BAC Information

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BAC

Clone NameB6Ng01-122I03
Chromosome12 (Build37)
Map Location 85,469,397 - 85,607,097
singlet/doubletdoublet
Overlap geneDnalc1, Pnma1, C130039O16Rik, EG432676
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6
Downstream geneZadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122I03.bB6Ng01-122I03.g
ACCDH925913DH925914
length1,1001,032
definitionDH925913|Mus musculus domesticus DNA, BAC clone: B6Ng01-122I03, 5' end.DH925914|Mus musculus domesticus DNA, BAC clone: B6Ng01-122I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,605,972 - 85,607,097)(85,469,397 - 85,470,436)
sequence
gaattcaatcccctctggcctccgtaggcacctgaacacatgtggtgaat
atgcatgctcacatagacacctgcctctgcctcccgagtgctgggatcaa
aggcgtgcgccaccacgcctggcagcaaatcactttttgactaactgtat
ggtacataatttataataatcaactaataaaaactgactataacaacgta
taataaaataaacacaattatgaagagcagaattacaattttatgctttt
gccaataacttcactttctatttcggtgtttattttgacaagagatagtg
ttacagctgaggattggaagtgaagagatgggctggcagttaagggcact
ggctgctctaccaatggcctaggtttgattcccaggccgctcacaccagt
ctgtaactccaattctagggcctccaaagccctctgctgtcctctgtaag
cacaaggcacacacatggggacagctctacaagctgaccaaacatccaag
cacataaaataatggaaattaaaaaaaatttttttaaataggtaaaaatt
atatgcaatttagcacttaaatgtcttctcagaatggcacccataactgc
tcacaggataaaaacaactgaatcagaaaatgctcaggaaggggttcaga
gtgtgccacccacaaacatactactgtggaatactgattttttttttgag
ctcaagaaaattgagaaccaaccagctgatttaggaaaagctcattatct
cccactcagctgcctagattttttctcatgtggaggaaacagacatcctt
gaagcaatcgttgttagccaagatctccatacaacggagaagagtacttg
gagccatgtctacaggcacgaatggtaagctttgctcttcattctttctc
tcccaatccttacctttccaaactttcttttcaccacctcccaggagccc
aaaccccgttctttctgcagctgagataatgtataactcacatgccctct
tgactaatttttgaggactctgtgctattgcatacagacttgtttttctt
ctgtatctgtctttttaaaagatcatcattattaatatacagtattctgc

gaattccaggacagttagagctacacagaaaaaccctatcttgggaaacc
aaaaccaaaccaaaacaaacaaaacaaaacaaaacaaaaaagactttctt
ttctgaccaagtagaccaggctagccagccagttcagggatctggccgtc
ttcgcctcactaggtctgggattgcaagtgcacaacaccagctttttcat
gggtttgggaatgagactcaggccttcatgctagctctgcactgtccact
cagcctacaacacactcagctgatgtcacggcctatcaaaggaccatgac
ttgtgttgtttgagaagcctggcctggtgacagtggtgacggcataattg
atcctgtctctttctgtccttcagttagctgtcccacagatgccagagtt
ctcattctgaaggcaccattctccacagcagagacctttcatcagtcctc
ttgcctaatagacacttagtgtctaacgttcctatctgaatcagctaaaa
gctcacactgccttgtcctcaaacggggctggaccatttctttgatggct
tggttgttggttttctttgattcatttgtttttgtttggaacatggtctc
actgtgtagccctggctgtcctggaactcactatgtagacctagttagcc
tcaaactcatagagacccacctgcctctcctttctgggtgctgggattga
aagtgtgtgctgccatgcctggccgtacattctttatgacttttgtatgt
tgcttatccagtgctccgcactgagtacagccttgctgtctcacaggaaa
atccgtgagaatttaaggtcagggtcagtgtcccatcaaatgccacagcc
tctctaggacctcccagagctccacgttacattctttactttagagtaat
tataattaccttgggttttacatttgcctactaatgcagtaatgtaagat
ttgtaataatgaagtttaatatggtgctataaaatgagtctaaagctggg
aagggtagtgtgcaatcccaaactgagctact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_85605972_85607097
seq2: B6Ng01-122I03.b_47_1146 (reverse)

seq1  GCAGAATACTGTATATATAATAAATGAATGAATCTTTTTAAAAAAGACAG  50
      |||||||||||||||| |||| |||| ||| |||||||  ||||||||||
seq2  GCAGAATACTGTATAT-TAAT-AATG-ATG-ATCTTTT--AAAAAGACAG  44

seq1  ATTAACAGAAGAAAAACAAGTCTTGTTATGCAAATAAGCACAGGAGTCCC  100
      ||  |||||||||||||||||||   |||||||   |||||| |||| ||
seq2  AT--ACAGAAGAAAAACAAGTCT--GTATGCAA--TAGCACA-GAGT-CC  86

seq1  TCAAAAAATTAGTCAAAGAGGGGGCCATGTGAGGTTTATACAATTATCCT  150
      || ||||||||||| |||||||   ||||||||  |||||| ||||| ||
seq2  TC-AAAAATTAGTC-AAGAGGG---CATGTGAG--TTATAC-ATTAT-CT  127

seq1  CAGCTGCAGAAAGGAACGGGGTTTGGGGCTCCTGGGAGGTGGTGAAAAGA  200
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  CAGCTGCAGAAA-GAACGGGGTTT-GGGCTCCTGGGAGGTGGTGAAAAGA  175

seq1  AAGTTTGGAAAGGTAAGGATTGGGAGAGAAAGAATGAAGAGCAAAGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGGAAAGGTAAGGATTGGGAGAGAAAGAATGAAGAGCAAAGCTTA  225

seq1  CCATTCGTGCCTGTAGACATGGCTCCAAGTACTCTTCTCCGTTGTATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCGTGCCTGTAGACATGGCTCCAAGTACTCTTCTCCGTTGTATGGA  275

seq1  GATCTTGGCTAACAACGATTTGCTTCAAGGATGTCTGTTTCCTCCACATG  350
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GATCTTGGCTAACAACGA-TTGCTTCAAGGATGTCTGTTTCCTCCACATG  324

seq1  AGAAAAAATCTAGGCAGCTGAGTGGGAGATAATGAGCTTTTCCTAAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATCTAGGCAGCTGAGTGGGAGATAATGAGCTTTTCCTAAATCA  374

seq1  GCTGGTTGGTTCTCAATTTTCTTGAGCTCAAAAAAAAAATCAGTATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTGGTTCTCAATTTTCTTGAGCTCAAAAAAAAAATCAGTATTCCA  424

seq1  CAGTAGTATGTTTGTGGGTGGCACACTCTGAACCCCTTCCTGAGCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTATGTTTGTGGGTGGCACACTCTGAACCCCTTCCTGAGCATTTT  474

seq1  CTGATTCAGTTGTTTTTATCCTGTGAGCAGTTATGGGTGCCATTCTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCAGTTGTTTTTATCCTGTGAGCAGTTATGGGTGCCATTCTGAGA  524

seq1  AGACATTTAAGTGCTAAATTGCATATAATTTTTACCTATTTAAAAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTAAGTGCTAAATTGCATATAATTTTTACCTATTTAAAAAAATT  574

seq1  TTTTTTAATTTCCATTATTTTATGTGCTTGGATGTTTGGTCAGCTTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATTTCCATTATTTTATGTGCTTGGATGTTTGGTCAGCTTGTAG  624

seq1  AGCTGTCCCCATGTGTGTGCCTTGTGCTTACAGAGGACAGCAGAGGGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCCCCATGTGTGTGCCTTGTGCTTACAGAGGACAGCAGAGGGCTT  674

seq1  TGGAGGCCCTAGAATTGGAGTTACAGACTGGTGTGAGCGGCCTGGGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCCTAGAATTGGAGTTACAGACTGGTGTGAGCGGCCTGGGAATC  724

seq1  AAACCTAGGCCATTGGTAGAGCAGCCAGTGCCCTTAACTGCCAGCCCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAGGCCATTGGTAGAGCAGCCAGTGCCCTTAACTGCCAGCCCATC  774

seq1  TCTTCACTTCCAATCCTCAGCTGTAACACTATCTCTTGTCAAAATAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTTCCAATCCTCAGCTGTAACACTATCTCTTGTCAAAATAAACA  824

seq1  CCGAAATAGAAAGTGAAGTTATTGGCAAAAGCATAAAATTGTAATTCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAATAGAAAGTGAAGTTATTGGCAAAAGCATAAAATTGTAATTCTGC  874

seq1  TCTTCATAATTGTGTTTATTTTATTATACGTTGTTATAGTCAGTTTTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATAATTGTGTTTATTTTATTATACGTTGTTATAGTCAGTTTTTAT  924

seq1  TAGTTGATTATTATAAATTATGTACCATACAGTTAGTCAAAAAGTGATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGATTATTATAAATTATGTACCATACAGTTAGTCAAAAAGTGATTT  974

seq1  GCTGCCAGGCGTGGTGGCGCACGCCTTTGATCCCAGCACTCGGGAGGCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGGCGTGGTGGCGCACGCCTTTGATCCCAGCACTCGGGAGGCAG  1024

seq1  AGGCAGGTGTCTATGTGAGCATGCATATTCACCACATGTGTTCAGGTGCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGTCTATGTGAGCATGCATATTCACCACATGTGTTCAGGTGCC  1074

seq1  TACGGAGGCCAGAGGGGATTGAATTC  1126
      ||||||||||||||||||||||||||
seq2  TACGGAGGCCAGAGGGGATTGAATTC  1100

seq1: chr12_85469397_85470436
seq2: B6Ng01-122I03.g_69_1100

seq1  GAATTCCAGGACAGTTAGAGCTACACAGAAAAACCCTATCTTGGGAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGTTAGAGCTACACAGAAAAACCCTATCTTGGGAAACC  50

seq1  AAAACCAAACCAAAACAAACAAAACAAAACAAAACAAAAAAGACTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAACCAAAACAAACAAAACAAAACAAAACAAAAAAGACTTTCTT  100

seq1  TTCTGACCAAGTAGACCAGGCTAGCCAGCCAGTTCAGGGATCTGGCCGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACCAAGTAGACCAGGCTAGCCAGCCAGTTCAGGGATCTGGCCGTC  150

seq1  TTCGCCTCACTAGGTCTGGGATTGCAAGTGCACAACACCAGCTTTTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCTCACTAGGTCTGGGATTGCAAGTGCACAACACCAGCTTTTTCAT  200

seq1  GGGTTTGGGAATGAGACTCAGGCCTTCATGCTAGCTCTGCACTGTCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGGGAATGAGACTCAGGCCTTCATGCTAGCTCTGCACTGTCCACT  250

seq1  CAGCCTACAACACACTCAGCTGATGTCACGGCCTATCAAAGGACCATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTACAACACACTCAGCTGATGTCACGGCCTATCAAAGGACCATGAC  300

seq1  TTGTGTTGTTTGAGAAGCCTGGCCTGGTGACAGTGGTGACGGCATAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGTTTGAGAAGCCTGGCCTGGTGACAGTGGTGACGGCATAATTG  350

seq1  ATCCTGTCTCTTTCTGTCCTTCAGTTAGCTGTCCCACAGATGCCAGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCTCTTTCTGTCCTTCAGTTAGCTGTCCCACAGATGCCAGAGTT  400

seq1  CTCATTCTGAAGGCACCATTCTCCACAGCAGAGACCTTTCATCAGTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTGAAGGCACCATTCTCCACAGCAGAGACCTTTCATCAGTCCTC  450

seq1  TTGCCTAATAGACACTTAGTGTCTAACGTTCCTATCTGAATCAGCTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAATAGACACTTAGTGTCTAACGTTCCTATCTGAATCAGCTAAAA  500

seq1  GCTCACACTGCCTTGTCCTCAAACGGGGCTGGACCATTTCTTTGATGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACACTGCCTTGTCCTCAAACGGGGCTGGACCATTTCTTTGATGGCT  550

seq1  TGGTTGTTGGTTTTCTTTGATTCATTTGTTTTTGTTTGGAACATGGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTTGGTTTTCTTTGATTCATTTGTTTTTGTTTGGAACATGGTCTC  600

seq1  ACTGTGTAGCCCTGGCTGTCCTGGAACTCACTATGTAGACCTAGTTAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTAGCCCTGGCTGTCCTGGAACTCACTATGTAGACCTAGTTAGCC  650

seq1  TCAAACTCATAGAGACCCACCTGCCTCTCCTTTCTGGGTGCTGGGATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTCATAGAGACCCACCTGCCTCTCCTTTCTGGGTGCTGGGATTGA  700

seq1  AAGTGTGTGCTGCCATGCCTGGCCGTACATTCTTTATGACTTTTGTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGTGTGTGCTGCCATGCCTGGCCGTACATTCTTTATGACTTTTGTATG-  749

seq1  TTGCTTATCCAGTGCTCCGCACTGAGTACAGCCTTGCTGTCTCACAGGAA  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGCTTATCCAGTGCTCCGCACTGAGTACAGCCTTGCTGTCTCACAGG-A  798

seq1  AAATCCGTGAGAAATTAAGGTCAGGGTCAGTGTCCCATCAAATGCCACAG  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAATCCGTGAGAATTTAAGGTCAGGGTCAGTGTCCCATCAAATGCCACAG  848

seq1  CCTCTCTAGGACCTCCCAGAGCTCCACGTTACAATCTTTACTTTAGAGTA  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTCTCTAGGACCTCCCAGAGCTCCACGTTACATTCTTTACTTTAGAGTA  898

seq1  TTTATAATTTACCTTGGGTTTTAACATTTGCCTACTAATGCAGTTAATGT  950
       |||||| |||||||||||||| |||||||||||||||||||| ||||||
seq2  ATTATAA-TTACCTTGGGTTTT-ACATTTGCCTACTAATGCAG-TAATGT  945

seq1  AAAGATATGTAAATTATGGAGTTTTATATGGTGCATATAAAATGAAGTCT  1000
       ||||| ||| ||| ||| ||||| ||||||||| ||||||||| |||||
seq2  -AAGATTTGT-AATAATGAAGTTTAATATGGTGC-TATAAAATG-AGTCT  991

seq1  AAAGCTGGGTATGGTAGTGTGC-ATACCCAACTGAGCTACT  1040
      ||||||||| | |||||||||| || || ||||||||||||
seq2  AAAGCTGGGAAGGGTAGTGTGCAATCCCAAACTGAGCTACT  1032