BAC Information

Click to search

BAC

Clone NameB6Ng01-123I17
Chromosome12 (Build37)4 (Build37)
Map Location 94,389,512 - 94,390,6818,331,111 - 8,331,666
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039425, LOC628116
Downstream gene2610022K04Rik-ps, EG633639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123I17.bB6Ng01-123I17.g
ACCDH926682DH926683
length1,160825
definitionDH926682|Mus musculus domesticus DNA, BAC clone: B6Ng01-123I17, 5' end.DH926683|Mus musculus domesticus DNA, BAC clone: B6Ng01-123I17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,389,512 - 94,390,681)(8,331,111 - 8,331,666)
sequence
gaattcatgacagtaaaagagcacccatgcctctttcttttatgagcaca
atctcgcagatgtcttcacactaaagacagttcccaggaatctgcagctg
gagggaaaaatgctaaattacctcaaactgacatcttgatcatgtttttg
agatctctataatgtcgcaatgttactacagtgggaaactctctgcagga
agaagccagtgccttttgtgcagtcactgacagggaaccgcttgtagcta
attacttctttacagataaactgctagaaaggtgatttttactgggattg
cctcagtgtttctaacagtcacagaactctgggctctcaggaagtcaact
gagagattatcagctcggggacagagcctcggttgcaggtacatcacatt
tttttgcaacgaacatgaacagctttaagcctttcttctccttattcttc
tgcaggctaacacagtccccagtgtggcttttagctgttccatcctggtt
tatttccccaccatgcttctaaggggatgctgaaagcaacagctacgcag
ctgtacctgatccctggcacggagtccacagcccctcagcttccttcgct
gcttctgctctctttctctgcaggggattgactgaaataggaaagccttc
atttttattagtgactctcttttttgcttttaaaaaatacagttcttttt
acgatgcacagtacttattcactttaatttgcctcctataaaatgataaa
atgcattaagctgccctgtcctctttgttgtttgagccatagcattgctt
aggtttcatgtggcagttttgtggcatttatgatggaacaggaaaatatt
aattataatgaggagagagataagttatgatagttacagcatcttggcat
ttattttcctggagcttatgtctgaaagtgttccaaaacataaaatcttg
cagttcaaggaatggaaatctctcttgtttcactgagttggtgtaagatt
attaaatgtaaaattcagatgaaatgtgggcacttctcttttgtctctat
tagaaaactgaaatcaataatctccttaatacatatggttgccagtgtct
ctacatgggccaatactttaagatatttgaaagaatttttaagtattcag
gataaatagt
gaattcaagtacaatgttgaataggtaggtagaaagtggacagccttgtc
tagtccctgattttagtggaattgcttccagcttctcaccatttactttt
gtgttggctactggtttgctgtagattgcttttatcaggtttaggtatgg
gccttgaattcctgatctttccaagacttttatcatgaatgggggttggt
ttttgtcaaaagctttttaagcatctaagaagatgatcatttggtttttg
tctttgactttgttcatatagtggattaggctcatggatttctgtatatt
aaaccatccctgcatccctggaatgaaacctacttggtcaggatggatga
ttgttttgatgtgttcttggattcagttagtgagaattttattgagtatt
tttgcatcaatattcataagggaaattggtctgaagccctctttctttgt
tgggtctttctgtggtttaggtatcagagtaattgtggcatcagagaatg
agttgggtagagtaccttctactttctattttgtggaatagtgtgtgcag
aactggaattagatcttctttgaaggtctgatagaactctgcactaaacc
catctggtccttttagggggatatggggactgttcagatttgttaacttg
atcctgatttaactttggtacctgggtatctgtctagaatttgtccattt
tcatccaggttttcagtttttgttgagtatagcctttttgtagaaggatc
tgattgtgttttggattccttcaggatctgtttgttatgtctcccttttc
atttctgattttgttaattaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_94389512_94390681
seq2: B6Ng01-123I17.b_44_1203 (reverse)

seq1  ACTATTTTATCCTGAATAACTATAAAAATCCCTTCAAATATCTTTAAAGA  50
      |||| |||||||||||| ||| ||||||| | |||||||||| |||||| 
seq2  ACTA-TTTATCCTGAAT-ACT-TAAAAATTCTTTCAAATATC-TTAAAG-  45

seq1  TATTGTCCCATTGTAGAGACACTGGCAACCCATATGTATAAAAGAGATAT  100
      ||||| |||| ||||||||||||||||| |||||||||| || |||||  
seq2  TATTGGCCCA-TGTAGAGACACTGGCAA-CCATATGTATTAAGGAGAT--  91

seq1  AAATAGATTTCAGTTTTTCTATAGAGATCAAAAGAG-AGTG-CCACATTT  148
        || ||||||||||||   ||||||| |||||||| |||| ||||||||
seq2  -TATTGATTTCAGTTTTCTAATAGAGA-CAAAAGAGAAGTGCCCACATTT  139

seq1  CATCTGAAATTTTACATTTAAT-ATCTTACACCAACTCAGTGGAAACAAG  197
      |||||| ||||||||||||||| |||||||||||||||||| ||||||||
seq2  CATCTG-AATTTTACATTTAATAATCTTACACCAACTCAGT-GAAACAAG  187

seq1  AGAGATTTCCATTCCTTGAACTGCAAGATTTTATGTTTTGGAACACTTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTCCATTCCTTGAACTGCAAGATTTTATGTTTTGGAACACTTTC  237

seq1  AGACATAAGCTCCAGGAAAATAAATGCCAAGATGCTGTAACTATCATAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAGCTCCAGGAAAATAAATGCCAAGATGCTGTAACTATCATAAC  287

seq1  TTATCTCTCTCCTCATTATAATTAATATTTTCCTGTTCCATCATAAATGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTCTCCTCATTATAATTAATATTTTCCTGTTCCATCATAAATGC  337

seq1  CACAAAACTGCCACATGAAACCTAAGCAATGCTATGGCTCAAACAACAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACTGCCACATGAAACCTAAGCAATGCTATGGCTCAAACAACAAA  387

seq1  GAGGACAGGGCAGCTTAATGCATTTTATCATTTTATAGGAGGCAAATTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGGGCAGCTTAATGCATTTTATCATTTTATAGGAGGCAAATTAA  437

seq1  AGTGAATAAGTACTGTGCATCGTAAAAAGAACTGTATTTTTTAAAAGCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATAAGTACTGTGCATCGTAAAAAGAACTGTATTTTTTAAAAGCAA  487

seq1  AAAAGAGAGTCACTAATAAAAATGAAGGCTTTCCTATTTCAGTCAATCCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAGTCACTAATAAAAATGAAGGCTTTCCTATTTCAGTCAATCCC  537

seq1  CTGCAGAGAAAGAGAGCAGAAGCAGCGAAGGAAGCTGAGGGGCTGTGGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGAAAGAGAGCAGAAGCAGCGAAGGAAGCTGAGGGGCTGTGGAC  587

seq1  TCCGTGCCAGGGATCAGGTACAGCTGCGTAGCTGTTGCTTTCAGCATCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGCCAGGGATCAGGTACAGCTGCGTAGCTGTTGCTTTCAGCATCCC  637

seq1  CTTAGAAGCATGGTGGGGAAATAAACCAGGATGGAACAGCTAAAAGCCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGCATGGTGGGGAAATAAACCAGGATGGAACAGCTAAAAGCCAC  687

seq1  ACTGGGGACTGTGTTAGCCTGCAGAAGAATAAGGAGAAGAAAGGCTTAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGACTGTGTTAGCCTGCAGAAGAATAAGGAGAAGAAAGGCTTAAA  737

seq1  GCTGTTCATGTTCGTTGCAAAAAAATGTGATGTACCTGCAACCGAGGCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCATGTTCGTTGCAAAAAAATGTGATGTACCTGCAACCGAGGCTC  787

seq1  TGTCCCCGAGCTGATAATCTCTCAGTTGACTTCCTGAGAGCCCAGAGTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCGAGCTGATAATCTCTCAGTTGACTTCCTGAGAGCCCAGAGTTC  837

seq1  TGTGACTGTTAGAAACACTGAGGCAATCCCAGTAAAAATCACCTTTCTAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGTTAGAAACACTGAGGCAATCCCAGTAAAAATCACCTTTCTAG  887

seq1  CAGTTTATCTGTAAAGAAGTAATTAGCTACAAGCGGTTCCCTGTCAGTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATCTGTAAAGAAGTAATTAGCTACAAGCGGTTCCCTGTCAGTGA  937

seq1  CTGCACAAAAGGCACTGGCTTCTTCCTGCAGAGAGTTTCCCACTGTAGTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAAAAGGCACTGGCTTCTTCCTGCAGAGAGTTTCCCACTGTAGTA  987

seq1  ACATTGCGACATTATAGAGATCTCAAAAACATGATCAAGATGTCAGTTTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCGACATTATAGAGATCTCAAAAACATGATCAAGATGTCAGTTTG  1037

seq1  AGGTAATTTAGCATTTTTCCCTCCAGCTGCAGATTCCTGGGAACTGTCTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATTTAGCATTTTTCCCTCCAGCTGCAGATTCCTGGGAACTGTCTT  1087

seq1  TAGTGTGAAGACATCTGCGAGATTGTGCTCATAAAAGAAAGAGGCATGGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGAAGACATCTGCGAGATTGTGCTCATAAAAGAAAGAGGCATGGG  1137

seq1  TGCTCTTTTACTGTCATGAATTC  1170
      |||||||||||||||||||||||
seq2  TGCTCTTTTACTGTCATGAATTC  1160

seq1: chr4_8331111_8331666
seq2: B6Ng01-123I17.g_375_892 (reverse)

seq1  CATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAAC-AACAGAT  49
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAAACAGAT  50

seq1  CCTGAAGAAATCCAAAACACCATCAGATCCTTCTAC-AAAAGGCTATACT  98
      ||||||| |||||||||||| ||||||||||||||| |||||||||||||
seq2  CCTGAAGGAATCCAAAACACAATCAGATCCTTCTACAAAAAGGCTATACT  100

seq1  CAACAAAACTGGAAAACCTGGA-CTAAATGGACAAATTTCTAGACAGATA  147
      ||||||||   |||||||||||   ||||||||||| |||||||||||||
seq2  CAACAAAAACTGAAAACCTGGATGAAAATGGACAAA-TTCTAGACAGATA  149

seq1  -CCAGGTACCAAAGTTAAATCAGGATCAAGTTAA-TGATCTAAACAGT-C  194
       |||||||||||||||||||||||||||||||||   |||| |||||| |
seq2  CCCAGGTACCAAAGTTAAATCAGGATCAAGTTAACAAATCTGAACAGTCC  199

seq1  CCATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAGCCAAA  244
      |||||||||                                    || ||
seq2  CCATATCCC------------------------------------CCTAA  213

seq1  AAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCA  294
      |        |||||||||||||||||||||||||||||||||||||||||
seq2  A--------AGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCA  255

seq1  AAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAG-AAGA  343
      ||||||||||||||||||||||||||| ||||||||||||||||| ||| 
seq2  AAGAAGATCTAATTCCAGTTCTGCACACACTATTCCACAAAATAGAAAGT  305

seq1  AGAAGGTACTCTACCCAACTCATTCTATGAAGCTACAATTACTCTGATAC  393
      |||||||||||||||||||||||||| ||| || ||||||||||||||||
seq2  AGAAGGTACTCTACCCAACTCATTCTCTGATGCCACAATTACTCTGATAC  355

seq1  CTAAACCACAGAAAGATCCAACAAAGATAGAGATCTTCAGACCAATTTCC  443
      |||||||||||||||| |||||||||| ||||  ||||||||||||||||
seq2  CTAAACCACAGAAAGACCCAACAAAGAAAGAGGGCTTCAGACCAATTTCC  405

seq1  CTTATGAATATCGATGCAAAAATACTCAATAAAATTCTCGCTAACCGAAC  493
      ||||||||||| ||||||||||||||||||||||||||| ||||| ||| 
seq2  CTTATGAATATTGATGCAAAAATACTCAATAAAATTCTCACTAACTGAAT  455

seq1  CCAAGAAAACATTAAAGCAATCATCCATCATGACCAAGTAGGTTTTATTC  543
      ||||||| |||| ||| |||||||||||| ||||||||||||||| ||||
seq2  CCAAGAACACATCAAAACAATCATCCATCCTGACCAAGTAGGTTTCATTC  505

seq1  CAGGGATTCAGGG  556
      ||||||| |||||
seq2  CAGGGATGCAGGG  518