BAC Information

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BAC

Clone NameB6Ng01-119G16
Chromosome12 (Build37)
Map Location 63,169,381 - 63,215,755
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403
Downstream geneLOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119G16.bB6Ng01-119G16.g
ACCDH923634DH923635
length9951,035
definitionDH923634|Mus musculus domesticus DNA, BAC clone: B6Ng01-119G16, 5' end.DH923635|Mus musculus domesticus DNA, BAC clone: B6Ng01-119G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,169,381 - 63,170,090)(63,214,718 - 63,215,755)
sequence
gaattcattaatcaagtatataggatgacccattctgtggatggtaaacc
tctgtcctcagacatctttaccactgatctgaatttgcacagatatttgt
gttttctttctgtggcatccattccttaaattcttttatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tattctggattatatatatatatatatatattacatattttcctcaatta
catttccaatgctatcccaaaagtcccccataacctcccccccacttccc
tacccatgattcccatttttttggccctggcattcccctgtactggggca
tgtagagtttgcgtgtccaatgggcctctctttcaagtgatggccgacta
ggccatcttttgatacaaatgcagatagagtcaagagctccggggtactg
gttagttcataatgttgttccacatatagggttgcagttccctttagctc
cttggatactttctctagctcctccattgggggccctgtaatgttatatg
taacatcaattaagataatatcaatggttacttatttatgttgagatatt
aaagaatacccctggaggggcattgccaccttttctaaatttgtgtatag
gtcttgaattctatgacgttgattggactgtctctttttgttccaataac
agtctgcttttgttgtacaggtctgtagtataactttaaattggagctat
ggataactccagcagttcttttattatgcttttattatccataatacttt
tttgagggtattgttgttgatgatattcttggtatgatggtggtctggct
ttgttttagctatccttggttttccatatggagctgatttttttatgatt
tttattgaaatacttaatttacccttcaaatggtatcctccttctcttct
ttcctccccttatgaacccccaatccaatgccccctatcccctgg
gaattcctaaggagacttttgagaaaactactcctgtctcttaaaggcag
tgaacacatctttagcacgcaatttcttggtcccaagagtcatccagatt
cactgaagccagaacacagtgcttcaatagctcagcgatttgctgctatt
ttaaaacagatctgaacatctgaagtaaaggaccctacttagcattgtct
tactcactagaaaatatgcctcatttacatcctagtggaaataggcagtt
gatttaattcatttgcagcagtgaaaaatagtgcaatttgtaatcagggc
ctggttggaagtagagttctttgcatatattttaaaattaaattaatcat
aatttatactgcagaaaaagaccgtgattattctataatataacaagcac
tggataagtgcagttacttcatcatgagtttatatctcctttattgtcag
gcataatctaaatgatgacattggtttgggtaacaaggtccatccaaaag
acatcatagtatcattgataatataggcttgttactttagcactctgcag
atggagtagtgtatttgtgttgtccaaaaaggttcattaaaaactgagaa
gccatttaatggtagaaagatttagactaggcaaagcctccagtcaaaat
tgtcaaggaaagatgtttaaccaagtgaaacagaaaaattaaaactgtaa
tcagaattattaaggcataaatgtattttaaaatatttatcgtaatgaag
caggggtctaactgctgcctgtgtgatgaactatatataacaagaacatt
acaattaaaaagcttttcatgtttttttaagtcaactttataacactaca
catagctatttaattttattttaaagccagctagcaatatattttgagct
ctaaccagaagagatgtgaggagggggtgagcatgagacacactgagacc
tagccattgcacagccctacactgctctgctacatggttctttgtagtta
ttttcttaagacatttctgtaggctgtggagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63169381_63170090
seq2: B6Ng01-119G16.b_319_1033

seq1  ATAACCTCCCCCCCACTTCCCTACCCATGATTCCCATTTTTTTGGCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTCCCCCCCACTTCCCTACCCATGATTCCCATTTTTTTGGCCCTG  50

seq1  GCATTCCCCTGTACTGGGGCATGTAGAGTTTGCGTGTCCAATGGGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCCCTGTACTGGGGCATGTAGAGTTTGCGTGTCCAATGGGCCTCT  100

seq1  CTTTCAAGTGATGGCCGACTAGGCCATCTTTTGATACAAATGCAGATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGTGATGGCCGACTAGGCCATCTTTTGATACAAATGCAGATAGA  150

seq1  GTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACATATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACATATAG  200

seq1  GGTTGCAGTTCCCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTCCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAGTTCCCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTCCATTG  250

seq1  GGGGCCCTGTAATGTTATATGTAACATCAATTAAGATAATATCAATGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCCTGTAATGTTATATGTAACATCAATTAAGATAATATCAATGGTT  300

seq1  ACTTATTTATGTTGAGATATTAAAGAATACCCCTGGAGGGGCATTGCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTATGTTGAGATATTAAAGAATACCCCTGGAGGGGCATTGCCAC  350

seq1  CTTTTCTAAATTTGTGTATAGGTCTTGAATTCTATGACGTTGATTGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAAATTTGTGTATAGGTCTTGAATTCTATGACGTTGATTGGACT  400

seq1  GTCTCTTTTTGTTCCAATAACAGTCTGCTTTTGTTGTACAGGTCTGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTTTGTTCCAATAACAGTCTGCTTTTGTTGTACAGGTCTGTAGT  450

seq1  ATAACTTTAAATTGGAGCTATGGATAACTCCAGCAGTTCTTTTATTATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTAAATTGGAGCTATGGATAACTCCAGCAGTTCTTTTATTATGC  500

seq1  TTTTATTATCCATAATACTTTTTTGAGGTTATTGTTGTTGATGATATTCT  550
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTATTATCCATAATACTTTTTTGAGGGTATTGTTGTTGATGATATTCT  550

seq1  TGTTATGATGGTGGTCTGGCTTTGTTTTAGCTATCCTTGGTTTTCCATAT  600
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGATGGTGGTCTGGCTTTGTTTTAGCTATCCTTGGTTTTCCATAT  600

seq1  GAAGCTGATTTTTTTTATGATTTTTATTG-AATACTTTATTTACACTTCA  649
      | |||||| |||||||||||||||||||| ||||||| |||||| |||||
seq2  GGAGCTGA-TTTTTTTATGATTTTTATTGAAATACTTAATTTACCCTTCA  649

seq1  AATGTTATCCTCCTTCTC-TCTTT-CTCCCC-TATGAACCCCC-ATCCCA  695
      |||| ||||||||||||| ||||| |||||| ||||||||||| |||| |
seq2  AATGGTATCCTCCTTCTCTTCTTTCCTCCCCTTATGAACCCCCAATCCAA  699

seq1  TGCCCCCT-TCCCCTG  710
      |||||||| |||||||
seq2  TGCCCCCTATCCCCTG  715

seq1: chr12_63214718_63215755
seq2: B6Ng01-119G16.g_65_1099 (reverse)

seq1  TTTTCTCCACAGGCTTACAGAAATGTCTTAAAGAAAATAACTACAAAGGA  50
      ||||||||||| || |||||||||||||| ||||||||||||||||| ||
seq2  TTTTCTCCACA-GCCTACAGAAATGTCTT-AAGAAAATAACTACAAA-GA  47

seq1  ACCATGTAGCAGAGCAGTGTAGGGCTGTGCAATGGCTAGGTCTCAGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTAGCAGAGCAGTGTAGGGCTGTGCAATGGCTAGGTCTCAGTGTG  97

seq1  TCTCATGCTCACCCCCTCCTCACATCTCTTCTGGTTAGAGCTCAAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGCTCACCCCCTCCTCACATCTCTTCTGGTTAGAGCTCAAAATAT  147

seq1  ATTGCTAGCTGGCTTTAAAATAAAATTAAATAGCTATGTGTAGTGTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAGCTGGCTTTAAAATAAAATTAAATAGCTATGTGTAGTGTTATA  197

seq1  AAGTTGACTTAAAAAAACATGAAAAGCTTTTTAATTGTAATGTTCTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACTTAAAAAAACATGAAAAGCTTTTTAATTGTAATGTTCTTGTT  247

seq1  ATATATAGTTCATCACACAGGCAGCAGTTAGACCCCTGCTTCATTACGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGTTCATCACACAGGCAGCAGTTAGACCCCTGCTTCATTACGAT  297

seq1  AAATATTTTAAAATACATTTATGCCTTAATAATTCTGATTACAGTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTAAAATACATTTATGCCTTAATAATTCTGATTACAGTTTTAA  347

seq1  TTTTTCTGTTTCACTTGGTTAAACATCTTTCCTTGACAATTTTGACTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTTTCACTTGGTTAAACATCTTTCCTTGACAATTTTGACTGGA  397

seq1  GGCTTTGCCTAGTCTAAATCTTTCTACCATTAAATGGCTTCTCAGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGCCTAGTCTAAATCTTTCTACCATTAAATGGCTTCTCAGTTTTT  447

seq1  AATGAACCTTTTTGGACAACACAAATACACTACTCCATCTGCAGAGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCTTTTTGGACAACACAAATACACTACTCCATCTGCAGAGTGCT  497

seq1  AAAGTAACAAGCCTATATTATCAATGATACTATGATGTCTTTTGGATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAACAAGCCTATATTATCAATGATACTATGATGTCTTTTGGATGGA  547

seq1  CCTTGTTACCCAAACCAATGTCATCATTTAGATTATGCCTGACAATAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTACCCAAACCAATGTCATCATTTAGATTATGCCTGACAATAAAG  597

seq1  GAGATATAAACTCATGATGAAGTAACTGCACTTATCCAGTGCTTGTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATAAACTCATGATGAAGTAACTGCACTTATCCAGTGCTTGTTATA  647

seq1  TTATAGAATAATCACGGTCTTTTTCTGCAGTATAAATTATGATTAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAATAATCACGGTCTTTTTCTGCAGTATAAATTATGATTAATTTA  697

seq1  ATTTTAAAATATATGCAAAGAACTCTACTTCCAACCAGGCCCTGATTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAATATATGCAAAGAACTCTACTTCCAACCAGGCCCTGATTACA  747

seq1  AATTGCACTATTTTTCACTGCTGCAAATGAATTAAATCAACTGCCTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCACTATTTTTCACTGCTGCAAATGAATTAAATCAACTGCCTATTT  797

seq1  CCACTAGGATGTAAATGAGGCATATTTTCTAGTGAGTAAGACAATGCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGGATGTAAATGAGGCATATTTTCTAGTGAGTAAGACAATGCTAA  847

seq1  GTAGGGTCCTTTACTTCAGATGTTCAGATCTGTTTTAAAATAGCAGCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTCCTTTACTTCAGATGTTCAGATCTGTTTTAAAATAGCAGCAAA  897

seq1  TCGCTGAGCTATTGAAGCACTGTGTTCTGGCTTCAGTGAATCTGGATGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGAGCTATTGAAGCACTGTGTTCTGGCTTCAGTGAATCTGGATGAC  947

seq1  TCTTGGGACCAAGAAATTGCGTGCTAAAGATGTGTTCACTGCCTTTAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGACCAAGAAATTGCGTGCTAAAGATGTGTTCACTGCCTTTAAGA  997

seq1  GACAGGAGTAGTTTTCTCAAAAGTCTCCTTAGGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAGTAGTTTTCTCAAAAGTCTCCTTAGGAATTC  1035