BAC Information

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BAC

Clone NameB6Ng01-126J20
Chromosome12 (Build37)
Map Location 38,502,600 - 38,604,152
singlet/doubletdoublet
Overlap geneLOC100043139
Upstream geneMeox2, A530016O06Rik
Downstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126J20.bB6Ng01-126J20.g
ACCDH928938DH928939
length1,119962
definitionDH928938|Mus musculus domesticus DNA, BAC clone: B6Ng01-126J20, 5' end.DH928939|Mus musculus domesticus DNA, BAC clone: B6Ng01-126J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,603,016 - 38,604,152)(38,502,600 - 38,503,568)
sequence
gaattctttgtttagctctctactccatttattaatggggttatttgaat
ttctgggattcagcttcttgagctctttgtatatattggatattagtccc
ctatcagatttaggattggtaaaaatcctttcccaatctgttggtggcct
ttttgtcttattgacagtatcttttgccttacagaagctttgcaatttta
tgaggccccatttgttgactcttgatcttacagcacaagccattattttt
ctgttcagaaattattcccctatgtccatatcttcgaggcttttccccac
tgtcttccatttctcctctataaatttcagtgtctctggttttttgtgga
ggtctttgatccacttagacttgaactttgtacaaggagataagactgga
tcaactcgcattcttctacatgataactgccagttgtgccagcaccattt
gttgaaaatgctgtctttttttccactggatacaaccaggaattttaagt
accaaaatatttaataaatcgtgttaccgtatatttttgtctttcaatac
tttctatctcatttttcttttttttctttttctttttcttttttttattt
tggctaagtagcacatagaaatgcaaatcactaaaattacaatgagtaaa
ttctgaagtttcatactttcaggtagtaggtacaatgttaggaagtaatt
tctacttcagagaaccatgttctgataagaaaatatgtttatatccactg
agctttgctttcatactcactccatgaaataacctcagcatctggaaggt
tcccaggtggccttccacctcatggtcttattgcacaaacctccaggggt
ctgccattgtttagtgctgtcagaactatttagcaaggggatgtttgtct
tccattttactcttgctttgaaatccaaaatgtagggaaagcaatggagt
gtgggacgatgaaaggcagtctgtttctggtttagctaggtttaaactcc
ggagaccagagatatctacagggaagaaggctatttgcatgctctagata
tggcctccgacacgaggtccagtcataattctggtgcatcagtcaattag
ctgtcagactccaccccca
gaattctatgttttatgactttcttggggaagaaagaacagaagaaagta
agagattgtttctggacaccattccaatgtccttcagagaactcagcatg
ccagagtgtctatctttggagttatcacttttggaggccaggataattaa
agtcagagttcctcactgtcacactcttctgccaacctcacattgttggc
ttagttccttggctttgtcccctatgaacacagcatgatcttgtgtttcc
aagaatcatgtccttaagttacaacacccagtgtcccccagtaaggacag
gtggtagtaaaggcagagtatattaatgtttttttgaaaagaatcgattg
ttcctggatgtgtcacgtttcttggtcctcatcttcgagatgaattccag
gagaatgttactacctccagtggagtagaatagtagaataacaagacttg
cctttggtttatcttgagagagtacgtatacacaggaccaaaagaaaaaa
aaaaaagaatctataagtaatgaagaagtggtaaatgtcagatattgtta
tctggagatggaatagggaatgtgttcaagagataagaagttaattggaa
attatcctctctgtgcttacccatggaccataagtgatatctttatagac
ttacttcatttttatgggccttctgagagagaatgtggtgggtaaggaag
cagagttctaaaggggactagatacagactggaaaaggtaaagctgtggc
tgctgtaattagatttacagaggaaggaagggcctgcaaccaggagacag
ggcaccagtgtttcttgtcagttgatattctctaataaggtagtcatcct
ttgcaaaatggacagaaggtattgccttcaactcctgaagtgaaataaag
tttcctaacatagggacaggaccatgtcttgagaagcaacctcttcaatg
taaggtaatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_38603016_38604152
seq2: B6Ng01-126J20.b_49_1167 (reverse)

seq1  TGGGGGTGGAGTCTGGACAGCTTATGTGACTGATGGCCACAGAATTATGG  50
      |||||||||||||| ||||||| || |||||||| ||  ||||||||| |
seq2  TGGGGGTGGAGTCT-GACAGCTAAT-TGACTGAT-GCACCAGAATTAT-G  46

seq1  ACCTGGGACCTCGTGTCGGGAGGCAATATCTAGGAGCATGGCAAATAGGC  100
      ||   |||||||||||| |||||| ||||||| |||||| ||||||| ||
seq2  AC--TGGACCTCGTGTC-GGAGGCCATATCTA-GAGCAT-GCAAATA-GC  90

seq1  CTTCTGTCCCTTGTAGATTAATCTCCTGTGTCTCCGGAGTTTAAACCTAG  150
      ||||| |||| |||||||  |||| ||| |||||||||||||||||||||
seq2  CTTCT-TCCC-TGTAGAT--ATCT-CTG-GTCTCCGGAGTTTAAACCTAG  134

seq1  CTAAACCAGAAAACAGACTGCCTTTCATCGTCCCACACTCCATTGCTTTC  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCAG-AAACAGACTGCCTTTCATCGTCCCACACTCCATTGCTTTC  183

seq1  CCTACATTTTGGATTTCAAAGCAAGAGTAAAATGGAAGACAAACATCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATTTTGGATTTCAAAGCAAGAGTAAAATGGAAGACAAACATCCCC  233

seq1  TTTGCTAAATAGTTCTGACAGCACTAAACAATGGCAGACCCCTGGAGGTT  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGCTAAATAGTTCTGACAGCACTAAACAATGGCAGACCCCTGGAGGTT  282

seq1  TGTGCAATAAGACCATGAGGTGGAAGGCCACCTGGGAACCTTCCAGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAATAAGACCATGAGGTGGAAGGCCACCTGGGAACCTTCCAGATGC  332

seq1  TGAGGTTATTTCATGGAGTGAGTATGAAAGCAAAGCTCAGTGGATATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTATTTCATGGAGTGAGTATGAAAGCAAAGCTCAGTGGATATAAA  382

seq1  CATATTTTCTTATCAGAACATGGTTCTCTGAAGTAGAAATTACTTCCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTCTTATCAGAACATGGTTCTCTGAAGTAGAAATTACTTCCTAA  432

seq1  CATTGTACCTACTACCTGAAAGTATGAAACTTCAGAATTTACTCATTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTACCTACTACCTGAAAGTATGAAACTTCAGAATTTACTCATTGTA  482

seq1  ATTTTAGTGATTTGCATTTCTATGTGCTACTTAGCCAAAATAAAAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTGATTTGCATTTCTATGTGCTACTTAGCCAAAATAAAAAAAAG  532

seq1  AAAAAGAAAAAGAAAAAAAAGAAAAATGAGATAGAAAGTATTGAAAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAGAAAAAAAAGAAAAATGAGATAGAAAGTATTGAAAGACA  582

seq1  AAAATATACGGTAACACGATTTATTAAATATTTTGGTACTTAAAATTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATACGGTAACACGATTTATTAAATATTTTGGTACTTAAAATTCCT  632

seq1  GGTTGTATCCAGTGGAAAAAAAGACAGCATTTTCAACAAATGGTGCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTATCCAGTGGAAAAAAAGACAGCATTTTCAACAAATGGTGCTGGC  682

seq1  ACAACTGGCAGTTATCATGTAGAAGAATGCGAGTTGATCCAGTCTTATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGGCAGTTATCATGTAGAAGAATGCGAGTTGATCCAGTCTTATCT  732

seq1  CCTTGTACAAAGTTCAAGTCTAAGTGGATCAAAGACCTCCACAAAAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACAAAGTTCAAGTCTAAGTGGATCAAAGACCTCCACAAAAAACC  782

seq1  AGAGACACTGAAATTTATAGAGGAGAAATGGAAGACAGTGGGGAAAAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAATTTATAGAGGAGAAATGGAAGACAGTGGGGAAAAGCC  832

seq1  TCGAAGATATGGACATAGGGGAATAATTTCTGAACAGAAAAATAATGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGATATGGACATAGGGGAATAATTTCTGAACAGAAAAATAATGGCT  882

seq1  TGTGCTGTAAGATCAAGAGTCAACAAATGGGGCCTCATAAAATTGCAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTAAGATCAAGAGTCAACAAATGGGGCCTCATAAAATTGCAAAG  932

seq1  CTTCTGTAAGGCAAAAGATACTGTCAATAAGACAAAAAGGCCACCAACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTAAGGCAAAAGATACTGTCAATAAGACAAAAAGGCCACCAACAG  982

seq1  ATTGGGAAAGGATTTTTACCAATCCTAAATCTGATAGGGGACTAATATCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAAAGGATTTTTACCAATCCTAAATCTGATAGGGGACTAATATCC  1032

seq1  AATATATACAAAGAGCTCAAGAAGCTGAATCCCAGAAATTCAAATAACCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATACAAAGAGCTCAAGAAGCTGAATCCCAGAAATTCAAATAACCC  1082

seq1  CATTAATAAATGGAGTAGAGAGCTAAACAAAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  CATTAATAAATGGAGTAGAGAGCTAAACAAAGAATTC  1119

seq1: chr12_38502600_38503568
seq2: B6Ng01-126J20.g_67_1028

seq1  GAATTCTATGTTTTATGACTTTCTTGGGGAAGAAAGAACAGAAGAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTTTTATGACTTTCTTGGGGAAGAAAGAACAGAAGAAAGTA  50

seq1  AGAGATTGTTTCTGGACACCATTCCAATGTCCTTCAGAGAACTCAGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGTTTCTGGACACCATTCCAATGTCCTTCAGAGAACTCAGCATG  100

seq1  CCAGAGTGTCTATCTTTGGAGTTATCACTTTTGGAGGCCAGGATAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGTCTATCTTTGGAGTTATCACTTTTGGAGGCCAGGATAATTAA  150

seq1  AGTCAGAGTTCCTCACTGTCACACTCTTCTGCCAACCTCACATTGTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGTTCCTCACTGTCACACTCTTCTGCCAACCTCACATTGTTGGC  200

seq1  TTAGTTCCTTGGCTTTGTCCCCTATGAACACAGCATGATCTTGTGTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCCTTGGCTTTGTCCCCTATGAACACAGCATGATCTTGTGTTTCC  250

seq1  AAGAATCATGTCCTTAAGTTACAACACCCAGTGTCCCCCAGTAAGGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCATGTCCTTAAGTTACAACACCCAGTGTCCCCCAGTAAGGACAG  300

seq1  GTGGTAGTAAAGGCAGAGTATATTAATGTTTTTTTGAAAAGAATCGATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGTAAAGGCAGAGTATATTAATGTTTTTTTGAAAAGAATCGATTG  350

seq1  TTCCTGGATGTGTCACGTTTCTTGGTCCTCATCTTCGAGATGAATTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGATGTGTCACGTTTCTTGGTCCTCATCTTCGAGATGAATTCCAG  400

seq1  GAGAATGTTACTACCTCCAGTGGAGTAGAATAGTAGAATAACAAGACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTTACTACCTCCAGTGGAGTAGAATAGTAGAATAACAAGACTTG  450

seq1  CCTTTGGTTTATCTTGAGAGAGTACGTATACACAGGACCAAAAGAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTTTATCTTGAGAGAGTACGTATACACAGGACCAAAAGAAAAAA  500

seq1  AAAAAAGAATCTATAAGTAATGAAGAAGTGGTAAATGTCAGATATTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAATCTATAAGTAATGAAGAAGTGGTAAATGTCAGATATTGTTA  550

seq1  TCTGGAGATGGAATAGGGAATGTGTTCAAGAGATAAGAAGTTAATTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGATGGAATAGGGAATGTGTTCAAGAGATAAGAAGTTAATTGGAA  600

seq1  ATTATCCTCTCTGTGCTTACCCATGGACCATAAGTGATATCTTTATAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTCTCTGTGCTTACCCATGGACCATAAGTGATATCTTTATAGAC  650

seq1  TTACTTCATTTTTATGGGCCTTCTGAGAGAGAATGTGGTGGGTAAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCATTTTTATGGGCCTTCTGAGAGAGAATGTGGTGGGTAAGGAAG  700

seq1  CAGAGTTCT-AAGGGGACTAGATACAGACTGGAAAAGGTAAAGCTGTGGC  749
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCTAAAGGGGACTAGATACAGACTGGAAAAGGTAAAGCTGTGGC  750

seq1  TGCTGTAATTAGATTTACAGAGGAAGGAAGGGCCTGCAACCAGGAGACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAATTAGATTTACAGAGGAAGGAAGGGCCTGCAACCAGGAGACAG  800

seq1  GGCACCAGTGTTTCTTGTCAGTTGATATTCTCTAATAAGGTAGTCAT-CT  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGCACCAGTGTTTCTTGTCAGTTGATATTCTCTAATAAGGTAGTCATCCT  850

seq1  TTGCAAAATGGACAGAAGGTATTGCCTTTCAACT-CTGAAGGTGAAATAA  897
      |||||||||||||||||||||||||| ||||||| ||||| |||||||||
seq2  TTGCAAAATGGACAGAAGGTATTGCC-TTCAACTCCTGAA-GTGAAATAA  898

seq1  AAGTTTCTTACATA-GGACAGGACACATGGTCTTTGTAGAAGGCAACCTC  946
      |  || || ||||| ||||||||| ||| |||||   |||| ||||||||
seq2  AGTTTCCTAACATAGGGACAGGAC-CAT-GTCTT--GAGAA-GCAACCTC  943

seq1  TTTCAATTGTAAAGGTAAATGCC  969
       ||||| ||| ||||| ||||||
seq2  -TTCAA-TGT-AAGGT-AATGCC  962