BAC Information

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BAC

Clone NameB6Ng01-120F18
Chromosome12 (Build37)
Map Location 83,996,533 - 84,176,575
singlet/doubletdoublet
Overlap geneRgs6
Upstream genePcnx, Sipa1l1, LOC432675, EG666911
Downstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120F18.bB6Ng01-120F18.g
ACCDH924323DH924324
length168970
definitionDH924323|Mus musculus domesticus DNA, BAC clone: B6Ng01-120F18, 5' end.DH924324|Mus musculus domesticus DNA, BAC clone: B6Ng01-120F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,176,408 - 84,176,575)(83,996,533 - 83,997,510)
sequence
gaattccaaaagagggtgcatttacatcgctcttatacattgctatgatc
gtcctattttattatgagttattattgatatccagggtttgtaggcatag
gagaaaatagtgtaagtagcatttggcagtatttggccatccctggcggc
gggggtggggtggggggg
gaattctaaggagttttaattagcatgcatctagggctcattaattggaa
ttctacaaacagaaaatttataatttgttcagaaaccacaataaaggaga
actgtgtgctataaagaacagccttttaaagtaaattaatgagataaata
aaactgctcaggacatatttaagccttaatgaggactaagttttggtgct
gaagatcatttggttgagatgatgtgatcttggctgcagcctcagtaaac
aaaatcagcccttcaggctcctgtctcctggtccagaactgtcttcaccc
cattgatcattactgatgcttctctgtgagtcataagtgcaccttacagc
actctgtgtatatgaaggagttagtaaagctcagatgttctgcaaacaca
cttaatgacagtgttcacacaacagctctgcttcttggttttgcaaactt
acctgtgcttctttggctgttcttgttctggctgtgcccactgctgtact
ctgagccaaatccgaggcttctcaaagtgagcccagttcttagaagggag
ggttctattatcatttttttataagttgctaacagttgacccttaggcct
cccatatgctaagtaagcactccaccactgagctacatccctagcgtgca
ctgtgctgactctaggattgggatctatcctatcattcactgtatcttgg
ggactcacactgggcaaatgtccctccagacatctggaaggaagctggga
tgtacataaagggcatgaaacagtcatcgatcattgacagtgtgagtgta
cagtaagtgtgaaaaaataaaccaaagggaggtctcctcatgactggtgg
gctggatgccaggatggatcaaattgtatcatttgctaggagaatctctg
gctggaatctgaactgcatcctaaaaaaactcacaatctgcttgctgctg
taagtcccagacatctggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_84176408_84176575
seq2: B6Ng01-120F18.b_46_213 (reverse)

seq1  CCCCCCCACCCCACCCCCGCCGCCAGGGATGGCCAAATACTGCCAAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCACCCCACCCCCGCCGCCAGGGATGGCCAAATACTGCCAAATGC  50

seq1  TACTTACACTATTTTCTCCTATGCCTACAAACCCTGGATATCAATAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACACTATTTTCTCCTATGCCTACAAACCCTGGATATCAATAATAA  100

seq1  CTCATAATAAAATAGGACGATCATAGCAATGTATAAGAGCGATGTAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAATAAAATAGGACGATCATAGCAATGTATAAGAGCGATGTAAATG  150

seq1  CACCCTCTTTTGGAATTC  168
      ||||||||||||||||||
seq2  CACCCTCTTTTGGAATTC  168

seq1: chr12_83996533_83997510
seq2: B6Ng01-120F18.g_66_1035

seq1  GAATTCTAAGGAGTTTTAATTAGCATGCAGCTAGGGCTCATTAATTGGAA  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTCTAAGGAGTTTTAATTAGCATGCATCTAGGGCTCATTAATTGGAA  50

seq1  TTCTACAAACAGAAAATTTATAATTTGTTCAGAAACCACAATAAAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAAACAGAAAATTTATAATTTGTTCAGAAACCACAATAAAGGAGA  100

seq1  ACTGTGTGCTATAAAGAACAGCCTTTTAAAGTAAATTAATGAGATAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGCTATAAAGAACAGCCTTTTAAAGTAAATTAATGAGATAAATA  150

seq1  AAACTGCTCAGGACATATTTAAGCCTTAATGAGGACTAAGTTTTGGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTCAGGACATATTTAAGCCTTAATGAGGACTAAGTTTTGGTGCT  200

seq1  GAAGATCATTTGGTTGAGATGATGTGATCTTGGCTGCAGCCTCAGTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCATTTGGTTGAGATGATGTGATCTTGGCTGCAGCCTCAGTAAAC  250

seq1  AAAATCAGCCCTTCAGGCTCCTGTCTCCTGGTCCAGAACTGTCTTCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGCCCTTCAGGCTCCTGTCTCCTGGTCCAGAACTGTCTTCACCC  300

seq1  CATTGATCATTACTGATGCTTCTCTGTGAGTCATAAGTGCACCTTACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATCATTACTGATGCTTCTCTGTGAGTCATAAGTGCACCTTACAGC  350

seq1  ACTCTGTGTATATGAAGGAGTTAGTAAAGCTCAGATGTTCTGCAAACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGTATATGAAGGAGTTAGTAAAGCTCAGATGTTCTGCAAACACA  400

seq1  CTTAATGACAGTGTTCACACAACAGCTCTGCTTCTTGGTTTTGCAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGACAGTGTTCACACAACAGCTCTGCTTCTTGGTTTTGCAAACTT  450

seq1  ACCTGTGCTTCTTTGGCTGTTCTTGTTCTGGCTGTGCCCACTGCTGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGCTTCTTTGGCTGTTCTTGTTCTGGCTGTGCCCACTGCTGTACT  500

seq1  CTGAGCCAGATCCGAGGCTTCTCAAAGTGAGCCCAGTTCTTAGAAGGGAG  550
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCAAATCCGAGGCTTCTCAAAGTGAGCCCAGTTCTTAGAAGGGAG  550

seq1  GGTTCTATTATCA-TTTTTTATAAGTTGCTAACAGTTGACCCTAAGGCCT  599
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  GGTTCTATTATCATTTTTTTATAAGTTGCTAACAGTTGACCCTTAGGCCT  600

seq1  CCCATATGCTAAGTAAGCACTCCACCACTGAGCTACATCCCTAGCGTGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATGCTAAGTAAGCACTCCACCACTGAGCTACATCCCTAGCGTGCA  650

seq1  CTGTGCTGACTCTAGGATTGGGATCTATCCTATCATTCACTGTATCTTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGACTCTAGGATTGGGATCTATCCTATCATTCACTGTATCTTGG  700

seq1  GGACTCAGACTGGGCAAATGTCACTCCAGACATCTGGAAGGAAGGCTGGG  749
      ||||||| |||||||||||||| |||||||||||||||||||| ||||||
seq2  GGACTCACACTGGGCAAATGTCCCTCCAGACATCTGGAAGGAA-GCTGGG  749

seq1  GATTGTACATAAAGGGCATGAAACAGTCATCGCATCAGTGACAGTTGTGA  799
         ||||||||||||||||||||||||||||| |||| |||||| |||||
seq2  --ATGTACATAAAGGGCATGAAACAGTCATCG-ATCATTGACAG-TGTGA  795

seq1  GTGTTCAAGTAGGTGTTAAGAAATAAAACCAAGGGAGGTCTCTACAGGGC  849
      |||| | |||| |||| || ||||||| | ||||||||||||  || | |
seq2  GTGTAC-AGTAAGTGTGAAAAAATAAACCAAAGGGAGGTCTCCTCATGAC  844

seq1  TGGTGGGCTGGATGCCAGGATGGTTCAGAATGTATCATTTGCTAGGAGAA  899
      ||||||||||||||||||||||| ||| | ||||||||||||||||||||
seq2  TGGTGGGCTGGATGCCAGGATGGATCAAATTGTATCATTTGCTAGGAGAA  894

seq1  TCTCTTGGCCTGGAATCTGACCTGCACCCT-ATAAAACTCACCATCTGGC  948
      |||||  | ||||||||||| ||||| ||| | ||||||||| |||| ||
seq2  TCTCT--GGCTGGAATCTGAACTGCATCCTAAAAAAACTCACAATCT-GC  941

seq1  TTGCTGCTGTTAAGTCCCAGACATCTGGAA  978
      ||||||||| ||||||||||||||||||||
seq2  TTGCTGCTG-TAAGTCCCAGACATCTGGAA  970