BAC Information

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BAC

Clone NameB6Ng01-125H20
Chromosome12 (Build37)
Map Location 8,312,088 - 8,313,233
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668380, EG668388, Apob, 1110057K04Rik, Gdf7
Downstream geneHs1bp3, BC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125H20.bB6Ng01-125H20.g
ACCDH928112DH928113
length1,1751,120
definitionDH928112|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H20, 5' end.DH928113|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
acaaaacacccatggaaggagttacagaaacaaagtatggagctgagatg
aaaggatggaccatgtagagactgccatatccagggatccaccccataat
cagcttccaaatgctgacaccattgcatacactagcaagattttactgaa
aggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcacagggcttcc
caatggaggagctagagaaagtactcaaggagctaaagggatcttcaacc
cttataggtggacaacattattgaactaccagtacccctgagctcttgac
tctagctgcatatgtatcaagattggcctaattcgtcatcactgaaagag
agtccattgaaccgcagactttggtggctcggtacaggggacgcctggtc
cataggagggaagatggtggtgtag
gaattcaggtctttctggaagagactcatgaagctttcctaggggctgag
taggggagcgcatgttatcagaagagaaggaaaaggcgaacgtctctaca
ggttattcttctctccctccatctcctctcagggagatctaaactggtac
cctgtttctccagacagaggagattctcctggtccctccatctctctttg
tccccagtctcactatattgagcaggaggcaaagccaggaagagtgaggg
gcttgcagccagaggttaaacttgagttcaggtctcttgactttaggttt
gtgaggctgcaggaacccagagcccccttcagtggcaaggacagagagct
tcatgtcactcttcacttcattcactggtaccctcggcagagcagaacca
caatgttctggacctcagtggagagtgaagggttagccagacacagagat
gactgtgatgccaaattataggctgcaagtcaccactgtctgctgcttcc
tctcatggatcatgtgggctgcacagcagttcacttctaagggacccctt
gttcccgtctcagcacacaggagacctagacatctgggtgtggctggagc
tggctacaggcatctcaggtttctttcagttccagtacacagaaagccat
cacaatatctcttgtgataggatttaagaccagatttctaagaagcaccg
tcccaggtcatagccagctccctggaatggaaagttgggctaaactaagg
aggctctgcttctgaagggacaacacacagagaatttatccccagggaga
acacttggggataaaaatgtggaaacccacccctcctgactgtgctgggg
ctgagcatcagagactggaagtgaagacttcctgtcttgtttgctcccca
tcctgaactttgcatctgctacgggatgctgcaggtgctctcagcgagta
gttctgtggcaaatcaagacagcactcagcctgtggcagaagccaagaca
gcactcaagcctgtgcagatcagaacagcactcagcctgtgcaaacacac
ctctagatctctgctggatcttactgtcaaagtcagcacaaatagtggct
cttatgcatgctggctaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_8312088_8313233
seq2: B6Ng01-125H20.g_67_1186 (reverse)

seq1  ACCTAGCCCAGGCATGCATAAGAGGCCCACATTTGGTGCTGGGAGCCTTT  50
      ||||||||   |||||||||||||  ||||  || |||||    | ||||
seq2  ACCTAGCC--AGCATGCATAAGAG--CCACTATTTGTGCT----GACTTT  42

seq1  GGCAGCTGAGATCCCAGACAGAAGACTCTAGAGGTGTGCTCTGCCACAGG  100
      | ||| | |||| |||| ||| ||| |||||||||||| | || ||||||
seq2  GACAG-TAAGAT-CCAG-CAG-AGA-TCTAGAGGTGTG-TTTG-CACAGG  85

seq1  CTGAGTGCCTGTCCTTGGCTCTGCCACAGGC-TGAGTGCCTGTCCTTGGC  149
      ||||||| |||| ||  | |||| ||||||| |||||| |||| ||||||
seq2  CTGAGTG-CTGTTCT--GATCTG-CACAGGCTTGAGTG-CTGT-CTTGGC  129

seq1  -TCTGCCACAGGCTGAGTGCCTGTCCTTGGCTCTGCCACAGGACTTACTC  198
       |||||||||||||||||| |||||  | | | |||||||| || |||||
seq2  TTCTGCCACAGGCTGAGTG-CTGTC--TTGATTTGCCACAGAAC-TACTC  175

seq1  GCTGGAGAGCACCTGCAGCATCCCGGTAGCAGATGGCAGAGTTCAGGGAT  248
      ||| |||||||||||||||||||| ||||||||| ||| |||||| ||||
seq2  GCT-GAGAGCACCTGCAGCATCCC-GTAGCAGAT-GCAAAGTTCA-GGAT  221

seq1  GGGGAGCAAACAAGACAGGAAGTCTTCACCTTCCAGTCTCTGATGCTCAG  298
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGGGAGCAAACAAGACAGGAAGTCTTCA-CTTCCAGTCTCTGATGCTCAG  270

seq1  CCCCAGCACAGTCAGGAGGGGTGGG-TTCCACATTTTTATCCCCAAGTGT  347
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCCAGCACAGTCAGGAGGGGTGGGTTTCCACATTTTTATCCCCAAGTGT  320

seq1  TCTCCCTGGGGATAAATTCTCTGTGTGTTGTCCCTTCAGAAGCAGAGCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGGGGATAAATTCTCTGTGTGTTGTCCCTTCAGAAGCAGAGCCT  370

seq1  CCTTAGTTTAGCCCAACTTTCCATTCCAGGGAGCTGGCTATGACCTGGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTTTAGCCCAACTTTCCATTCCAGGGAGCTGGCTATGACCTGGGA  420

seq1  CGGTGCTTCTTAGAAATCTGGTCTTAAATCCTATCACAAGAGATATTGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCTTCTTAGAAATCTGGTCTTAAATCCTATCACAAGAGATATTGTG  470

seq1  ATGGC-TTCTGTGTACTGGAACTGAAAGAAACCTGAGATGCCTGTAGCCA  546
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTCTGTGTACTGGAACTGAAAGAAACCTGAGATGCCTGTAGCCA  520

seq1  GCTCCAGCCACACCCAGATGTCTAGGTCTCCTGTGTGCTGAGACGGGAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGCCACACCCAGATGTCTAGGTCTCCTGTGTGCTGAGACGGGAAC  570

seq1  AAGGGGTCCCTTAGAAGTGAACTGCTGTGCAGCCCACATGATCCATGAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTCCCTTAGAAGTGAACTGCTGTGCAGCCCACATGATCCATGAGA  620

seq1  GGAAGCAGCAGACAGTGGTGACTTGCAGCCTATAATTTGGCATCACAGTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGCAGACAGTGGTGACTTGCAGCCTATAATTTGGCATCACAGTC  670

seq1  ATCTCTGTGTCTGGCTAACCCTTCACTCTCCACTGAGGTCCAGAACATTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTGTCTGGCTAACCCTTCACTCTCCACTGAGGTCCAGAACATTG  720

seq1  TGGTTCTGCTCTGCCGAGGGTACCAGTGAATGAAGTGAAGAGTGACATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGCTCTGCCGAGGGTACCAGTGAATGAAGTGAAGAGTGACATGA  770

seq1  AGCTCTCTGTCCTTGCCACTGAAGGGGGCTCTGGGTTCCTGCAGCCTCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCTGTCCTTGCCACTGAAGGGGGCTCTGGGTTCCTGCAGCCTCAC  820

seq1  AAACCTAAAGTCAAGAGACCTGAACTCAAGTTTAACCTCTGGCTGCAAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAAAGTCAAGAGACCTGAACTCAAGTTTAACCTCTGGCTGCAAGC  870

seq1  CCCTCACTCTTCCTGGCTTTGCCTCCTGCTCAATATAGTGAGACTGGGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTCTTCCTGGCTTTGCCTCCTGCTCAATATAGTGAGACTGGGGA  920

seq1  CAAAGAGAGATGGAGGGACCAGGAGAATCTCCTCTGTCTGGAGAAACAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAGATGGAGGGACCAGGAGAATCTCCTCTGTCTGGAGAAACAGG  970

seq1  GTACCAGTTTAGATCTCCCTGAGAGGAGATGGAGGGAGAGAAGAATAACC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGTTTAGATCTCCCTGAGAGGAGATGGAGGGAGAGAAGAATAACC  1020

seq1  TGTAGAGACGTTCGCCTTTTCCTTCTCTTCTGATAACATGCGCTCCCCTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGACGTTCGCCTTTTCCTTCTCTTCTGATAACATGCGCTCCCCTA  1070

seq1  CTCAGCCCCTAGGAAAGCTTCATGAGTCTCTTCCAGAAAGACCTGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCCCTAGGAAAGCTTCATGAGTCTCTTCCAGAAAGACCTGAATTC  1120