BAC Information

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BAC

Clone NameB6Ng01-125I20
Chromosome12 (Build37)
Map Location 45,810,350 - 45,938,262
singlet/doubletdoublet
Overlap genenone
Upstream geneENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025
Downstream geneStxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125I20.bB6Ng01-125I20.g
ACCDH928158DH928159
length1,148337
definitionDH928158|Mus musculus domesticus DNA, BAC clone: B6Ng01-125I20, 5' end.DH928159|Mus musculus domesticus DNA, BAC clone: B6Ng01-125I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,937,098 - 45,938,262)(45,810,350 - 45,810,686)
sequence
gaattctcaagaagttgaaatacaaatggccagtaagaaatgaaaaaaaa
gtgtgcaacctcattaaccatcagagaaataaaagttacagcttatatta
taccagtcagttattatgaaatgaaattacagaaaattgtggcaaaaagg
tattgcctgaatagtggccaaaccctttcaggcatccatgaacaggagcc
tggataaaacagaataagccatggctttccatcaagctggagcaatgaag
gtaggaattgagcaagagatgcagtggaaagaatgtgttttcctaggtcc
taactcttaaagggaaagtgagatgggccatggacaagtatggcacatga
aatgtgagatcacctcagagtactggcagcatttcaaagctctgttatgt
atacaaggacttaaaaaattaagactctgataaacatacctttatgttga
atttattgcaaaatatagaaactttctctttaaatcatgggtcaatttct
gtatctttgtctattcaaggatgttaaagcattcaaatttttactataaa
tatgaacattatctttatcctcaaacaataaattaaaacccagaactaat
acacaaaggaaagaactgtaattatacatacaaaattaaatgttatccca
ggacttaaatatcatcacaccagtggatattccagtgccttaaaacttga
tttatccattaaaagctattttctcactatctgactctagtgtcctccag
acatagcaaagtatatggcctatgttgctctcttccttggagttcatttc
ttgtgtactcctgtctcagaaatagaatgcatcactgacactgctctggg
ttatactgcactcacctttaactgtattaaattactggaaatgggaaaca
gatggacacttgttcccactccatctcttgtaatagatagtgtgattaat
gcttccatggggttttcctcctcactgccaattgaaaggcactccaatgg
gctctcaaaaacatctgagaacaatgttccatcacttctcttgcatttac
tcatgaatactgaaaaaaaatcagcatcaatatcttgctctttgttttct
ctctattgatttgccacttgactttgctttttgcaggattgaacctga
agccaaggagaagaaacaatgagtaagtagctgttgtttattttgaatga
ttagaaggtacattggtagagaaataattttgaacaagctttctgtggca
ttttcaagtattttagaagttgacagaaaggacatctttaggacagtttc
ttttttaattatgttctactgaaatatgagttcttttcttctaagtaaag
tactttttacagaagaaatatttttgaaggcaaattggccatcattaaaa
gagatagatggatggatggatagatagatatataggtagcagaataagac
aggatagggttaaaatgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_45937098_45938262
seq2: B6Ng01-125I20.b_50_1197 (reverse)

seq1  TCAGTTTCAACTCCTGCCAAAAAGCAAAGTCAAGTGGCAAAACCATTAGA  50
      |||| ||||| ||||| ||||||||||||||||||||| ||| || ||||
seq2  TCAGGTTCAA-TCCTG-CAAAAAGCAAAGTCAAGTGGC-AAATCAATAGA  47

seq1  GGAAAACCAAAGAGGCAAAGATAATTTGATGCCTGAATTTTTTTTTTCAG  100
      |  ||| |||||||   ||||||  |||||| ||||   |||||||||||
seq2  GAGAAAACAAAGAG--CAAGATA--TTGATG-CTGA---TTTTTTTTCAG  89

seq1  TATCCATGAGTAAATGCCAAGGAGGAAGTGATGGACCATTGGTTCTCAGA  150
      ||| |||||||||||| ||||   ||||||||||| |||| |||||||||
seq2  TATTCATGAGTAAATG-CAAG--AGAAGTGATGGAACATT-GTTCTCAGA  135

seq1  TGTTTTGAGGAGCCCCATTGGAGTGCCCTTTCAATTGGCAGTGAGGAGGA  200
      ||||||   ||| |||||||||||| ||||||||||||||||||||||||
seq2  TGTTTTTGAGAG-CCCATTGGAGTG-CCTTTCAATTGGCAGTGAGGAGGA  183

seq1  AAACCCCATGGAAGCATTAATCACACTATCTAATTACAAGAGATGGAGTG  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAACCCCATGGAAGCATTAATCACACTATCT-ATTACAAGAGATGGAGTG  232

seq1  GG-ACAAGTGTCCATCTGTTTCCCATTTCCAGTAATTTAATACAGTTAAA  299
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAGTGTCCATCTGTTTCCCATTTCCAGTAATTTAATACAGTTAAA  282

seq1  GGTGAGTGCAGTATAACCCAGAGCAGTGTCAGTGATGCATTCTATTTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTGCAGTATAACCCAGAGCAGTGTCAGTGATGCATTCTATTTCTG  332

seq1  AGACAGGAGTACACAAGAAATGAACTCCAAGGAAGAGAGCAACATAGGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAGTACACAAGAAATGAACTCCAAGGAAGAGAGCAACATAGGCC  382

seq1  ATATACTTTGCTATGTCTGGAGGACACTAGAGTCAGATAGTGAGAAAATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTTGCTATGTCTGGAGGACACTAGAGTCAGATAGTGAGAAAATA  432

seq1  GCTTTTAATGGATAAATCAAGTTTTAAGGCACTGGAATATCCACTGGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAATGGATAAATCAAGTTTTAAGGCACTGGAATATCCACTGGTGT  482

seq1  GATGATATTTAAGTCCTGGGATAACATTTAATTTTGTATGTATAATTACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATATTTAAGTCCTGGGATAACATTTAATTTTGTATGTATAATTACA  532

seq1  GTTCTTTCCTTTGTGTATTAGTTCTGGGTTTTAATTTATTGTTTGAGGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCCTTTGTGTATTAGTTCTGGGTTTTAATTTATTGTTTGAGGAT  582

seq1  AAAGATAATGTTCATATTTATAGTAAAAATTTGAATGCTTTAACATCCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAATGTTCATATTTATAGTAAAAATTTGAATGCTTTAACATCCTT  632

seq1  GAATAGACAAAGATACAGAAATTGACCCATGATTTAAAGAGAAAGTTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGACAAAGATACAGAAATTGACCCATGATTTAAAGAGAAAGTTTCT  682

seq1  ATATTTTGCAATAAATTCAACATAAAGGTATGTTTATCAGAGTCTTAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGCAATAAATTCAACATAAAGGTATGTTTATCAGAGTCTTAATT  732

seq1  TTTTAAGTCCTTGTATACATAACAGAGCTTTGAAATGCTGCCAGTACTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTCCTTGTATACATAACAGAGCTTTGAAATGCTGCCAGTACTCT  782

seq1  GAGGTGATCTCACATTTCATGTGCCATACTTGTCCATGGCCCATCTCACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGATCTCACATTTCATGTGCCATACTTGTCCATGGCCCATCTCACT  832

seq1  TTCCCTTTAAGAGTTAGGACCTAGGAAAACACATTCTTTCCACTGCATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTAAGAGTTAGGACCTAGGAAAACACATTCTTTCCACTGCATCT  882

seq1  CTTGCTCAATTCCTACCTTCATTGCTCCAGCTTGATGGAAAGCCATGGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAATTCCTACCTTCATTGCTCCAGCTTGATGGAAAGCCATGGCT  932

seq1  TATTCTGTTTTATCCAGGCTCCTGTTCATGGATGCCTGAAAGGGTTTGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTTTTATCCAGGCTCCTGTTCATGGATGCCTGAAAGGGTTTGGC  982

seq1  CACTATTCAGGCAATACCTTTTTGCCACAATTTTCTGTAATTTCATTTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTCAGGCAATACCTTTTTGCCACAATTTTCTGTAATTTCATTTCA  1032

seq1  TAATAACTGACTGGTATAATATAAGCTGTAACTTTTATTTCTCTGATGGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACTGACTGGTATAATATAAGCTGTAACTTTTATTTCTCTGATGGT  1082

seq1  TAATGAGGTTGCACACTTTTTTTTCATTTCTTACTGGCCATTTGTATTTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGGTTGCACACTTTTTTTTCATTTCTTACTGGCCATTTGTATTTC  1132

seq1  AACTTCTTGAGAATTC  1165
      ||||||||||||||||
seq2  AACTTCTTGAGAATTC  1148

seq1: chr12_45810350_45810686
seq2: B6Ng01-125I20.g_73_409

seq1  AGCCAAGGAGAAGAAACAATGAGTAAGTAGCTGTTGTTTATTTTGAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGAGAAGAAACAATGAGTAAGTAGCTGTTGTTTATTTTGAATGA  50

seq1  TTAGAAGGTACATTGGTAGAGAAATAATTTTGAACAAGCTTTCTGTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGTACATTGGTAGAGAAATAATTTTGAACAAGCTTTCTGTGGCA  100

seq1  TTTTCAAGTATTTTAGAAGTTGACAGAAAGGACATCTTTAGGACAGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGTATTTTAGAAGTTGACAGAAAGGACATCTTTAGGACAGTTTC  150

seq1  TTTTTTAATTATGTTCTACTGAAATATGAGTTCTTTTCTTCTAAGTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATTATGTTCTACTGAAATATGAGTTCTTTTCTTCTAAGTAAAG  200

seq1  TACTTTTTACAGAAGAAATATTTTTGAAGGCAAATTGGCCATCATTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTACAGAAGAAATATTTTTGAAGGCAAATTGGCCATCATTAAAA  250

seq1  GAGATAGATGGATGGATGGATAGATAGATATATAGGTAGCAGAATAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGATGGATGGATGGATAGATAGATATATAGGTAGCAGAATAAGAC  300

seq1  AGGATAGGGTTAAAATGTGTGTGTGTGTGTGTGTGTG  337
      |||||||||||||||||||||||||||||||||||||
seq2  AGGATAGGGTTAAAATGTGTGTGTGTGTGTGTGTGTG  337