BAC Information

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BAC

Clone NameB6Ng01-120E16
Chromosome12 (Build37)
Map Location 88,505,971 - 88,641,946
singlet/doubletdoublet
Overlap geneTmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3
Upstream gene1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237
Downstream geneSptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120E16.bB6Ng01-120E16.g
ACCDH924273DH924274
length1,1371,009
definitionDH924273|Mus musculus domesticus DNA, BAC clone: B6Ng01-120E16, 5' end.DH924274|Mus musculus domesticus DNA, BAC clone: B6Ng01-120E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,505,971 - 88,507,119)(88,640,929 - 88,641,946)
sequence
gaattctttcatttcttattgaacctgactccagaaaacatttacattga
gtcattagttgaaggcaggcctcagaagatgaacatttacactggctgga
aatcatgtctagacatagcagaataactcgttagcctttttctcccacaa
gggttaggaagagaaataagcacagagcctatctgagagaacaagatcca
ggatgaaaagatttaagaagcaggaaagcatctagtggccagctgggctc
ccagagctaggagttgcactgctgttctatgtccacaccagtacagagac
atctgctggtgttctcgacccagttactcatcctaaggagaagccatact
cctgaactagttccaggactaagcacattgaggaagtccactcatgaatg
atgctgggaatggaactagcccccttcctgtgcagtgtagacagcttgac
catctccagcttggactaactaggtgacagcactccccatacagagtact
ctgtacagagtatgtatagcactctgatcaacagcagtacagttctgttt
gcaataaacccatcattgctataaatctaattttcccttagctcccatct
tgtaatgttctgccacagatttatttttatgttttaaaatgtttatgagt
gttttgcctgcatatgtgtatgcccactatgtgcctgcctggtgcctgaa
gaggtcagaggaagacaggtgatcctaacttagaacaggaataacatagc
ttgggagccactgtgtggtactggatgccagacccaggtgctctgcaaga
acaccagtgcttgcaaccactgggacatctctccaaccccaaagatttta
caatttaattctgtgtgggtgttttgattgtatatatgtctgtgtaccgc
gagtgtgcatgccaccggaggccagaagagagtatatcatgttctctggg
actggagtagagatggtgtgagcactgtgtgggtgctgggagctgacttg
gatcgtttacgagagcagcagtgctctttgatggctgagctatcgtttta
taccctttgataggattttacatccagcgactttcattcttaggctcagt
ttttcttaatttatatctcgattatgaagattccaag
gaattcagcttaatttagaagccgctccctggctaaaattctgttctcgg
tgtttatcacgtaccaggcagccatcttcttaatttggatcatgcgaaac
tgccaatattcaacccctttgacaggaccccacaagcaggctgtcaccca
atgcaatgcgtcaccattcaattctgctgctgtggagagcaggggtaatt
tcaaaacaagaccaagtaaaagcaaaacaaaacaaaacccagcgcagctc
tgagatttccactctacttcaggcacccctgagcagtcgtagaccacagc
ttggtcataatagccaccctctccactgcccccaggttcgcttccaggct
ccctcctcccgccatcccaggtaggtatcaccttgatttcattctctcct
attctcatcctaccacctggtctaagccactgctccggaattctagttgc
ccaaaggtcgccgttcagtgagtggcttactgtgaagatccaacccgaag
gtctggccgaaagggctgggctgtcctaaggatcagcgacaccagctgca
ggacggatcctccgacccctgcactcaggcttaccccaccacagcacacc
cgctgttctgggactgtggcttgtgtggtctcctgggtctgacagtccta
aaagctgaaaggggatcgggagctgggaccgcaatgtggcggcgggctcc
tcatcccaggcgacgctgttgaacttccaaagtccctcgcaaacctacct
ggctgcacgcacacttttgcctaagttccaagtctcccaccgctcgccgc
cggtcagtcgcgcgtccctgcctgtgagcccgggctagtttgggaggctg
tcgcccgcgctgtcgaggagcgctcctgtgcgccgcagccttctcgcccc
tcagcagccccctcggtgggaccgcactttcccgggacaggattcgcttg
gggccgcgacgcacagtgccgggactgaggcggggtgccgcagatcaaag
gagccgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_88505971_88507119
seq2: B6Ng01-120E16.b_46_1182

seq1  GAATTCTTTCATTTCTTATTGAACCTGACTCCAGAAAACATTTACATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATTTCTTATTGAACCTGACTCCAGAAAACATTTACATTGA  50

seq1  GTCATTAGTTGAAGGCAGGCCTCAGAAGATGAACATTTACACTGGCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAGTTGAAGGCAGGCCTCAGAAGATGAACATTTACACTGGCTGGA  100

seq1  AATCATGTCTAGACATAGCAGAATAACTCGTTAGCCTTTTTCTCCCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGTCTAGACATAGCAGAATAACTCGTTAGCCTTTTTCTCCCACAA  150

seq1  GGGTTAGGAAGAGAAATAAGCACAGAGCCTATCTGAGAGAACAAGATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGGAAGAGAAATAAGCACAGAGCCTATCTGAGAGAACAAGATCCA  200

seq1  GGATGAAAAGATTTAAGAAGCAGGAAAGCATCTAGTGGCCAGCTGGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAAAGATTTAAGAAGCAGGAAAGCATCTAGTGGCCAGCTGGGCTC  250

seq1  CCAGAGCTAGGAGTTGCACTGCTGTTCTATGTCCACACCAGTACAGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTAGGAGTTGCACTGCTGTTCTATGTCCACACCAGTACAGAGAC  300

seq1  ATCTGCTGGTGTTCTCGACCCAGTTACTCATCCTAAGGAGAAGCCATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGGTGTTCTCGACCCAGTTACTCATCCTAAGGAGAAGCCATACT  350

seq1  CCTGAACTAGTTCCAGGACTAAGCACATTGAGGAAGTCCACTCATGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTAGTTCCAGGACTAAGCACATTGAGGAAGTCCACTCATGAATG  400

seq1  ATGCTGGGAATGGAACTAGCCCCCTTCCTGTGCAGTGTAGACAGCTTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGAATGGAACTAGCCCCCTTCCTGTGCAGTGTAGACAGCTTGAC  450

seq1  CATCTCCAGCTTGGACTAACTAGGTGACAGCACTCCCCATACAGAGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCAGCTTGGACTAACTAGGTGACAGCACTCCCCATACAGAGTACT  500

seq1  CTGTACAGAGTATGTATAGCACTCTGATCAACAGCAGTACAGTTCTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAGAGTATGTATAGCACTCTGATCAACAGCAGTACAGTTCTGTTT  550

seq1  GCAATAAACCCATCATTGCTATAAATCTAATTTTCCCTTAGCTCCCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAACCCATCATTGCTATAAATCTAATTTTCCCTTAGCTCCCATCT  600

seq1  TGTAATGTTCTGCCACAGATTTATTTTTATGTTTTAAAATGTTTATGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGTTCTGCCACAGATTTATTTTTATGTTTTAAAATGTTTATGAGT  650

seq1  GTTTTGCCTGCATATGTGTATGCCCACTATGTGCCTGCCTGGTGCCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCTGCATATGTGTATGCCCACTATGTGCCTGCCTGGTGCCTGAA  700

seq1  GAGGTCAGAGGAAGACAGGTGATCCTAACTTAGAACAGGAATAACATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGAGGAAGACAGGTGATCCTAACTTAGAACAGGAATAACATAGC  750

seq1  TTGGGAGCCACTGTGTGGTACTGGATGCCAGACCCAGGTGCTCTGCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGCCACTGTGTGGTACTGGATGCCAGACCCAGGTGCTCTGCAAGA  800

seq1  ACACCAGTGCTTGCAACCACTGGGACATCTCTCCAACCCCAAAGATTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGTGCTTGCAACCACTGGGACATCTCTCCAACCCCAAAGATTTTA  850

seq1  CAATTTAATTCTGTGTGGGTGTTTTGATTGTATATATGTCTGTGTACCGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAATTCTGTGTGGGTGTTTTGATTGTATATATGTCTGTGTACCGC  900

seq1  GAGTGTGCAATGCCACCGGAGGCCAGAAGAGAGTATATCATGTTCTCTGG  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGC-ATGCCACCGGAGGCCAGAAGAGAGTATATCATGTTCTCTGG  949

seq1  AACTGGAGTTAGAGATGGTTGTGAGCCACTGTGTGGGTGCTGGGAGCTGA  1000
       ||||||| ||||||||| |||||| ||||||||||||||||||||||| 
seq2  GACTGGAG-TAGAGATGG-TGTGAG-CACTGTGTGGGTGCTGGGAGCTG-  995

seq1  ACCTGGATCGTTTACGAGAGCAGCAAGTGCTC-TTGATGGCTGAGCTATC  1049
      || ||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  ACTTGGATCGTTTACGAGAGCAGC-AGTGCTCTTTGATGGCTGAGCTATC  1044

seq1  GTTCTATACCCTTTGATAGGATTTTACATACAAGCAGACATTCA-TCTTA  1098
      ||| ||||||||||||||||||||||||| | ||| ||| |||| |||||
seq2  GTTTTATACCCTTTGATAGGATTTTACAT-CCAGC-GACTTTCATTCTTA  1092

seq1  GGCTCAGTTTTTCTTAATTTTTATAATCTTAGATTATGAAAGATTCACAA  1148
      |||||||||||||||||||| |||     | ||||||| ||||||| |||
seq2  GGCTCAGTTTTTCTTAATTTATAT----CTCGATTATG-AAGATTC-CAA  1136

seq1  G  1149
      |
seq2  G  1137

seq1: chr12_88640929_88641946
seq2: B6Ng01-120E16.g_69_1077 (reverse)

seq1  GGGCGGCTCCTTTGATCTGGCGGCCACCCCGCCCTCAGTCCCCGCCACTG  50
      |||||||||||||||||| |||| ||||||| ||||||| |||| |||||
seq2  GGGCGGCTCCTTTGATCT-GCGG-CACCCCG-CCTCAGT-CCCGGCACTG  46

seq1  TCGCCGTCGCGGCCCCAAGCGAATTCCTGTCCCGGGAAAGTTGCGGTCCC  100
      |   ||||||||||||||||||| |||||||||||||||| |||||||||
seq2  T--GCGTCGCGGCCCCAAGCGAA-TCCTGTCCCGGGAAAG-TGCGGTCCC  92

seq1  A-CGA-GGGGCTGCTGAGGGGCGAGAAGGCTGCGGCGCCACAGGAGCGCT  148
      | ||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACCGAGGGGGCTGCTGAGGGGCGAGAAGGCTGCGGCG-CACAGGAGCGCT  141

seq1  CCTCGACAGCGCGGGCGACAGCCTCCCAAACTAGCCCGGGCCTCACAGGC  198
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTCGACAGCGCGGGCGACAGCCTCCCAAACTAGCCCGGG-CTCACAGGC  190

seq1  AGGGACGCGCGACTGACCGGCGGCGAGCGGTGGGAGACTTTGGAACTTAG  248
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGGACGCGCGACTGACCGGCGGCGAGCGGTGGGAGAC-TTGGAACTTAG  239

seq1  GCAAAAGTGTGCGTGCAGCCAGGTAGGTTTGCGAGGGACTTTGGAAGTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGTGTGCGTGCAGCCAGGTAGGTTTGCGAGGGACTTTGGAAGTTC  289

seq1  AACAGCGTCGCCTGGGATGAGGAGCCCGCCGCCACATTGCGGTCCCAGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCGTCGCCTGGGATGAGGAGCCCGCCGCCACATTGCGGTCCCAGCT  339

seq1  CCCGATCCCCTTTCAGCTTTTAGGACTGTCAGACCCAGGAGACCACACAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATCCCCTTTCAGCTTTTAGGACTGTCAGACCCAGGAGACCACACAA  389

seq1  GCCACAGTCCCAGAACAGCGGGTGTGCTGTGGTGGGGTAAGCCTGAGTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGTCCCAGAACAGCGGGTGTGCTGTGGTGGGGTAAGCCTGAGTGC  439

seq1  AGGGGTCGGAGGATCCGTCCTGCAGCTGGTGTCGCTGATCCTTAGGACAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCGGAGGATCCGTCCTGCAGCTGGTGTCGCTGATCCTTAGGACAG  489

seq1  CCCAGCCCTTTCGGCCAGACCTTCGGGTTGGATCTTCACAGTAAGCCACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCTTTCGGCCAGACCTTCGGGTTGGATCTTCACAGTAAGCCACT  539

seq1  CACTGAACGGCGACCTTTGGGCAACTAGAATTCCGGAGCAGTGGCTTAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACGGCGACCTTTGGGCAACTAGAATTCCGGAGCAGTGGCTTAGA  589

seq1  CCAGGTGGTAGGATGAGAATAGGAGAGAATGAAATCAAGGTGATACCTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGGTAGGATGAGAATAGGAGAGAATGAAATCAAGGTGATACCTAC  639

seq1  CTGGGATGGCGGGAGGAGGGAGCCTGGAAGCGAACCTGGGGGCAGTGGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGGCGGGAGGAGGGAGCCTGGAAGCGAACCTGGGGGCAGTGGAG  689

seq1  AGGGTGGCTATTATGACCAAGCTGTGGTCTACGACTGCTCAGGGGTGCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGCTATTATGACCAAGCTGTGGTCTACGACTGCTCAGGGGTGCCT  739

seq1  GAAGTAGAGTGGAAATCTCAGAGCTGCGCTGGGTTTTGTTTTGTTTTGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAGTGGAAATCTCAGAGCTGCGCTGGGTTTTGTTTTGTTTTGCT  789

seq1  TTTACTTGGTCTTGTTTTGAAATTACCCCTGCTCTCCACAGCAGCAGAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGGTCTTGTTTTGAAATTACCCCTGCTCTCCACAGCAGCAGAAT  839

seq1  TGAATGGTGACGCATTGCATTGGGTGACAGCCTGCTTGTGGGGTCCTGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGTGACGCATTGCATTGGGTGACAGCCTGCTTGTGGGGTCCTGTC  889

seq1  AAAGGGGTTGAATATTGGCAGTTTCGCATGATCCAAATTAAGAAGATGGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGTTGAATATTGGCAGTTTCGCATGATCCAAATTAAGAAGATGGC  939

seq1  TGCCTGGTACGTGATAAACACCGAGAACAGAATTTTAGCCAGGGAGCGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTACGTGATAAACACCGAGAACAGAATTTTAGCCAGGGAGCGGC  989

seq1  TTCTAAATTAAGCTGAATTC  1018
      ||||||||||||||||||||
seq2  TTCTAAATTAAGCTGAATTC  1009