BAC Information

Click to search

BAC

Clone NameB6Ng01-120B18
Chromosome12 (Build37)
Map Location 32,631,616 - 32,631,843
singlet/doubletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120B18.bB6Ng01-120B18.g
ACCDH924139DH924140
length1,222549
definitionDH924139|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B18, 5' end.DH924140|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttactgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagtacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccaagatattttatattat
tgtgactattgagaaggtgttgtttccctatttctttctcagctgtttat
tctttgtatagaagaaaggcattgacttgttgagttatttttatattcag
ctacttcacgaagctgttatcagtttagagttctctggtagaattttagg
ttcacttaaataactatcatatcatctgccaaaaggtaatttgacttcct
cttccaatgatgcctggatcctgtgtggcgtaattggctctgggctatac
atcgagtgacatgatgtaacag
cacaccctcttctggcctttgtgggctctgtactcaagtcacatacccac
acagagacacatacttatacacatagttaaaaataaaatatttaaggagt
tacagagacaaagtttggagctgagacgaaaggatggaccatctagagac
tgccgcacctggggatccatcccataatcagcctccaaacgcagacacca
tcgcatacgccagcaagattttgctgaaaggatcctgatatagctgtctc
ttgtgaggctatgccggtgcctggcaaacacagaagtggatgctcacagt
cagctattgaatggaacacagggcccccaatggggaaaatctagagaaag
tacccaaggagctaaaggggtctgcaaccctataggtggaacaacaatat
gaactaaccagtacccccagagcttgtgtctctagctgcatatgtagcag
aagatggcctagttggccatcattgggaagagaggccccttggtcttgca
aactttatatgcctcagtacaggggaacaccagggccaagaagtgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631843
seq2: B6Ng01-120B18.g_346_621 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      |||||||| | ||||||||||| ||| |||                ||||
seq2  GCAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCAACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCCGGGGGTACTGGTCAGTTCA  103
      || |||||| |||||||||||||| ||||| |||||||||||| ||||||
seq2  TGCTACATATGCAGCTAGAGACACAAGCTCTGGGGGTACTGGTTAGTTCA  150

seq1  TAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  153
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  200

seq1  TTTCTCT--AACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTG  201
      |||||||  |  | | ||||||||| ||||||| ||| || |||||||||
seq2  TTTCTCTAGATTTTCCCCATTGGGGGCCCTGTGTTCC-ATTCAATAGCTG  249

seq1  ACTGTGAGCATCCACTTCTGTGTTTGC  228
      |||||||||||||||||||||||||||
seq2  ACTGTGAGCATCCACTTCTGTGTTTGC  276