGCATTTGGACTAGGAAAATGGTTGAAGGTTGTAAGCAGAG  350

seq1  TTTAATGGACCATCCCAGGCTGGAAGACATTACTGCTGAGAGAAATGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGACCATCCCAGGCTGGAAGACATTACTGCTGAGAGAAATGCAA  400

seq1  GCTGTGAGGGGCCAGCTCCAGAGATTTTAGAAGAGAGCAATATTAGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGGGGCCAGCTCCAGAGATTTTAGAAGAGAGCAATATTAGTAAC  450

seq1  TGGCTAAGTGACCATTCTTGTCATATTTTGGCAAAGAATATAGCTTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAGTGACCATTCTTGTCATATTTTGGCAAAGAATATAGCTTACTT  500

seq1  CTGCCCTTGAACTAAGAATTTTCCTGAGGCTAAATTGAAAAGCAATGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTTGAACTAAGAATTTTCCTGAGGCTAAATTGAAAAGCAATGGAT  550

seq1  TAATTCCTCTAGTAGAGGAAGTGTCAAAGCAGCCTGATACTGACTCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTCTAGTAGAGGAAGTGTCAAAGCAGCCTGATACTGACTCTGTT  600

seq1  GTGTGGTTATTAGTAATGCCTCTCATGCAGATTTGCAATGAAAAGGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTATTAGTAATGCCTCTCATGCAGATTTGCAATGAAAAGGAGCA  650

seq1  GGCACAGCACAAAAGAAAGGAAAAATGTACAGTTTGAAAAAAAAAGAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGCACAAAAGAAAGGAAAAATGTACAGTTTGAAAAAAAAAGAGTA  700

seq1  CAAGGAAA  708
      ||||||||
seq2  CAAGGAAA  708