BAC Information

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BAC

Clone NameB6Ng01-123P22
Chromosome12 (Build37)
Map Location 63,449,454 - 63,613,332
singlet/doubletdoublet
Overlap geneLOC622746, LOC100040438
Upstream geneLOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403, LOC665713
Downstream gene1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123P22.bB6Ng01-123P22.g
ACCDH927015DH927016
length1,211322
definitionDH927015|Mus musculus domesticus DNA, BAC clone: B6Ng01-123P22, 5' end.DH927016|Mus musculus domesticus DNA, BAC clone: B6Ng01-123P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,449,454 - 63,450,701)(63,613,011 - 63,613,332)
sequence
gaattctattaccaacagaaatatcagccccgggccatgtggcaattaag
tgcttaagcctgaaaaaagaaaagatgcttaattttatatatttcttctg
aaagtatttaaaaactaaaatggaaatatcaaagtgagtgctatttggta
atgtagacattaatattatcacatgttgttcttactggtgtcagttaaag
ccttacccctctgtgggtgactgtaccaaatggtttgactcagccttttt
tttttaactacttgactcatgaaatcattatttcaaattgtctaacattt
agaagagtaggaaaagaaagaaagctaaattgcaaatatttagcatttaa
gttaaggcaattaaaatatctcctttatttcatgtggtacaatcatagca
tttgatactgttacattgataaataaataattgtaaatacaacacatatt
ggtaaaactttgggactaattccttttactgaaagaaatttaatgaaatg
taaatgtaaagtagtttgaaattgcatcttagtccagtcagaattgctaa
gatccaaaaatgaatgatgagaaatactggtatgtaccctgaaagaggta
atacatacttagtgctagtgggagtgccactgcagctactgtggaagtca
gtgaggacatttctataaagctgaatacacattatccagttacaccattc
ttggatctattcccaaagcattatgtatgactacagagatagatgttcat
tgtgttcactgctgccctatttataatatctagagatagaaacatactag
ctgttcatcctcacaggcatagatgatgaaaatgggtatgtgatacatgt
aatatcactttaagaaatatgaaatgacaaatatgcaggtaaagtgaagc
tggaatcacttatcattagtgaggaccagaaagtcaataacatgtgtgtt
ctctatttgtgagtatagctttaaacattcagatgtgtttgcttcatctg
attttttttaataagaaaaaaatgagtttttaactttcacaagaaaaatg
catgacttgtccttaaggttaagaaagattttatttatttaaaagatagt
aactgcctttattgaagaaatctgttcataaaagtgtccatattctttaa
gaatgacttctgaactctcatgcaaaattccaaggtttggtcaaaaatga
ccttttatagg
ttttggtatggaatagcaaaatgcttaataaaacatttgtatcatttaac
agaaaataaaaataaatctcattaacttgatggagtaactaagaggattt
ttaaacaaataactaggtgtaaaattggttttgctttgaatctctcataa
tttatgtgaaatatactgaccacgttagagctgaaattattagccctgag
gacttatagttattataaacacacacacacacacacacacacacacacac
acacaacatattgacttttcccttttccaggggagtgattgtgtgtgtgt
gtgtatgtgttgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63449454_63450701
seq2: B6Ng01-123P22.b_52_1262

seq1  GAATTCTATTACCAACAGAAATATCAGCCCCGGGCCATGTGGCAATTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTACCAACAGAAATATCAGCCCCGGGCCATGTGGCAATTAAG  50

seq1  TGCTTAAGCCTGAAAAAAGAAAAGATGCTTAATTTTATATATTTCTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAGCCTGAAAAAAGAAAAGATGCTTAATTTTATATATTTCTTCTG  100

seq1  AAAGTATTTAAAAACTAAAATGGAAATATCAAAGTGAGTGCTATTTGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTAAAAACTAAAATGGAAATATCAAAGTGAGTGCTATTTGGTA  150

seq1  ATGTAGACATTAATATTATCACATGTTGTTCTTACTGGTGTCAGTTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACATTAATATTATCACATGTTGTTCTTACTGGTGTCAGTTAAAG  200

seq1  CCTTACCCCTCTGTGGGTGACTGTACCAAATGGTTTGACTCAGCCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCCCTCTGTGGGTGACTGTACCAAATGGTTTGACTCAGCCTTTTT  250

seq1  TTTTTAACTACTTGACTCATGAAATCATTATTTCAAATTGTCTAACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACTACTTGACTCATGAAATCATTATTTCAAATTGTCTAACATTT  300

seq1  AGAAGAGTAGGAAAAGAAAGAAAGCTAAATTGCAAATATTTAGCATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTAGGAAAAGAAAGAAAGCTAAATTGCAAATATTTAGCATTTAA  350

seq1  GTTAAGGCAATTAAAATATCTCCTTTATTTCATGTGGTACAATCATAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGCAATTAAAATATCTCCTTTATTTCATGTGGTACAATCATAGCA  400

seq1  TTTGATACTGTTACATTGATAAATAAATAATTGTAAATACAACACATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATACTGTTACATTGATAAATAAATAATTGTAAATACAACACATATT  450

seq1  GGTAAAACTTTGGGACTAATTCCTTTTACTGAAAGAAATTTAATGAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAACTTTGGGACTAATTCCTTTTACTGAAAGAAATTTAATGAAATG  500

seq1  TAAATGTAAAGTAGTTTGAAATTGCATCTTAGTCCAGTCAGAATTGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAAAGTAGTTTGAAATTGCATCTTAGTCCAGTCAGAATTGCTAA  550

seq1  GATCCAAAAATGAATGATGAGAAATACTGGTATGTACCCTGAAAGAGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAAAAATGAATGATGAGAAATACTGGTATGTACCCTGAAAGAGGTA  600

seq1  ATACATACTTAGTGCTAGTGGGAGTGCCACTGCAGCTACTGTGGAAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACTTAGTGCTAGTGGGAGTGCCACTGCAGCTACTGTGGAAGTCA  650

seq1  GTGAGGACATTTCTATAAAGCTGAATACACATTATCCAGTTACACCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGACATTTCTATAAAGCTGAATACACATTATCCAGTTACACCATTC  700

seq1  TTGGATCTATTCCCAAAGCATTATGTATGACTACAGAGATAGATGTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCTATTCCCAAAGCATTATGTATGACTACAGAGATAGATGTTCAT  750

seq1  TGTGTTCACTGCTGCCCTATTTATAATATCTAGAGATAGAAACATACTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCACTGCTGCCCTATTTATAATATCTAGAGATAGAAACATACTAG  800

seq1  CTGTTCATCCTCACAGGCATAGATGATGAAAATGGGTATGTGATACATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATCCTCACAGGCATAGATGATGAAAATGGGTATGTGATACATGT  850

seq1  AATATCACTTTAAGAAATATGAAATGACAAAATATGCAGGTAAAGTGAAG  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATATCACTTTAAGAAATATGAAATGAC-AAATATGCAGGTAAAGTGAAG  899

seq1  CTGGAATCACTTATCATTAGTGAGGACCAGAAAGTCAAATAACATGTGTG  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGGAATCACTTATCATTAGTGAGGACCAGAAAGTC-AATAACATGTGTG  948

seq1  TTCTCTTATTTGTGAGTATAAGCTTTAAACATTCAGATGTGTTTGCTTCA  1000
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCTC-TATTTGTGAGTAT-AGCTTTAAACATTCAGATGTGTTTGCTTCA  996

seq1  TCTGATTTTTTTTAAATAAGAAAAAAATGAAGTTTTTAACTTTCACAAGA  1050
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  TCTGATTTTTTTT-AATAAGAAAAAAATG-AGTTTTTAACTTTCACAAGA  1044

seq1  AAAATGCATGACTTGTCCTTACAAGTTAAG-AAGATTTTTATTATTTAAA  1099
      ||||||||||||||||||||| | |||||| ||||||||  |||||| ||
seq2  AAAATGCATGACTTGTCCTTA-AGGTTAAGAAAGATTTTATTTATTT-AA  1092

seq1  AAGATAAGTTAAATTTGCTTTTATGAAAGATA-CTGTTCATAAAAAGTTG  1148
      ||||| |||   |  ||| |||||  |||| | ||||||||||||   ||
seq2  AAGAT-AGT---AACTGCCTTTATTGAAGAAATCTGTTCATAAAA--GTG  1136

seq1  TTCATATTTCTTTTTAAGATATGACCTTTCATGACACTCTCTCCATTGTC  1198
      | |||||   | ||||||| |||||  ||| ||| ||||         ||
seq2  TCCATAT---TCTTTAAGA-ATGAC--TTC-TGA-ACTC---------TC  1169

seq1  AATAAAATTTCCCAAATGTTTTGTGGTACAAAAATTGACCCTTTTATAGG  1248
      |   ||| ||||  || |||| ||    |||||| ||| |||||||||||
seq2  ATGCAAAATTCC--AAGGTTTGGT----CAAAAA-TGA-CCTTTTATAGG  1211

seq1: chr12_63613011_63613332
seq2: B6Ng01-123P22.g_75_396 (reverse)

seq1  CACACACACACAACACATACACACACACACACAATCACTCCCCTGGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAACACATACACACACACACACAATCACTCCCCTGGAAAA  50

seq1  GGGAAAAGTCAATATGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGTCAATATGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  100

seq1  GTGTTTATAATAACTATAAGTCCTCAGGGCTAATAATTTCAGCTCTAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATAATAACTATAAGTCCTCAGGGCTAATAATTTCAGCTCTAACG  150

seq1  TGGTCAGTATATTTCACATAAATTATGAGAGATTCAAAGCAAAACCAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGTATATTTCACATAAATTATGAGAGATTCAAAGCAAAACCAATT  200

seq1  TTACACCTAGTTATTTGTTTAAAAATCCTCTTAGTTACTCCATCAAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCTAGTTATTTGTTTAAAAATCCTCTTAGTTACTCCATCAAGTTA  250

seq1  ATGAGATTTATTTTTATTTTCTGTTAAATGATACAAATGTTTTATTAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATTTATTTTTATTTTCTGTTAAATGATACAAATGTTTTATTAAGC  300

seq1  ATTTTGCTATTCCATACCAAAA  322
      ||||||||||||||||||||||
seq2  ATTTTGCTATTCCATACCAAAA  322