BAC Information

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BAC

Clone NameB6Ng01-124A01
Chromosome12 (Build37)
Map Location 113,280,903 - 113,468,346
singlet/doubletdoublet
Overlap geneTdrd9, A530050D06Rik, Kif26a
Upstream geneRcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943
Downstream geneA730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124A01.bB6Ng01-124A01.g
ACCDH927021DH927022
length9331,134
definitionDH927021|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A01, 5' end.DH927022|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,280,903 - 113,281,831)(113,467,213 - 113,468,346)
sequence
gaattcaagatttgcaaaatgcgaccatcagcaaagtctctcatctgtgg
cgagcactggagtgggggtgcccatgggcgctttgctgccttggtcggcg
gctgtcctctcctggtgaaggtgttctccattgtacacagtgttctgcat
gtggacgtgtaccgctactcgggtgcccaggatgctgtcaacgtcagaga
tgttctcatcagggagggctatgctgagctcgcagaggagtcctatgagt
caaaagtatgaaccgtgtctgtttgtggagcacgtgtgtgtgctggcgag
gctgggccaggctgggaggggcagcgggtgcaccacttttcttcctttgt
gtgatgtggagacacagggtaggtgatgtgtgtgggtgctcgttggttgg
tattctgagcatctaaaccagtggtgaccccagccataaaattattctca
ttgctacttcataactaattttgccactgtgtggtcataatgtaaggagc
tgatatgcagatggccttaggtgccccctgtgaagggttatttagctcta
aaagggtcatgacccataggttggaaagcgatgatctgagtgctgtgttt
atctctggggattgcattgtggtgggcgcatgctattttggcagcttcct
aattaattgtttttgtttttagaaattaaaattaacttgaaaaattatat
atttgagctttatctttttttaattgattctaaaaattattttctataat
ggaaagtactcaataagcaagtcatatatttaagcattttaaaaattttc
ttttaacttttgcttaaagcttttttattgcaaatattcagaaattaaat
acaatttacaccatttcctctccttgcaattccgcatacttccccccgcc
ccactccttcacgtcctgaatatgaatatgaat
gaattcctgaaggacttggtaactctacagagctccttcagcaaatagca
ggtctcaggacactatcaaggcccagagttctagagagacagtcattccc
tccccccactacttgaggccttcctgtcttctgtgttgtagagcatctca
ccttccatacaggaggccagagctcccaaatgctgggcaagcctgttggt
tctgacctagtgaccttggccacaaagtccctgtccaagctttctgcttt
gtatagtccccaacccccaccatcacttcccccaccccccacagacagac
agacagacagagacacagagagagacagaggcatggacacaggcacacac
agagacatggacatacatacagagacacacacatggacacagacatggga
cacacacacacattcacagagacatggacacagacacaaacgctgagaca
cacagagagacacatgtctggaagctgcagacttggtatggaggaagtaa
gagctggagaccagtcctccgttcacaccccatcttgaatggcttcaagc
actgaagtggttaaagcctcccagcccgtctgatcaattcattatcattt
ctaatacagatcaatactcactagcacccatctgacaaagcctacagcct
tcagacccaaaacatgaaagacttcctaagctgctgccagccccttcccc
acgccgcatcccatcgtgttcctgatcgctgccctggaaggatacaaatc
gatgcctggcattgatcacctttcctcaggcagccacagacacgtgccca
ccccttccccccaactgaatctctgtctcccacgtaaatgggggcctctt
aaaaagccttgattgctcttccaccccaaggtccactgcctaagaggcgc
tatccctgacacgtgctgtgcgcacagctttgtcttcagtataaacagat
ttgtcttccagttcagccctatgcctaatttatcagccaggtgcagctat
tctgctccctggttgctggcctgggttggaggacagaagggtgaaagatg
agaccttgcttgcaggcaccctgctgtctcggcatagccacacaagggaa
agggatggggagagggaaaaaatggaggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_113280903_113281831
seq2: B6Ng01-124A01.b_46_978

seq1  GAATTCAAGATTTGCAAAATGCGACCATCAGCAAAGTCTCTCATCTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATTTGCAAAATGCGACCATCAGCAAAGTCTCTCATCTGTGG  50

seq1  CGAGCACTGGAGTGGGGGTGCCCATGGGCGCTTTGCTGCCTTGGTCGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCACTGGAGTGGGGGTGCCCATGGGCGCTTTGCTGCCTTGGTCGGCG  100

seq1  GCTGTCCTCTCCTGGTGAAGGTGTTCTCCATTGTACACAGTGTTCTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTCTCCTGGTGAAGGTGTTCTCCATTGTACACAGTGTTCTGCAT  150

seq1  GTGGACGTGTACCGCTACTCGGGTGCCCAGGATGCTGTCAACGTCAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACGTGTACCGCTACTCGGGTGCCCAGGATGCTGTCAACGTCAGAGA  200

seq1  TGTTCTCATCAGGGAGGGCTATGCTGAGCTCGCAGAGGAGTCCTATGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCATCAGGGAGGGCTATGCTGAGCTCGCAGAGGAGTCCTATGAGT  250

seq1  CAAAAGTATGAACCGTGTCTGTTTGTGGAGCACGTGTGTGTGCTGGCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTATGAACCGTGTCTGTTTGTGGAGCACGTGTGTGTGCTGGCGAG  300

seq1  GCTGGGCCAGGCTGGGAGGGGCAGCGGGTGCACCACTTTTCTTCCTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCCAGGCTGGGAGGGGCAGCGGGTGCACCACTTTTCTTCCTTTGT  350

seq1  GTGATGTGGAGACACAGGGTAGGTGATGTGTGTGGGTGCTCGTTGGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTGGAGACACAGGGTAGGTGATGTGTGTGGGTGCTCGTTGGTTGG  400

seq1  TATTCTGAGCATCTAAACCAGTGGTGACCCCAGCCATAAAATTATTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGAGCATCTAAACCAGTGGTGACCCCAGCCATAAAATTATTCTCA  450

seq1  TTGCTACTTCATAACTAATTTTGCCACTGTGTGGTCATAATGTAAGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACTTCATAACTAATTTTGCCACTGTGTGGTCATAATGTAAGGAGC  500

seq1  TGATATGCAGATGGCCTTAGGTGCCCCCTGTGAAGGGTTATTTAGCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGCAGATGGCCTTAGGTGCCCCCTGTGAAGGGTTATTTAGCTCTA  550

seq1  AAAGGGTCATGACCCATAGGTTGGAAAGCGATGATCTGAGTGCTGTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTCATGACCCATAGGTTGGAAAGCGATGATCTGAGTGCTGTGTTT  600

seq1  ATCTCTGGGGATTGCATTGTGGTGGGCGCATGCTATTTTGGCAGCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGGGATTGCATTGTGGTGGGCGCATGCTATTTTGGCAGCTTCCT  650

seq1  AATTAATTGTTTTTG-TTTTAGAAATTAAAATTAACTTGAAAATATTATA  699
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  AATTAATTGTTTTTGTTTTTAGAAATTAAAATTAACTTGAAAA-ATTATA  699

seq1  TATTTGAGCTTTATC-TTTTTTAATTGATTCTAAAAATTA-TTTCTATAA  747
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  TATTTGAGCTTTATCTTTTTTTAATTGATTCTAAAAATTATTTTCTATAA  749

seq1  TGG-AAGTACTCAATAAGCAAGTCATATA-TTAAGCATTTCAAAA--TTT  793
      ||| ||||||||||||||||||||||||| |||||||||| ||||  |||
seq2  TGGAAAGTACTCAATAAGCAAGTCATATATTTAAGCATTTTAAAAATTTT  799

seq1  CTTTTAAC-TTTGCTTTAAGCTTTTTTATTTGCAAATATTCAGAAATTAA  842
      |||||||| ||||||| ||||||||||| ||||||||||||||||||| |
seq2  CTTTTAACTTTTGCTTAAAGCTTTTTTA-TTGCAAATATTCAGAAATT-A  847

seq1  AATACAA-TTACACCATTTCC-CTCCTTGCAATTCCTGCATACTTCCCCC  890
      ||||||| ||||||||||||| |||||||||||||| |||||||||||||
seq2  AATACAATTTACACCATTTCCTCTCCTTGCAATTCC-GCATACTTCCCCC  896

seq1  CGCCCCACTCCTCTCACGTTCGTGAATATGAATATGAAT  929
      |||||||||||| ||||| || |||||||||||||||||
seq2  CGCCCCACTCCT-TCACG-TCCTGAATATGAATATGAAT  933

seq1: chr12_113467213_113468346
seq2: B6Ng01-124A01.g_68_1201 (reverse)

seq1  CCCCCACCCCTCCATCTTTT-CCTCTCCCCAT-CCTGTCCTTTGTGTGGT  48
      ||||||  ||||||| |||| ||||||||||| ||| ||| |||||||| 
seq2  CCCCCA--CCTCCATTTTTTCCCTCTCCCCATCCCTTTCCCTTGTGTGGC  48

seq1  TATGCCGAGA-AGCAGGGATGCCTGACAGCCAAGGTCTCA-CTCTCACC-  95
      |||||||||| ||||||| |||||| ||  |||||||||| || ||||| 
seq2  TATGCCGAGACAGCAGGG-TGCCTG-CAAGCAAGGTCTCATCTTTCACCC  96

seq1  -TCTGTCCCCCAAGCCCAGCCAGCAACCAGGAAGCAGATTAGCTGCACCT  144
       ||||||| |||| ||  ||||||||||||| |||||| |||||||||||
seq2  TTCTGTCCTCCAACCCAGGCCAGCAACCAGGGAGCAGAATAGCTGCACCT  146

seq1  GGCCTGATAAATTAGACATAGGGCTGAACTGGAAGACAAATCCTGTTTAT  194
      || |||||||||||| ||||||||||||||||||||||||| ||||||| 
seq2  GG-CTGATAAATTAGGCATAGGGCTGAACTGGAAGACAAAT-CTGTTTA-  193

seq1  TACTGAAGACAAAGCTGGTGCGCACAGCACGTGTCAGGGATAGCGCCTC-  243
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  TACTGAAGACAAAGCT-GTGCGCACAGCACGTGTCAGGGATAGCGCCTCT  242

seq1  TAGGCAGTGGACCTTGGGGTGGAAGAGCAATCAAGGCTTTTTAAGAGGCC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGTGGACCTTGGGGTGGAAGAGCAATCAAGGCTTTTTAAGAGGCC  292

seq1  CCCATTTACGTGGGAGACAGAGATTCAGTTTGGGGGGAGGGGTGGGCACG  343
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  CCCATTTACGTGGGAGACAGAGATTCAGTTGGGGGGAAGGGGTGGGCACG  342

seq1  TGTCTGTGGCTGCCTGAGGAAAGGTGATCAATGCCAGGCATCGATTTGTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGGCTGCCTGAGGAAAGGTGATCAATGCCAGGCATCGATTTGTA  392

seq1  TCCTTCCAGGGCAGCGATCAGGAACACGATGGGATGCGGCGTGGGG-AGG  442
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCCTTCCAGGGCAGCGATCAGGAACACGATGGGATGCGGCGTGGGGAAGG  442

seq1  GGCTGGCAGCAGCTTAGGAAGTCTTTCATGTTTTGGGTCTGAAGGCTGTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCAGCAGCTTAGGAAGTCTTTCATGTTTTGGGTCTGAAGGCTGTA  492

seq1  GGCTTTGTCAGATGGGTGCTAGTGAGTATTGATCTGTATTAGAAATGATA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGTCAGATGGGTGCTAGTGAGTATTGATCTGTATTAGAAATGATA  542

seq1  ATGAATTGATCAGACGGGCTGGGAGGCTTTAACCACTTCAGTGCTTGAAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGATCAGACGGGCTGGGAGGCTTTAACCACTTCAGTGCTTGAAG  592

seq1  CCATTCAAGATGGGGTGTGAACGGAGGACTGGTCTCCAGCTCTTACTTCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAAGATGGGGTGTGAACGGAGGACTGGTCTCCAGCTCTTACTTCC  642

seq1  TCCATACCAAGTCTGCAGCTTCCAGACATGTGTCTCTCTGTGTGTCTCAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACCAAGTCTGCAGCTTCCAGACATGTGTCTCTCTGTGTGTCTCAG  692

seq1  CGTTTGTGTCTGTGTCCATGTCTCTGTGAATGTGTGTGTGTGTCCCATGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGTGTCTGTGTCCATGTCTCTGTGAATGTGTGTGTGTGTCCCATGT  742

seq1  CTGTGTCCATGTGTGTGTCTCTGTATGTATGTCCATGTCTCTGTGTGTGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCATGTGTGTGTCTCTGTATGTATGTCCATGTCTCTGTGTGTGC  792

seq1  CTGTGTCCATGCCTCTGTCTCTCTCTGTGTCTCTGTCTGTCTGTCTGTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCATGCCTCTGTCTCTCTCTGTGTCTCTGTCTGTCTGTCTGTCT  842

seq1  GTGGGGGGTGGGGGAAGTGATGGTGGGGGTTGGGGACTATACAAAGCAGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGGTGGGGGAAGTGATGGTGGGGGTTGGGGACTATACAAAGCAGA  892

seq1  AAGCTTGGACAGGGACTTTGTGGCCAAGGTCACTAGGTCAGAACCAACAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGGACAGGGACTTTGTGGCCAAGGTCACTAGGTCAGAACCAACAG  942

seq1  GCTTGCCCAGCATTTGGGAGCTCTGGCCTCCTGTATGGAAGGTGAGATGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCCAGCATTTGGGAGCTCTGGCCTCCTGTATGGAAGGTGAGATGC  992

seq1  TCTACAACACAGAAGACAGGAAGGCCTCAAGTAGTGGGGGGAGGGAATGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAACACAGAAGACAGGAAGGCCTCAAGTAGTGGGGGGAGGGAATGA  1042

seq1  CTGTCTCTCTAGAACTCTGGGCCTTGATAGTGTCCTGAGACCTGCTATTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCTAGAACTCTGGGCCTTGATAGTGTCCTGAGACCTGCTATTT  1092

seq1  GCTGAAGGAGCTCTGTAGAGTTACCAAGTCCTTCAGGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGGAGCTCTGTAGAGTTACCAAGTCCTTCAGGAATTC  1134