BAC Information

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BAC

Clone NameB6Ng01-126N19
Chromosome12 (Build37)X (Build37)
Map Location 102,302,889 - 102,304,06314,165,611 - 14,166,165
singlet/doubletsingletsinglet
Overlap geneSmek1
Upstream genePsmc1, BC002230, Calm1, Ttc7b, Rps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184
Downstream gene4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126N19.bB6Ng01-126N19.g
ACCDH929124DH929125
length1,156769
definitionDH929124|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N19, 5' end.DH929125|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(102,302,889 - 102,304,063)(14,165,611 - 14,166,165)
sequence
gaattcaggatcttcggaagagcagtctgagccatttctccagcccgaag
atggagatcttaagggggaagcaacagataatggagaagaagaaagataa
actatgtgttttcttttataggcagaatctacttgaggaaaaaggggaaa
agggaatgcgggtggggtagagaaaaggcaacaatggagatgtgaacaat
gtacaacaatgtagttatatttaaatatcatgaaacccactgttttgtat
gctgaatgaaaattaaaaaaaaaaagtgtatttttttctctatgctcata
attacctgacatattttctcccaaatttcatcgcatccagctttttcttg
aaagctaagggccaagtcataattttctgcttcagaccacacaatcagag
tatcctttgaataaaaaaaaaaaaaaaagtctgaatgactacaagtgtta
ccacaaatccttctaggtatatatagcaaatgaataaagtaacaggcaat
agaaattcagaacactgctttttacatttccaacatttctactggtaatt
atcaatgatgttttataattcactctgtcaaatctatataagtgaagcaa
tgttttaaaaataaaagtttggccaatatatgaaaaacactgtaaagaaa
atgtatgcacaaaacttacatactaaaaaccacacaatcctccccctgac
cccccaaaacccattataccaagacagacttctgtttgtttgtgcacatg
ggtacaacacctatggaggccagaagccaagtcccctggagctggggtta
cagatggctgccatgtgggttgctgggaatcaaacccaggtcctttggaa
gagcagcctgtgcttttaactgctgagccatcatcatgtattacagtctc
aattacccaatgtattacagtctcattaaaacgtccaacaatccatcttc
atgccctcagctgtcaacagctgttcttacctatggcttctttagcctct
gaaactatcgtagacggatgaataagccatgcctctatcaacactagggc
tgagtagaatgactgcctgagctggagctagaatgtctagaacgattcta
gcatgctagaattactacagcgtgaatctggctctccaaccagacatggt
taaatt
gaattcaagtactatattgcataggtagggaaaaagtgggcagccttgta
gagtccctgattttagtgggattgcttcaagtttctctccatttagtttg
atgttggctacaggtttgctgtatattgcttttattatgtttaggtatgg
gccttaaattcctgatctttccaagacttttatcatgaatgggtgttgga
ttttgtcaaaggctttctcagcatctaacgagatgatcatggatttttgt
ctttgactttgtttatatagtgcattacattgatggatttctgtatatta
aaccatccctgcatccctaggatgaagcctacttgatcatgatggatgat
cgttttgatgtgttctaggattcggtttacaagagtttgattgagtattt
tttgtatcaacgttcaaaaggaaaattgatctgaagttttgttgggtctt
tgtgtggtgtaggtatcagagtaattgtatcttcatggaatgaattgggt
acagtatctctgtttctattttgtggaatagtttgaggaatattggaatt
aggtcttctttgaaggtctgatagaactctgcactaaacccatctggtcc
tgggctttctgttgttgttgttgttgggagactagtaatgcctgttttct
atttcttaggtgatatgaaactgtttagatcagtaatctgatcctgattt
aacttagatacctggtatctgtctataaaattgtacatttcatacagttt
tctagttttgttgagtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_102302889_102304063
seq2: B6Ng01-126N19.b_47_1202

seq1  GAATTCAGGATCTTCGGAAGAGCAGTCTGAGCCATTTCTCCAGCCCGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATCTTCGGAAGAGCAGTCTGAGCCATTTCTCCAGCCCGAAG  50

seq1  ATGGAGATCTTAAGGGGGAAGCAACAGATAATGGAGAAGAAGAAAGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATCTTAAGGGGGAAGCAACAGATAATGGAGAAGAAGAAAGATAA  100

seq1  ACTATGTGTTTTCTTTTATAGGCAGAATCTACTTGAGGAAAAAGGGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTGTTTTCTTTTATAGGCAGAATCTACTTGAGGAAAAAGGGGAAA  150

seq1  AGGGAATGCGGGTGGGGTAGAGAAAAGGCAACAATGGAGATGTGAACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGCGGGTGGGGTAGAGAAAAGGCAACAATGGAGATGTGAACAAT  200

seq1  GTACAACAATGTAGTTATATTTAAATATCATGAAACCCACTGTTTTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAACAATGTAGTTATATTTAAATATCATGAAACCCACTGTTTTGTAT  250

seq1  GCTGAATGAAAATTAAAAAAAAAAAGTGTATTTTTTTCTCTATGCTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATGAAAATTAAAAAAAAAAAGTGTATTTTTTTCTCTATGCTCATA  300

seq1  ATTACCTGACATATTTTCTCCCAAATTTCATCGCATCCAGCTTTTTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTGACATATTTTCTCCCAAATTTCATCGCATCCAGCTTTTTCTTG  350

seq1  AAAGCTAAGGGCCAAGTCATAATTTTCTGCTTCAGACCACACAATCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAGGGCCAAGTCATAATTTTCTGCTTCAGACCACACAATCAGAG  400

seq1  TATCCTTTGAATAAAAAAAAAAAAAAAAGTCTGAATGACTACAAGTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTTGAATAAAAAAAAAAAAAAAAGTCTGAATGACTACAAGTGTTA  450

seq1  CCACAAATCCTTCTAGGTATATATAGCAAATGAATAAAGTAACAGGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATCCTTCTAGGTATATATAGCAAATGAATAAAGTAACAGGCAAT  500

seq1  AGAAATTCAGAACACTGCTTTTTACATTTCCAACATTTCTACTGGTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCAGAACACTGCTTTTTACATTTCCAACATTTCTACTGGTAATT  550

seq1  ATCAATGATGTTTTATAATTCACTCTGTCAAATCTATATAAGTGAAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGATGTTTTATAATTCACTCTGTCAAATCTATATAAGTGAAGCAA  600

seq1  TGTTTTAAAAATAAAAGTTTGGCCAATATATGAAAAACACTGTAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAAAATAAAAGTTTGGCCAATATATGAAAAACACTGTAAAGAAA  650

seq1  ATGTATGCACAAAACTTACATACTAAAAACCACACAATCCTCCCCCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCACAAAACTTACATACTAAAAACCACACAATCCTCCCCCTGAC  700

seq1  CCCCCAAAACCCATTATACCAAGACAGACTTCTGTTTGTTTGTGCACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAAACCCATTATACCAAGACAGACTTCTGTTTGTTTGTGCACATG  750

seq1  GGTACAACACCTATGGAGGCCAGAAGCCAAGTCCCCTGGAGCTGGGGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAACACCTATGGAGGCCAGAAGCCAAGTCCCCTGGAGCTGGGGTTA  800

seq1  CAGATGGCTGCCATGTGGGTTGCTGGGAATCAAACCCAGGTCCTTTGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGCTGCCATGTGGGTTGCTGGGAATCAAACCCAGGTCCTTTGGAA  850

seq1  GAGCAGCCTGTGCTTTTAACTGCTGAGCCATCATCATGTATTACAGTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCTGTGCTTTTAACTGCTGAGCCATCATCATGTATTACAGTCTC  900

seq1  AATTACCCAATGTATTACAGTCTCATTAAAACGTCCAACAATCCATCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCCAATGTATTACAGTCTCATTAAAACGTCCAACAATCCATCTTC  950

seq1  ATGCCCTCAGCTGTCAACAGCTGTTCTTACCTATGGCTTCTTTAGCCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTCAGCTGTCAACAGCTGTTCTTACCTATGGCTTCTTTAGCCTCT  1000

seq1  GAAACTATCGGTTAAGACGGGAATGAATAAGCCATGCCTCTAATCCAACA  1050
      ||||||||||    ||||||  ||||||||||||||||||||   |||||
seq2  GAAACTATCG---TAGACGG--ATGAATAAGCCATGCCTCTA--TCAACA  1043

seq1  CTTAGGGGGCTGAGGTAGAATGACTGCCCTGAGCTTGAAGCTAGAATGGT  1100
      ||    ||||||| |||||||||||| ||||||| || ||||||||||  
seq2  CT---AGGGCTGA-GTAGAATGACTG-CCTGAGC-TGGAGCTAGAATG--  1085

seq1  CTATAGAACGAATTCTAAGCCATGCTAGATATACTACAGCGTGAGATCT-  1149
       | ||||||| ||||||   |||||||||  ||||||||||||| |||| 
seq2  -TCTAGAACG-ATTCTA--GCATGCTAGAATTACTACAGCGTGA-ATCTG  1130

seq1  GCTCTCAAAACAAGCATGGTTAAATT  1175
      |||||| || ||  ||||||||||||
seq2  GCTCTCCAACCAGACATGGTTAAATT  1156

seq1: chrX_14165611_14166165
seq2: B6Ng01-126N19.g_281_836 (reverse)

seq1  TATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGAC  50
      |||||||||||||||| ||||| ||| | |||||| |||| ||| | |||
seq2  TATACTCAACAAAACTAGAAAA-CTGTATGAAATGTACAATTTTATAGAC  49

seq1  AGATACCAGGTACCAAAGTTGAATTAGGATCAAGTTGACCTTCTAAACAG  100
      |||||||||||| | ||||| ||| |||||||  ||     |||||||||
seq2  AGATACCAGGTATCTAAGTTAAATCAGGATCAGATTACTGATCTAAACAG  99

seq1  TCCCATATCCCCTAAAGAAATAG-AAGCAGTTATAAATAGTCTCCCAGCC  149
      |  |||||| ||| ||||||||| || |||  || | |||||||||| | 
seq2  TTTCATATCACCT-AAGAAATAGAAAACAGGCATTACTAGTCTCCCAACA  148

seq1  AAAA---------AAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTA  190
      | ||         |||||||||||||||| ||||||||||||||||||||
seq2  ACAACAACAACAGAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTA  198

seq1  TCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTTTTTCACA  240
      |||||||||||||||||| ||||||||| |  | | |||||| || ||||
seq2  TCAGACCTTCAAAGAAGACCTAATTCCAATATTCCTCAAACTATTCCACA  248

seq1  AGATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATT  290
      | ||||||  || || |||| ||||||| |||||  ||||||  || |||
seq2  AAATAGAAACAG-AGATACTGTACCCAATTCATTCCATGAAGATACAATT  297

seq1  ACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAG  340
      ||||||||||||| |||||| ||||| |||||||        ||||||||
seq2  ACTCTGATACCTACACCACACAAAGACCCAACAA--------AACTTCAG  339

seq1  ACCAATTTCTCTTATGAATATCGATGC-AAAAATCCTCAATAAAATTCTC  389
      | ||||||  ||| ||||  | ||| | |||||| |||||| ||| ||| 
seq2  ATCAATTTTCCTTTTGAACGTTGATACAAAAAATACTCAATCAAACTCTT  389

seq1  GCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGT  439
      |  |||||||||| ||||||||| ||| | |||||||||| ||| |||||
seq2  GTAAACCGAATCCTAGAACACATCAAAACGATCATCCATCATGATCAAGT  439

seq1  AGTTTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCA  489
      ||  || || | |||||||||||||||||||||||||   ||||||||||
seq2  AGGCTTCATCCTAGGGATGCAGGGATGGTTTAATATACAGAAATCCATCA  489

seq1  ATGTAATCCACTATATAAACAAACTCAAAGACAAAAACCACATGATCATC  539
      ||||||| ||||||||||||||| ||||||||||||| | ||||||||||
seq2  ATGTAATGCACTATATAAACAAAGTCAAAGACAAAAATC-CATGATCATC  538

seq1  TCGTTAGATGC--AGAAA  555
      |||||||||||  |||||
seq2  TCGTTAGATGCTGAGAAA  556