BAC Information

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BAC

Clone NameB6Ng01-125M21
Chromosome12 (Build37)
Map Location 9,240,256 - 9,254,575
singlet/doubletdoublet
Overlap genenone
Upstream gene1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32
Downstream geneLOC633030, LOC100042238, Osr1, LOC382567
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125M21.bB6Ng01-125M21.g
ACCDH928339DH928340
length1,0741,191
definitionDH928339|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M21, 5' end.DH928340|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,240,256 - 9,241,315)(9,253,365 - 9,254,575)
sequence
gaattccaaatgattcatgtaaatcctctgcccgatcctcaagtaacttc
atggtggagaaagtcaacagacatgactctagccaggtgatcaaggcccg
tggcagttgtgtttcttaagtggtgcatcagctctgcagtcttctttcca
aaattcaaaacaaataggagaatatttttaccaaatatgtgacccttact
catcaaagctgtcatgatcatcagaaacaaggaaactgtcacaggaaaag
ctgcctatgggaaaatcgtagttaaattcaacatatcctagagaggctcc
tggaccaaaaaaatgtcactagggaaaaagtaagtgaagcactatcagaa
atgagagtaatggaaatgactgggttcatttactataatgaatatactgt
aataatattggatactcataagaagaagctttgtaaagatatgggagctc
tatgctatctttatgatgtttggatgaatctaattaatgtctatttgaaa
atgaacatttcagcaagtagactgaagaagaaagcaaaaagatttatgga
ttctcactttttatttgtcactatgtgtgtgtgtgtgtgtgtgtgtgcac
atgtatgtggatgccagaggtagatgttaggagtctttctctacaactct
ccaccttatatttcttaaagatttgttttcatttgtgtacatgtgtctat
gtctgtctgagtgtgtggcacatgtgtgtagacatctgcagaggccagaa
gagggcagcggttcccttggaactaaagaaaattctgaaaacggaactta
catcctctgcgagaatgctaagtgttcctgaccattgggccatctctgca
gctctaaccaacatattttttcagatagtgtatcttatgaattggctaga
ttggtggctggccagcaagtttctgagtgtcttccctcccctgaatcacc
tatactagaatacagtcgtgtagcaccatgccagggtgctacacgagtgc
tggggtgtgacttaaggttccccgctccttgtagctagccagttcgcctc
attgaacttttctgccagcccact
gaattcatctccttcgagatgcctggacgttgtccaggaacatgtcctta
tctcccaccatctcctcaagtcatcatgactcataccctagctaacttca
cgaaatggctctacccagagtgccaatgattgagctttgacaggaccaca
gtttattttttgtccttgtcacaccaaacctccttgtagtgaggacattg
aaatacatctatttgtgagtcactttctgcatttctacctgaaacacaga
gatgctctgccgaagtctaggtttgcccctcattgcccctgtctcagcat
gtgatttctgtatcatgagcataaacaatatccttattttgatgatacca
aacctatatcactaatattaatccatacatttacccatgaattcctgatt
ctctctctctctctctctccctccctccctcgctccctcactcccttact
cctttatctgcctctgtctctttcatcctctcctccttccatctccattt
cttactcaaagctcatctattcatcttggtaaactacactattttcatgt
aatttttggaaacagtgatatagtctctttgtggataaggagacagctca
aaaggtaaagcatttattagcctaaggattgaattcagatggggcaggac
tgaaatcccagtactggcgaggcagatcctgccttgctttatgagtaagc
tggctagctagactagatggactggtaagccttgggctcattgagagatt
ctgtctcaatatataaggctgagagagattgagaaagatgcttaacatca
gcctcaagcctctgcacacatccattgacacatgctcttgtgcttatttg
ccacacaaacatgtacttgttggctgtaaataaaggtcccacatgtttat
tccctttccttcattccccacacttattttatcagcaggttttgcaaaat
cacttccaaacaattctaaatttgactacactgtatcctacaacgcatcg
aagtattcatctgagtcactgactctctgagtggcaagtgtaagatcttt
cttcctggcgctgtcctttctggatccatgcaatctaattctttaacaca
cacccaatttagtgcttggcttttcttatagaccttattctaaacattta
gtcacaaaacaaaatggtgggtaatgcgagaagaatacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_9240256_9241315
seq2: B6Ng01-125M21.b_55_1118

seq1  AAATGATTCATGTAAATCCTCTGCCCGATCCTCAAGTAACTTCATGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTCATGTAAATCCTCTGCCCGATCCTCAAGTAACTTCATGGTGG  50

seq1  AGAAAGTCAACAGACATGACTCTAGCCAGGTGATCAAGGCCCGTGGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCAACAGACATGACTCTAGCCAGGTGATCAAGGCCCGTGGCAGT  100

seq1  TGTGTTTCTTAAGTGGTGCATCAGCTCTGCAGTCTTCTTTCCAAAATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCTTAAGTGGTGCATCAGCTCTGCAGTCTTCTTTCCAAAATTCA  150

seq1  AAACAAATAGGAGAATATTTTTACCAAATATGTGACCCTTACTCATCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAGGAGAATATTTTTACCAAATATGTGACCCTTACTCATCAAA  200

seq1  GCTGTCATGATCATCAGAAACAAGGAAACTGTCACAGGAAAAGCTGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATGATCATCAGAAACAAGGAAACTGTCACAGGAAAAGCTGCCTA  250

seq1  TGGGAAAATCGTAGTTAAATTCAACATATCCTAGAGAGGCTCCTGGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAATCGTAGTTAAATTCAACATATCCTAGAGAGGCTCCTGGACCA  300

seq1  AAAAAATGTCACTAGGGAAAAAGTAAGTGAAGCACTATCAGAAATGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTCACTAGGGAAAAAGTAAGTGAAGCACTATCAGAAATGAGAG  350

seq1  TAATGGAAATGACTGGGTTCATTTACTATAATGAATATACTGTAATAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAAATGACTGGGTTCATTTACTATAATGAATATACTGTAATAATA  400

seq1  TTGGATACTCATAAGAAGAAGCTTTGTAAAGATATGGGAGCTCTATGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATACTCATAAGAAGAAGCTTTGTAAAGATATGGGAGCTCTATGCTA  450

seq1  TCTTTATGATGTTTGGATGAATCTAATTAATGTCTATTTGAAAATGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGATGTTTGGATGAATCTAATTAATGTCTATTTGAAAATGAACA  500

seq1  TTTCAGCAAGTAGACTGAAGAAGAAAGCAAAAAGATTTATGGATTCTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAAGTAGACTGAAGAAGAAAGCAAAAAGATTTATGGATTCTCAC  550

seq1  TTTTTATTTGTCACTATGTGTGTGTGTGTGTGTGTGTGTGCACATGTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTGTCACTATGTGTGTGTGTGTGTGTGTGTGTGCACATGTATG  600

seq1  TGGATGCCAGAGGTAGATGTTAGGAGTCTTTCTCTACAACTCTCCACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCCAGAGGTAGATGTTAGGAGTCTTTCTCTACAACTCTCCACCTT  650

seq1  ATATTTCTTAAAGATTTGTTTTCATTTGTGTACATGTGTCTATGTCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTTAAAGATTTGTTTTCATTTGTGTACATGTGTCTATGTCTGTC  700

seq1  TGAGTGTGTGGCACATGTGTGTAGACATCTGCAGAGGCCAGAAGAGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGTGGCACATGTGTGTAGACATCTGCAGAGGCCAGAAGAGGGCA  750

seq1  GCGGTTCCCTTGGAACTAAAGAAAATTCTGAAAACGGAACTTACATCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTCCCTTGGAACTAAAGAAAATTCTGAAAACGGAACTTACATCCTC  800

seq1  TGCGAGAATGCTAAGTGTTCCTGACCATTGGGCCATCTCTGCAGCTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGAATGCTAAGTGTTCCTGACCATTGGGCCATCTCTGCAGCTCTAA  850

seq1  CCAACATATTTTTTCAGATAGTGTATCTTATGAATTGGCTAGATTGGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATATTTTTTCAGATAGTGTATCTTATGAATTGGCTAGATTGGTGG  900

seq1  CTGGCCAGCAAG-TTCTGAGTGTCTTCCCTCCCCTGAATCACCTATACTA  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAGCAAGTTTCTGAGTGTCTTCCCTCCCCTGAATCACCTATACTA  950

seq1  GAATACAGTCGTGTAGCACCATGCCAGGGTGCTACACGAGTGCTGGGGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGTCGTGTAGCACCATGCCAGGGTGCTACACGAGTGCTGGGGTG  1000

seq1  TGAACTTAGGTT-CTCGCTCC-TGTAGGCTAGGCAGTTCG-CTCAGTGAA  1046
      |||  | ||||| | |||||| |||| ||||| ||||||| |||| ||||
seq2  TGACTTAAGGTTCCCCGCTCCTTGTA-GCTAGCCAGTTCGCCTCATTGAA  1049

seq1  CTTTTCTG-CAGCCC  1060
      |||||||| ||||||
seq2  CTTTTCTGCCAGCCC  1064

seq1: chr12_9253365_9254575
seq2: B6Ng01-125M21.g_67_1257 (reverse)

seq1  CAGGTATTC-TCT-GCATTTACCACCATTTTTTTGTTTTTGTGAAACTAA  48
      ||||||||| ||| |||||  ||||||||||     |||||||  |||||
seq2  CAGGTATTCTTCTCGCATTACCCACCATTTT----GTTTTGTG--ACTAA  44

seq1  AATAGTTTTAGAAAATAAAGTCTATTAAAGAACAGCAAAGCACTAAATTT  98
      |   ||||   | ||||| ||||||  ||||| ||| |||||||||||| 
seq2  A--TGTTT---AGAATAAGGTCTAT--AAGAAAAGCCAAGCACTAAATTG  87

seq1  GGGGTGTGTGTAAAGAA-TAGATTGCATGGGATTCAGGAAAGGGACAGCG  147
      || |||||| ||||||| |||||||||| |||| |||  || ||||||| 
seq2  GGTGTGTGT-TAAAGAATTAGATTGCAT-GGATCCAG--AAAGGACAGC-  132

seq1  GCCAGTGAGAAAGATCTTACACTTGCCACTTCAGAGAAGTCAGTGACTCA  197
      |||||  |||||||||||||||||||||| |||||| |||||||||||||
seq2  GCCAGGAAGAAAGATCTTACACTTGCCAC-TCAGAG-AGTCAGTGACTCA  180

seq1  GATGAATACTTCGATGCGTTGTAGGATACAGTGTAGTCAAATTTAAGAAT  247
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GATGAATACTTCGATGCGTTGTAGGATACAGTGTAGTCAAATTT-AGAAT  229

seq1  TGTTTGGAAGTGATTTTTGCCAAAACCTGCTGATAAAATAAGTGTGGGGA  297
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  TGTTTGGAAGTGATTTT--GCAAAACCTGCTGATAAAATAAGTGTGGGGA  277

seq1  ATGAAGGAAAGGGAATAAACATGTGGGACCTTTATTTACAGCCAACAAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAAAGGGAATAAACATGTGGGACCTTTATTTACAGCCAACAAGT  327

seq1  ACATGTTTGTGTGGCAAATAAGCACAAGAGCATGTGTCAATGGATGTGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTGTGTGGCAAATAAGCACAAGAGCATGTGTCAATGGATGTGTG  377

seq1  CAGAGGCTTGAGGCTGATGTTAAGCATCTTTCTCAATCTCTCTCAGCCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCTTGAGGCTGATGTTAAGCATCTTTCTCAATCTCTCTCAGCCTT  427

seq1  ATATATTGAGACAGAATCTCTCAATGAGCCCAAGGCTTACCAGTCCATCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGAGACAGAATCTCTCAATGAGCCCAAGGCTTACCAGTCCATCT  477

seq1  AGTCTAGCTAGCCAGCTTACTCATAAAGCAAGGCAGGATCTGCCTCGCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGCTAGCCAGCTTACTCATAAAGCAAGGCAGGATCTGCCTCGCCA  527

seq1  GTACTGGGATTTCAGTCCTGCCCCATCTGAATTCAATCCTTAGGCTAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGATTTCAGTCCTGCCCCATCTGAATTCAATCCTTAGGCTAATA  577

seq1  AATGCTTTACCTTTTGAGCTGTCTCCTTATCCACAAAGAGACTATATCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTACCTTTTGAGCTGTCTCCTTATCCACAAAGAGACTATATCAC  627

seq1  TGTTTCCAAAAATTACATGAAAATAGTGTAGTTTACCAAGATGAATAGAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCAAAAATTACATGAAAATAGTGTAGTTTACCAAGATGAATAGAT  677

seq1  GAGCTTTGAGTAAGAAATGGAGATGGAAGGAGGAGAGGATGAAAGAGACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTGAGTAAGAAATGGAGATGGAAGGAGGAGAGGATGAAAGAGACA  727

seq1  GAGGCAGATAAAGGAGTAAGGGAGTGAGGGAGCGAGGGAGGGAGGGAGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGATAAAGGAGTAAGGGAGTGAGGGAGCGAGGGAGGGAGGGAGAG  777

seq1  AGAGAGAGAGAGAGAATCAGGAATTCATGGGTAAATGTATGGATTAATAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAATCAGGAATTCATGGGTAAATGTATGGATTAATAT  827

seq1  TAGTGATATAGGTTTGGTATCATCAAAATAAGGATATTGTTTATGCTCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATATAGGTTTGGTATCATCAAAATAAGGATATTGTTTATGCTCAT  877

seq1  GATACAGAAATCACATGCTGAGACAGGGGCAATGAGGGGCAAACCTAGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGAAATCACATGCTGAGACAGGGGCAATGAGGGGCAAACCTAGAC  927

seq1  TTCGGCAGAGCATCTCTGTGTTTCAGGTAGAAATGCAGAAAGTGACTCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGCAGAGCATCTCTGTGTTTCAGGTAGAAATGCAGAAAGTGACTCAC  977

seq1  AAATAGATGTATTTCAATGTCCTCACTACAAGGAGGTTTGGTGTGACAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATGTATTTCAATGTCCTCACTACAAGGAGGTTTGGTGTGACAAG  1027

seq1  GACAAAAAATAAACTGTGGTCCTGTCAAAGCTCAATCATTGGCACTCTGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAAATAAACTGTGGTCCTGTCAAAGCTCAATCATTGGCACTCTGG  1077

seq1  GTAGAGCCATTTCGTGAAGTTAGCTAGGGTATGAGTCATGATGACTTGAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCCATTTCGTGAAGTTAGCTAGGGTATGAGTCATGATGACTTGAG  1127

seq1  GAGATGGTGGGAGATAAGGACATGTTCCTGGACAACGTCCAGGCATCTCG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGTGGGAGATAAGGACATGTTCCTGGACAACGTCCAGGCATCTCG  1177

seq1  AAGGAGATGAATTC  1211
      ||||||||||||||
seq2  AAGGAGATGAATTC  1191