BAC Information

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BAC

Clone NameB6Ng01-118L11
Chromosome2 (Build37)12 (Build37)
Map Location 97,501,551 - 97,502,66190,150,858 - 90,151,279
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043267, Lrrc4c
Downstream geneLOC621146, LOC664974, LOC100042886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118L11.bB6Ng01-118L11.g
ACCDH923121DH923122
length1,130768
definitionDH923121|Mus musculus domesticus DNA, BAC clone: B6Ng01-118L11, 5' end.DH923122|Mus musculus domesticus DNA, BAC clone: B6Ng01-118L11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(97,501,551 - 97,502,661)(90,150,858 - 90,151,279)
sequence
gaattctttgtatatattggatattagccctctatcagatgtaggattgg
taaagatcttttcccaatgttttggttgctgttttgtcccattgacagtg
ttctttgcctttgctttgcaattttatgatatctcatttgcctacttttg
atcttagagcataagctattagcattccgttcaagaaattttcccctgtt
cccatgtggttgtctcttttcccacactttctcttctattagtttctgtg
tatccagatttatgtagaggctagaggcctttgattcacttggacttgaa
ctttgtacaatgagataagaatggatcaacttcactaactacttttagca
gcaggacaaagaaagtcataaaacagcacacttttcaaatacttagatag
tgggtacatcagacagacagggcacagcaaaatgtgtatgtagttagaag
accctttcatggacctcaaattctatctgactttctcttcaggatttagg
ttggttgtaaaataggaatttctaagtttcaagtgattcactgagtcata
cgaaaaaaaaaataggtcatccatacaagtaacaaaaactaaatattaaa
gagtcaaagggcactctttgatattctggctctagactttgaaactccaa
gctcttcacattaaactttgaagtcacagcttcttttctttttctttcac
ttttcttttcttttcttttctcttcttttcttttcttttcttttcttttc
ttttcttttcttttcttccttttcaaattggaagtcacatacaacaagtt
ttcatatgtggcatgatgatttatggtaattttctttgtaatacttatgc
ccaatgtaaattcacttagtgtcagtaactaagtcacaatctcctgtggc
acacatgggactcaagcttcatatggctgcaggtttggatataaccctct
gttagatgtagggttattgaaatctttttcccaatctgtagctgccattt
tgtcctgttgacagtgtccttgcttacaaaagctagaaagtagctggata
ttaaatagctttaagaaatcagaggttcttctttataaaatgataatgtg
ttgagagaattagagaacacaccctgcaaa
gaattctcacctgaggaataccgaatggctgggaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agattctggcaaggatgtagagatagaggaaaatcctccattgttggtag
gattgccagcttatataactactctggaaatcagtctggtggttcctcag
aaaattggacatagtactaccggaggatcccgcaataccactcctgggca
tatattcagaagatgttccagccggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtgatacatttacacaatgg
agctattaaaaagaaataattaatgaaattcctaggcaaatggatggacc
tggaggacatcatcctgagtgaggtaacacaatcacaaaagaattcacac
aatatgttctcactgataagtggatattagcccagaaacgtagaataccc
aagatacaagatacaatttgcaaaacgcatgaaactcaagaagaatgaag
accaaagtgtggacactttgccccttcttagaattgggaacaaaacaccc
ttgaaaggggttacagagacaaagtttggagctgagacgaaaggatggac
catctagagactaccata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_97501551_97502661
seq2: B6Ng01-118L11.b_77_1175 (reverse)

seq1  TGTGCAGGGTGTTGTTTCTCTAATTTCTTCTCAACACATTTATCATTTTA  50
      | ||||||||||   ||||||||||   |||||||||| |||||||||||
seq2  TTTGCAGGGTGT--GTTCTCTAATT--CTCTCAACACA-TTATCATTTTA  45

seq1  TAAAGGAGAACCTCTGATTTCTTTGAGCTAATTTTATATCCAGCTACTTT  100
      ||||| |||||||||||||||||  |||| |||| |||||||||||||||
seq2  TAAAGAAGAACCTCTGATTTCTTAAAGCT-ATTTAATATCCAGCTACTTT  94

seq1  CCAAGGCTTTTGTAAGGCAAAGGACACTGTCAACAGGACAAAATGGCAGC  150
      | |  |||||||||||   |||||||||||||||||||||||||||||| 
seq2  CTA--GCTTTTGTAAG--CAAGGACACTGTCAACAGGACAAAATGGCAG-  139

seq1  CTACAGATTGGGAAAAGATTTTCAATAACCCTACATCTAACAGAGGGTTA  200
      ||||||||||||||||   |||||||||||||||||||||||||||||| 
seq2  CTACAGATTGGGAAAAAGATTTCAATAACCCTACATCTAACAGAGGGTT-  188

seq1  ATATCCAAACCTGCAGCCATATGGAGCTTGAGTCCCATGTGTGCCACAGG  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATATCCAAACCTGCAGCCATATGAAGCTTGAGTCCCATGTGTGCCACAGG  238

seq1  AGATTGTGACTTAGTTACTGACACTAAGTGAATTTACATTGGGCATAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTGACTTAGTTACTGACACTAAGTGAATTTACATTGGGCATAAGT  288

seq1  ATTACAAAGAAAATTACCATAAATCATCATGCCACATATGAAAACTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAAGAAAATTACCATAAATCATCATGCCACATATGAAAACTTGTT  338

seq1  GTATGTGACTTCCAATTTGAAAAGGAAGAAAAGAAAAGAAAAGAAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGACTTCCAATTTGAAAAGGAAGAAAAGAAAAGAAAAGAAAAGAA  388

seq1  AAGAAAAGAAAAGAAAAGAAGAGAAAAGAAAAGAAAAGAAAAGTGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAAGAAAAGAAGAGAAAAGAAAAGAAAAGAAAAGTGAAAGA  438

seq1  AAAAGAAAAGAAGCTGTGACTTCAAAGTTTAATGTGAAGAGCTTGGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAAGCTGTGACTTCAAAGTTTAATGTGAAGAGCTTGGAGTT  488

seq1  TCAAAGTCTAGAGCCAGAATATCAAAGAGTGCCCTTTGACTCTTTAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCTAGAGCCAGAATATCAAAGAGTGCCCTTTGACTCTTTAATAT  538

seq1  TTAGTTTTTGTTACTTGTATGGATGACCTATTTTTTTTTTCGTATGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTTGTTACTTGTATGGATGACCTATTTTTTTTTTCGTATGACTC  588

seq1  AGTGAATCACTTGAAACTTAGAAATTCCTATTTTACAACCAACCTAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATCACTTGAAACTTAGAAATTCCTATTTTACAACCAACCTAAATC  638

seq1  CTGAAGAGAAAGTCAGATAGAATTTGAGGTCCATGAAAGGGTCTTCTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGAAAGTCAGATAGAATTTGAGGTCCATGAAAGGGTCTTCTAAC  688

seq1  TACATACACATTTTGCTGTGCCCTGTCTGTCTGATGTACCCACTATCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACACATTTTGCTGTGCCCTGTCTGTCTGATGTACCCACTATCTAA  738

seq1  GTATTTGAAAAGTGTGCTGTTTTATGACTTTCTTTGTCCTGCTGCTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGAAAAGTGTGCTGTTTTATGACTTTCTTTGTCCTGCTGCTAAAA  788

seq1  GTAGTTAGTGAAGTTGATCCATTCTTATCTCATTGTACAAAGTTCAAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTAGTGAAGTTGATCCATTCTTATCTCATTGTACAAAGTTCAAGTC  838

seq1  CAAGTGAATCAAAGGCCTCTAGCCTCTACATAAATCTGGATACACAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAATCAAAGGCCTCTAGCCTCTACATAAATCTGGATACACAGAAA  888

seq1  CTAATAGAAGAGAAAGTGTGGGAAAAGAGACAACCACATGGGAACAGGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGAAGAGAAAGTGTGGGAAAAGAGACAACCACATGGGAACAGGGG  938

seq1  AAAATTTCTTGAACGGAATGCTAATAGCTTATGCTCTAAGATCAAAAGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTTGAACGGAATGCTAATAGCTTATGCTCTAAGATCAAAAGTA  988

seq1  GGCAAATGAGATATCATAAAATTGCAAAGCAAAGGCAAAGAACACTGTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGAGATATCATAAAATTGCAAAGCAAAGGCAAAGAACACTGTCA  1038

seq1  ATGGGACAAAACAGCAACCAAAACATTGGGAAAAGATCTTTACCAATCCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACAAAACAGCAACCAAAACATTGGGAAAAGATCTTTACCAATCCT  1088

seq1  ACATCTGATAG  1111
      |||||||||||
seq2  ACATCTGATAG  1099

seq1: chr12_90150858_90151279
seq2: B6Ng01-118L11.g_424_836 (reverse)

seq1  TATGGCAGTCTCTACATGGTCCATCCTTTCATCTCAGCTCCAAACTTTGT  50
      ||||| |||||||| ||||||||||||||| |||||||||||||||||||
seq2  TATGGTAGTCTCTAGATGGTCCATCCTTTCGTCTCAGCTCCAAACTTTGT  50

seq1  CTCTGTAACTCCTTCCAAGGGTGTTTTGTTCCCACTTCTAAGGAGGGGCA  100
      ||||||||| |||| ||||||||||||||||||| ||||||| |||||||
seq2  CTCTGTAACCCCTTTCAAGGGTGTTTTGTTCCCAATTCTAAGAAGGGGCA  100

seq1  TAGTGTCCACACTTCAGTCTTCATTTTTCTTGAGTTTCATGTGTTTAGGA  150
       |||||||||||||  ||||||||| ||||||||||||||| |||| | |
seq2  AAGTGTCCACACTTTGGTCTTCATTCTTCTTGAGTTTCATGCGTTTTGCA  150

seq1  AATTGTATCTTATATCTTGGGTATCCTAGGTTT-TGGGCTAATATCCACT  199
      ||||||||||| |||||||||||| ||| |||| ||||||||||||||||
seq2  AATTGTATCTTGTATCTTGGGTATTCTACGTTTCTGGGCTAATATCCACT  200

seq1  TATCAGTGAGTACATATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCAC  249
      |||||||||| ||||||||||||| ||| ||||||| |||||||||||||
seq2  TATCAGTGAGAACATATTGTGTGAATTCTTTTGTGATTGTGTTACCTCAC  250

seq1  TCAGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAAT  299
      ||||||||||| |||||||||||||||||||| ||||||||||||| |||
seq2  TCAGGATGATGTCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATTAAT  300

seq1  TCATTCTTTTTAATAGCTAAGTAGTACTCCATTGTGTAGATGTACCACAT  349
      |  |||||||||||||          |||||||||||| ||||| |||||
seq2  TATTTCTTTTTAATAG----------CTCCATTGTGTAAATGTATCACAT  340

seq1  TTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTC  390

seq1  TGGCTATTATAAATAAGGCTGCT  422
      |||||||||||||||||||||||
seq2  TGGCTATTATAAATAAGGCTGCT  413