BAC Information

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BAC

Clone NameB6Ng01-119L09
Chromosome12 (Build37)
Map Location 99,827,713 - 99,983,278
singlet/doubletdoublet
Overlap geneSpata7, Ptpn21
Upstream geneLOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10
Downstream geneZc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892, 2610021K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119L09.bB6Ng01-119L09.g
ACCDH923853DH923854
length2141,028
definitionDH923853|Mus musculus domesticus DNA, BAC clone: B6Ng01-119L09, 5' end.DH923854|Mus musculus domesticus DNA, BAC clone: B6Ng01-119L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,983,065 - 99,983,278)(99,827,713 - 99,828,744)
sequence
gaattcagcattttcagtgctaattcatcgttatcgtctgcaattcaaat
ttatttctacgctagattgctttcgttctccccgttcctgaccacgagaa
acatggaagaatccttttccagaatagatatccagaaaggtttttccatt
ctccccacattcctccaagtcgctgggtggtttggagtatgttttggtgt
tggtgttggtgttg
gaattccaagggtgtgggagaatgggcattttcgtgcgccactggaggga
acacaaattgatacaaggaaggtaaattagggatatcagaggcctaaaat
taaatgatgaggctgtacatatgacatcatgcgaatataatctcaattca
ttgttagtggaaagttgcttattaagttatacaaatgcatatttatgaaa
tgcaaacatatatctgaaacatataccaaaatttcagaggctggagtagg
gttatttacattttgtatatacaggtttctaatgtgtatacccaatatga
ataagcatttatgcctaaaaattaactatttagggatgggtagatggctc
agaacgtagaggcacttgcttccaagcctgattatctgcattcaatttca
aagaattgaatggaaggagagaactgactcctataacttgttctttgacc
ttcataagctgtattatggccacacacagagagagagagagagagagaga
gagacatgtaaataattcattagatgtagttttaaaaactaatttgccca
gggctaggggtgtgactgaatgatagcgttcttgcccaccatgagctagg
ccctgggttcagtccccagcactgcaaataaattaagggataatttactc
aatcaacagaattctagagataattaccacctgtcttcattccttcagga
tttatatggcaaatatccctttgttgttttaaaagtactgctgcaaggct
gatagagctggagagctgtggacaagaaaggaaatggactcaaatgagtg
tggacaaagaggtggagacgagctacaaacatacagctttggtgaggagg
gagtgggccaccatttcagacagatcgattaaaggacagtggtagactgg
tgaacatcttattcagtcactttcaattgtctgtcttctgtgtgacaaca
aggacagagagaggtaaagtcgggatctaagaaagccagcaagccatcat
agaaagatggtccagaagaacagagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_99983065_99983278
seq2: B6Ng01-119L09.b_45_258 (reverse)

seq1  CAACACCAACACCAACACCAAAACATACTCCAAACCACCCAGCGACTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCAACACCAACACCAAAACATACTCCAAACCACCCAGCGACTTGG  50

seq1  AGGAATGTGGGGAGAATGGAAAAACCTTTCTGGATATCTATTCTGGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTGGGGAGAATGGAAAAACCTTTCTGGATATCTATTCTGGAAAA  100

seq1  GGATTCTTCCATGTTTCTCGTGGTCAGGAACGGGGAGAACGAAAGCAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTCCATGTTTCTCGTGGTCAGGAACGGGGAGAACGAAAGCAATC  150

seq1  TAGCGTAGAAATAAATTTGAATTGCAGACGATAACGATGAATTAGCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTAGAAATAAATTTGAATTGCAGACGATAACGATGAATTAGCACTG  200

seq1  AAAATGCTGAATTC  214
      ||||||||||||||
seq2  AAAATGCTGAATTC  214

seq1: chr12_99827713_99828744
seq2: B6Ng01-119L09.g_68_1095

seq1  GAATTCCAAGGGTGTGGGAGAATGGGCATTTTCGTGCGCCACTGGAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGGTGTGGGAGAATGGGCATTTTCGTGCGCCACTGGAGGGA  50

seq1  ACACAAATTGATACAAGGAAGGTAAATTAGGGATATCAGAGGCCTAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATTGATACAAGGAAGGTAAATTAGGGATATCAGAGGCCTAAAAT  100

seq1  TAAATGATGAGGCTGTACATATGACATCATGCGAATATAATCTCAATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATGAGGCTGTACATATGACATCATGCGAATATAATCTCAATTCA  150

seq1  TTGTTAGTGGAAAGTTGCTTATTAAGTTATACAAATGCATATTTATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGTGGAAAGTTGCTTATTAAGTTATACAAATGCATATTTATGAAA  200

seq1  TGCAAACATATATCTGAAACATATACCAAAATTTCAGAGGCTGGAGTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACATATATCTGAAACATATACCAAAATTTCAGAGGCTGGAGTAGG  250

seq1  GTTATTTACATTTTGTATATACAGGTTTCTAATGTGTATACCCAATATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTACATTTTGTATATACAGGTTTCTAATGTGTATACCCAATATGA  300

seq1  ATAAGCATTTATGCCTAAAAATTAACTATTTAGGGATGGGTAGATGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATTTATGCCTAAAAATTAACTATTTAGGGATGGGTAGATGGCTC  350

seq1  AGAACGTAGAGGCACTTGCTTCCAAGCCTGATTATCTGCATTCAATTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGTAGAGGCACTTGCTTCCAAGCCTGATTATCTGCATTCAATTTCA  400

seq1  AAGAATTGAATGGAAGGAGAGAACTGACTCCTATAACTTGTTCTTTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGAATGGAAGGAGAGAACTGACTCCTATAACTTGTTCTTTGACC  450

seq1  TTCATAAGCTGTATTATGGCCACACACAGAGAGAGAGAGAGAGAGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGCTGTATTATGGCCACACACAGAGAGAGAGAGAGAGAGAGAGA  500

seq1  GAGACATGTAAATAATTCATTAGATGTAGTTTTAAAAACTAATTTGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATGTAAATAATTCATTAGATGTAGTTTTAAAAACTAATTTGCCCA  550

seq1  GGGCTAGGGGTGTGACTGAATGATAGCGTTCTTGCCCACCATGAGCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGGGGTGTGACTGAATGATAGCGTTCTTGCCCACCATGAGCTAGG  600

seq1  CCCTGGGTTCAGTCCCCAGCACTGCAAATAAATTAAGGGATAATTTACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGTTCAGTCCCCAGCACTGCAAATAAATTAAGGGATAATTTACTC  650

seq1  AATCAACAGAATTCTAGAGATAATTACCACCTGTCTTCATTCCTTCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACAGAATTCTAGAGATAATTACCACCTGTCTTCATTCCTTCAGGA  700

seq1  TTTATATGGCAAATATCCCTTTGTTGTTTTAAAAGTACTGCTGCAAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGGCAAATATCCCTTTGTTGTTTTAAAAGTACTGCTGCAAGGCT  750

seq1  GATAGAGCTGGAGAGCTGTGGACAAGAAAGGAAATGGACTCAAATGAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGCTGGAGAGCTGTGGACAAGAAAGGAAATGGACTCAAATGAGTG  800

seq1  TGGACAAAGAGGTGGAGAACGAGCTACAAACATACAGCTCTGGTGAGGAG  850
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  TGGACAAAGAGGTGGAG-ACGAGCTACAAACATACAGCTTTGGTGAGGAG  849

seq1  GGAGTGGGCCACCATTTCAGGACAGATCGATTAAAGGACAGTGGTTAGAC  900
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  GGAGTGGGCCACCATTTCA-GACAGATCGATTAAAGGACAGTGG-TAGAC  897

seq1  TGGTGAACATCTTATTCAGTCACTTTCAATTGTTCTGTCTTCTGTGTGGA  950
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  TGGTGAACATCTTATTCAGTCACTTTCAATTG-TCTGTCTTCTGTGT-GA  945

seq1  CAAC-AGGACAGAGAGAGGTAAAGTCGGGATCTAAGAAAGCCAGCAAGCC  999
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGACAGAGAGAGGTAAAGTCGGGATCTAAGAAAGCCAGCAAGCC  995

seq1  ATCATAGAAAGATGGTCCAGAAGAACAGAGCAT  1032
      |||||||||||||||||||||||||||||||||
seq2  ATCATAGAAAGATGGTCCAGAAGAACAGAGCAT  1028