BAC Information

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BAC

Clone NameB6Ng01-126B14
Chromosome12 (Build37)
Map Location 106,708,491 - 106,833,445
singlet/doubletdoublet
Overlap geneD430019H16Rik, Bdkrb2
Upstream geneGsc, Dicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081
Downstream geneBdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126B14.bB6Ng01-126B14.g
ACCDH928557DH928558
length1,1831,075
definitionDH928557|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B14, 5' end.DH928558|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,832,237 - 106,833,445)(106,708,491 - 106,709,011)
sequence
gaattcatctgtttattccagtgcacaggagagtcgtgtgctttcacaga
gcgctcctccctcgttggtaccctggccacttcctctgcacagtacagag
ctctctgcatctttcactggacacgatttgtcatcaggatgctgacacaa
ggcacaagggggcttccctcccacagtcctagttgcagaccctgcaggga
cccagttccagacccttcagccaccccgagggacccaggctgtggccagc
cgtgacccttgcacttgtagcccaccagctcctcttctgagaacggggcc
ctgcttctccttcacagtatgggtgtgtcatttgtttccttcttctggct
acagtgtcctgtgtgcttgttggactagtgtccgggaagatggggtggaa
aaagaatttcctggggtccactctgttaggaaattcaaagtcagattggt
ggggatttatgggctctttgccacataggctctcccttggctccagcctg
gccagaaactccagtgaactctgctcatttcccccagtctccgtagcctc
tggctgtcaagtggagagctcctaagtggcttggtgtaggaggctgtttg
atatgctcctcatatgtccccaggggccagccagtttgtagcgacattgt
aatggttgagtctgaaatgcgcttcccttcgttcctggctgctggcccta
ttttggaaagtgatagaaccttttaggatgtaggaccttataggtgaaag
gtcactaggggcagacatttgacagtcataggcctccctggttccagctg
tgtctccgtttactggtcatctctgaagtatgatgcttctgtcacgcact
ctgtttaccatacagttcctgctgcaccggaccaaagcctttcttgacac
tgagagacaaaaatacccttctctttcccttaagtggcctctgtcaagaa
gtttgtcacagtcctagaaagtaccgatatggacgcatggaaaattaact
cccatggaagattctgactacgagtatggtgtctgtcacctgagctctgc
agagttgtgggggcactgtctccactgacactgagctcacctagaccttg
aaagttctaacgagaccaattgccctgaagccatcgaaagctaccatctg
atgggaacctgctcaatatgccgtgtgctgtcc
gaattctcagctcagcctgtaccatgcctacctggatgctgccacgttcc
caccttgatgataatggactgaatctctgaacctttaagccagacccaat
tgttgtccttataagagttgccttggtcatggtctgttcacaatagtaaa
actctaattaaggcagaaattggtaccagcatagtggggtattcctgtga
cagcttgaccatgttttggggaggactgtggaaggactttggaacttata
gctagaagaaccattggggtgttaagagctctgtggcaggtgttagagga
gcttgggagataatgttgagaacagtgcagaagatggaggtctggcttgt
gaaatttcagagggaagattaaagactcttagcagggctgttgctgtttt
ggttagctggagctgaagaatcagctgtgattaacaggataccagaacca
ctaaagtggaacctgtgcattactgggacaactgatgctggttagctgga
gctaagaaattggcgatgattaagaagagattagactcattgaggtgaaa
tcttctgggaagtgttttctgagaacacaaagaagctgtgttccagagat
agccaaggttgtaccttatgctgcagctggacttagtaatatgtaagagt
cacccaggtggtactcattttgaaggcatgaaggggtcatgaagagcagc
tgaggcttggcactgtgagagtccatggaaggccattggtgaaggtgcag
cctcagttgcagttgacagcccagtcctgaaggggccaaaaaggacttga
ggcctagcactgtgaaagggagcctgtgagaggctattggtgaagcctga
ttgcagtggagactggctttcagcagctaggagtagggtcttaaagccat
gcccacagtgacacacctacttcacaggccacactttcaatagtgcactt
ctgggcaagctaatgcaaccatcccagttacttctgggatgcggcagaga
cacttttcccctcagcctgtagtctgcagctgttattaagaatgtcagga
agatggagggggggtgcaagataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_106832237_106833445
seq2: B6Ng01-126B14.b_48_1230 (reverse)

seq1  GGACAGCACACGTGCATATTGAGCAGGTCTCCCATCAGGGATATGAGGAT  50
      |||||||||||| ||||||||||||||| ||||||||       || | |
seq2  GGACAGCACACG-GCATATTGAGCAGGT-TCCCATCA-------GATGGT  41

seq1  AGCCTCTCGGATAGCTTCAGGGCCACTGGGTTCTCCGTTAGAACCTTCTC  100
      || || || ||| |||||||||| | |||  ||| |||||||||  | ||
seq2  AG-CTTTC-GATGGCTTCAGGGCAATTGG--TCT-CGTTAGAAC--TTTC  84

seq1  AGGGTCCTTAGGTGAGCTCAGGTGTCAGTGGAGACAGTTGCCCCACCAAC  150
      | ||||  |||||||||||| |||||||||||||||| ||||||  ||||
seq2  AAGGTC--TAGGTGAGCTCA-GTGTCAGTGGAGACAG-TGCCCCCACAAC  130

seq1  TCTGCCAGAGGCTCAGGTGACAGACACCATACTCGTAGTTCCAGAATCTT  200
      |||| |||| |||||||||||||||||||||||||||||  |||||||||
seq2  TCTG-CAGA-GCTCAGGTGACAGACACCATACTCGTAGT--CAGAATCTT  176

seq1  CCATGGGAGTTAATTTTTCCATGCGTCCATATCGGTTACTTTCTAGGACC  250
      ||||||||||||| ||||||||||||||||||||| |||||||||||| |
seq2  CCATGGGAGTTAA-TTTTCCATGCGTCCATATCGG-TACTTTCTAGGA-C  223

seq1  TGTGACAAACTTCTTGACAGAGGCCACTTAAGGGAAAGAGAAGGGTA-TT  299
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGACAAACTTCTTGACAGAGGCCACTTAAGGGAAAGAGAAGGGTATTT  273

seq1  TTGTCTCTCAGTGTCAAGAAAGGCTTTGGTCCGGTGCAGCAGGAACTGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTCAGTGTCAAGAAAGGCTTTGGTCCGGTGCAGCAGGAACTGTA  323

seq1  TGGTAAACAGAGTGCCTGACAGAAGCATCATACTTCAGAGATGACCAGTA  399
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGTAAACAGAGTGCGTGACAGAAGCATCATACTTCAGAGATGACCAGTA  373

seq1  AACGGAGACACAGCTGGAACCAGGGAGGCCTATGACTGTCAAATGTCTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAGACACAGCTGGAACCAGGGAGGCCTATGACTGTCAAATGTCTGC  423

seq1  CCCTAGTGACCTTTCACCTATAAGGTCCTACATCCTAAAAGGTTCTATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTGACCTTTCACCTATAAGGTCCTACATCCTAAAAGGTTCTATCA  473

seq1  CTTTCCAAAATAGGGCCAGCAGCCAGGAACGAAGGGAAGCGCATTTCAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAAATAGGGCCAGCAGCCAGGAACGAAGGGAAGCGCATTTCAGA  523

seq1  CTCAACCATTACAATGTCGCTACAAACTGGCTGGCCCCTGGGGACATATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCATTACAATGTCGCTACAAACTGGCTGGCCCCTGGGGACATATG  573

seq1  AGGAGCATATCAAACAGCCTCCTACACCAAGCCACTTAGGAGCTCTCCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCATATCAAACAGCCTCCTACACCAAGCCACTTAGGAGCTCTCCAC  623

seq1  TTGACAGCCAGAGGCTACGGAGACTGGGGGAAATGAGCAGAGTTCACTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGCCAGAGGCTACGGAGACTGGGGGAAATGAGCAGAGTTCACTGG  673

seq1  AGTTTCTGGCCAGGCTGGAGCCAAGGGAGAGCCTATGTGGCAAAGAGCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGGCCAGGCTGGAGCCAAGGGAGAGCCTATGTGGCAAAGAGCCC  723

seq1  ATAAATCCCCACCAATCTGACTTTGAATTTCCTAACAGAGTGGACCCCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCCCCACCAATCTGACTTTGAATTTCCTAACAGAGTGGACCCCAG  773

seq1  GAAATTCTTTTTCCACCCCATCTTCCCGGACACTAGTCCAACAAGCACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTTTTTCCACCCCATCTTCCCGGACACTAGTCCAACAAGCACAC  823

seq1  AGGACACTGTAGCCAGAAGAAGGAAACAAATGACACACCCATACTGTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACTGTAGCCAGAAGAAGGAAACAAATGACACACCCATACTGTGAA  873

seq1  GGAGAAGCAGGGCCCCGTTCTCAGAAGAGGAGCTGGTGGGCTACAAGTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCAGGGCCCCGTTCTCAGAAGAGGAGCTGGTGGGCTACAAGTGC  923

seq1  AAGGGTCACGGCTGGCCACAGCCTGGGTCCCTCGGGGTGGCTGAAGGGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCACGGCTGGCCACAGCCTGGGTCCCTCGGGGTGGCTGAAGGGTC  973

seq1  TGGAACTGGGTCCCTGCAGGGTCTGCAACTAGGACTGTGGGAGGGAAGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGGGTCCCTGCAGGGTCTGCAACTAGGACTGTGGGAGGGAAGCC  1023

seq1  CCCTTGTGCCTTGTGTCAGCATCCTGATGACAAATCGTGTCCAGTGAAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTGCCTTGTGTCAGCATCCTGATGACAAATCGTGTCCAGTGAAAG  1073

seq1  ATGCAGAGAGCTCTGTACTGTGCAGAGGAAGTGGCCAGGGTACCAACGAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGAGCTCTGTACTGTGCAGAGGAAGTGGCCAGGGTACCAACGAG  1123

seq1  GGAGGAGCGCTCTGTGAAAGCACACGACTCTCCTGTGCACTGGAATAAAC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCGCTCTGTGAAAGCACACGACTCTCCTGTGCACTGGAATAAAC  1173

seq1  AGATGAATTC  1209
      ||||||||||
seq2  AGATGAATTC  1183

seq1: chr12_106708491_106709011
seq2: B6Ng01-126B14.g_641_1142

seq1  AACACAAAGAAGCTGTGTTCCAGAGATAGCCAAGGTTGTACCTTATGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAGAAGCTGTGTTCCAGAGATAGCCAAGGTTGTACCTTATGCTG  50

seq1  CAGCTGGACTTAGTAATATGTAAGAGTCACCCAGGTGGTACTCATTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGACTTAGTAATATGTAAGAGTCACCCAGGTGGTACTCATTTTGA  100

seq1  AGGCATGAAGGGGTCATGAAGAGCAGCTGAGGCTTGGCACTGTGAGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGAAGGGGTCATGAAGAGCAGCTGAGGCTTGGCACTGTGAGAGTC  150

seq1  CATGGAAGGCCATTGGTGAAGGTGCAGCCTCAGTTGCAGTTGACAGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGGCCATTGGTGAAGGTGCAGCCTCAGTTGCAGTTGACAGCCCA  200

seq1  GTCCTGAAGGGGCCAAAAAGGACTTGAGGCCTAGCACTGTG-AAGGGAGC  249
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTCCTGAAGGGGCCAAAAAGGACTTGAGGCCTAGCACTGTGAAAGGGAGC  250

seq1  CTGTGAGAGGCTATTGGTGAAGCCTGATTGCAGTGGAAGACTGGCTTTCA  299
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGTGAGAGGCTATTGGTGAAGCCTGATTGCAGTGG-AGACTGGCTTTCA  299

seq1  GGCAGCTAGGAGTAGGGTCTTAAAGCCCATGCCCACAGTGACACACCTAC  349
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  -GCAGCTAGGAGTAGGGTCTTAAAG-CCATGCCCACAGTGACACACCTAC  347

seq1  TTCAACAGGGCCACACCTTCAAATAGTGCCACTTCCTGGGCCAAGCATAT  399
      ||| ||| |||||||| ||| ||||||| ||||| ||||| |||||  ||
seq2  TTC-ACA-GGCCACACTTTC-AATAGTG-CACTT-CTGGG-CAAGCTAAT  391

seq1  GCAAACCATCCCAGTTACCTTCTGTGAGATGCGGCCAAAGAGGAACAC-T  448
      || |||||||||||||| ||||  || ||||||||   ||||  |||| |
seq2  GC-AACCATCCCAGTTA-CTTC--TGGGATGCGGC---AGAG--ACACTT  432

seq1  ATCCCCTCAGCCCTGTAGTTCTGGCAGCGTGTATAAAG-ATGTCAGGAAA  497
       ||||||||| ||||||| ||| |||||   ||| ||| |||||||| ||
seq2  TTCCCCTCAG-CCTGTAG-TCT-GCAGCTGTTATTAAGAATGTCAGG-AA  478

seq1  GCAGGAGGGGGGGTGCAAGATACA  521
      |  |||||||||||||||||||||
seq2  GATGGAGGGGGGGTGCAAGATACA  502