BAC Information

Click to search

BAC

Clone NameB6Ng01-127A24
Chromosome12 (Build37)
Map Location 9,353,759 - 9,472,030
singlet/doubletdoublet
Overlap geneLOC633030, LOC100042238
Upstream geneBC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32
Downstream geneOsr1, LOC382567, Nt5c1b, Rdh14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127A24.bB6Ng01-127A24.g
ACCDH929278DH929279
length1,1221,018
definitionDH929278|Mus musculus domesticus DNA, BAC clone: B6Ng01-127A24, 5' end.DH929279|Mus musculus domesticus DNA, BAC clone: B6Ng01-127A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,470,900 - 9,472,030)(9,353,759 - 9,354,753)
sequence
gaattcctattcaaattttctctttgccttatcaaattctgatacttgtt
gtttttataatgagctcatgtctcatcctctaaacagaaaataccttacc
attcctgaaaaacaaattagagaattatgaatcctacagaactctgtccc
catttcccctccactgtgatatgatctccattcctcatattgatacaaaa
ctcaattgttgattgttgtaaagcgttgaatggtagatcatccttccaaa
aatcttgcagctcttagggaagatggcctctaagacattatcattaagcc
aaactatttagatgttcaattaacatttgttctaggtacaaatgctgtca
taactaactatcccaggcacccatcccaggaggtgtaagataaactttta
ttgtattcatatactctgtgggtcaacaccttgggcagaagctgtaacag
ccccaccttaaaaggtcaagtcctaggaatttcagacatttgaaggaaag
tatggcagcccagtttagtctctagaccactccagtctggtttcacatcc
cgttgtctggtcctgtgattttaagagtcccagattctgtaacatgcggt
ttttgtttattctctttctgagttctctctcccaagcctttggtcagtgt
cttagtcagggtttctattgtggagagaccatgagcacagcaacactcat
aaaggaaaacatttcactggcactggcttacagttccagaggtttagtcc
attaccatcatggaaggaagcatggcagcgtacaggcagacatagtcttg
aagaaaggagctgagagttctacatcttcatctgaaggaaacagaagact
gtgtaacacactgggacacagctagagcatatgacaactcaagtcttttc
cccacagtgacacacttcctccaacagggccacacctcctaataatgcca
ctccctatggactatgaatccaccacatgagtctatgaggcatcactatt
caaaccaccacagtcaggttttgacaagggatgaactagaatgtgagtgt
tggctgccatctggtgcaatgcacgataggatccttcatcatgtctgaat
ctcccattgttgttacttctac
gaattcttatagttctcttaagtgagaggaaatggaaaaaaaaaaaaccc
acccacttaattctaatttgtcaaaaatataatttgcatactactgccca
aagagaaagctgcagtgagctaattttgattggagggttcaactaccctt
tgacatagcagctgccctctttccagactgggcatatcttgttgactcca
gttgttcatggagccactatcagaggcatttgttgttgattctcaaacca
gggaaatcccaggaatccagttttggtctcagtggtcatctcaccttacc
ctcaggtatctctgatattgtgatctttttcctgtagccaaccctacttg
ttcttcaaagccatcagttgcattcaatattaccaagggattattttgag
attctccttgtgtgcttttttttctaattcatgagtttgaaacaagttgg
aggtgaatggagaaaaaaatagtaatagcttccagttacagatactttgg
atatttttgaaaaatttgaactgtttatgaaagcatttagatcataaagc
atgaaatcaaagaaagttatcttgaaagtaatctaaagagtcctttacaa
aactattttagaaaagtcatgtactatcaacatttaacaatttcttcttg
gcagaagaattcccaagaaagtcagaaacaagacaaatatacggctttca
cggagggaggatgagacattatgacttaggatctaatcttataggtagag
gggctaagttcaggccctgggtcttccaaggctctggaaccacaggtcct
attatttaaactattcttggacttgcttaatttggaggccctccagtttt
tctcacctctaaatggggacagttacattattccacccttctaagggttg
atgaccgaaatggatgtgggaagcgtgtgaactctacttgggtcatggct
tccaagcgacgctttaaaaaaaataggcctctgggccgacattcctatga
agagtcccttagaggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_9470900_9472030
seq2: B6Ng01-127A24.b_45_1166 (reverse)

seq1  GTAGAGAGTAACAGACAATGGGGAAGATCCAGACATGGATGAAGGATTCT  50
      ||||| ||||||| ||||||||  |||| ||||||| |||||||||| ||
seq2  GTAGA-AGTAACA-ACAATGGG--AGATTCAGACAT-GATGAAGGATCCT  45

seq1  AATCGTGGCATTGCACCAGATGGCAGCCAAACACTCACA-TCTAGTTTCA  99
       ||||| ||||||||||||||||||||| |||||||||| ||||| ||||
seq2  -ATCGT-GCATTGCACCAGATGGCAGCC-AACACTCACATTCTAG-TTCA  91

seq1  TTCCCTGTCAAAACCTGACTGTGGTGGTTTGAATAGTGATGCCCCTCATA  149
      | || ||||||||||||||||||||||||||||||||||||  |||||||
seq2  TCCCTTGTCAAAACCTGACTGTGGTGGTTTGAATAGTGATG--CCTCATA  139

seq1  GACTCATGTGGTTGGATTCATAGTCCATAGGGAGTGGCATTATTAGGAGG  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACTCATGTGG-TGGATTCATAGTCCATAGGGAGTGGCATTATTAGGAGG  188

seq1  TGTGGCCCTGTTGGAGGAAGTGTGTCACTGTGGGG-AAAGACTTTGAGTT  248
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  TGTGGCCCTGTTGGAGGAAGTGTGTCACTGTGGGGAAAAGAC-TTGAGTT  237

seq1  GTCATATGCTCTAGCTGTGT-CCAGTGTGTTACACAGTCTTCTGTTTCCT  297
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTCATATGCTCTAGCTGTGTCCCAGTGTGTTACACAGTCTTCTGTTTCCT  287

seq1  TCAGATGAAGATGTAGAACTCTCAGCTCC-TTCTTCAAGACTATGTCTGC  346
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCAGATGAAGATGTAGAACTCTCAGCTCCTTTCTTCAAGACTATGTCTGC  337

seq1  CTGTACGCTGCCATGCTTCCTTCCATGATGGTAATGGACTAAACCTCTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACGCTGCCATGCTTCCTTCCATGATGGTAATGGACTAAACCTCTGG  387

seq1  AACTGTAAGCCAGTGCCAGTGAAATGTTTTCCTTTATGAGTGTTGCTGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAAGCCAGTGCCAGTGAAATGTTTTCCTTTATGAGTGTTGCTGTG  437

seq1  CTCATGGTCTCTCCACAATAGAAACCCTGACTAAGACACTGACCAAAGGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGTCTCTCCACAATAGAAACCCTGACTAAGACACTGACCAAAGGC  487

seq1  TTGGGAGAGAGAACTCAGAAAGAGAATAAACAAAAACCGCATGTTACAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGAGAGAACTCAGAAAGAGAATAAACAAAAACCGCATGTTACAGA  537

seq1  ATCTGGGACTCTTAAAATCACAGGACCAGACAACGGGATGTGAAACCAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGACTCTTAAAATCACAGGACCAGACAACGGGATGTGAAACCAGA  587

seq1  CTGGAGTGGTCTAGAGACTAAACTGGGCTGCCATACTTTCCTTCAAATGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTGGTCTAGAGACTAAACTGGGCTGCCATACTTTCCTTCAAATGT  637

seq1  CTGAAATTCCTAGGACTTGACCTTTTAAGGTGGGGCTGTTACAGCTTCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTCCTAGGACTTGACCTTTTAAGGTGGGGCTGTTACAGCTTCTG  687

seq1  CCCAAGGTGTTGACCCACAGAGTATATGAATACAATAAAAGTTTATCTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGTGTTGACCCACAGAGTATATGAATACAATAAAAGTTTATCTTA  737

seq1  CACCTCCTGGGATGGGTGCCTGGGATAGTTAGTTATGACAGCATTTGTAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTGGGATGGGTGCCTGGGATAGTTAGTTATGACAGCATTTGTAC  787

seq1  CTAGAACAAATGTTAATTGAACATCTAAATAGTTTGGCTTAATGATAATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACAAATGTTAATTGAACATCTAAATAGTTTGGCTTAATGATAATG  837

seq1  TCTTAGAGGCCATCTTCCCTAAGAGCTGCAAGATTTTTGGAAGGATGATC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGGCCATCTTCCCTAAGAGCTGCAAGATTTTTGGAAGGATGATC  887

seq1  TACCATTCAACGCTTTACAACAATCAACAATTGAGTTTTGTATCAATATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTCAACGCTTTACAACAATCAACAATTGAGTTTTGTATCAATATG  937

seq1  AGGAATGGAGATCATATCACAGTGGAGGGGAAATGGGGACAGAGTTCTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGAGATCATATCACAGTGGAGGGGAAATGGGGACAGAGTTCTGT  987

seq1  AGGATTCATAATTCTCTAATTTGTTTTTCAGGAATGGTAAGGTATTTTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCATAATTCTCTAATTTGTTTTTCAGGAATGGTAAGGTATTTTCT  1037

seq1  GTTTAGAGGATGAGACATGAGCTCATTATAAAAACAACAAGTATCAGAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAGGATGAGACATGAGCTCATTATAAAAACAACAAGTATCAGAAT  1087

seq1  TTGATAAGGCAAAGAGAAAATTTGAATAGGAATTC  1131
      |||||||||||||||||||||||||||||||||||
seq2  TTGATAAGGCAAAGAGAAAATTTGAATAGGAATTC  1122

seq1: chr12_9353759_9354753
seq2: B6Ng01-127A24.g_65_1082

seq1  GAATTCTTATAGTTCTCTTAAGTGAGAGGAAATGGAAAAAAAAAAAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAGTTCTCTTAAGTGAGAGGAAATGGAAAAAAAAAAAACCC  50

seq1  ACCCACTTAATTCTAATTTGTCAAAAATATAATTTGCATACTACTGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTTAATTCTAATTTGTCAAAAATATAATTTGCATACTACTGCCCA  100

seq1  AAGAGAAAGCTGCAGTGAGCTAATTTTGATTGGAGGGTTCAACTACCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGCTGCAGTGAGCTAATTTTGATTGGAGGGTTCAACTACCCTT  150

seq1  TGACATAGCAGCTGCCCTCTTTCCAGACTGGGCATATCTTGTTGACTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGCAGCTGCCCTCTTTCCAGACTGGGCATATCTTGTTGACTCCA  200

seq1  GTTGTTCATGGAGCCACTATCAGAGGCATTTGTTGTTGATTCTCAAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCATGGAGCCACTATCAGAGGCATTTGTTGTTGATTCTCAAACCA  250

seq1  GGGAAATCCCAGGAATCCAGTTTTGGTCTCAGTGGTCATCTCACCTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCCCAGGAATCCAGTTTTGGTCTCAGTGGTCATCTCACCTTACC  300

seq1  CTCAGGTATCTCTGATATTGTGATCTTTTTCCTGTAGCCAACCCTACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTATCTCTGATATTGTGATCTTTTTCCTGTAGCCAACCCTACTTG  350

seq1  TTCTTCAAAGCCATCAGTTGCATTCAATATTACCAAGGGATTATTTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAAAGCCATCAGTTGCATTCAATATTACCAAGGGATTATTTTGAG  400

seq1  ATTCTCCTTGTGTGCTTTTTTTTCTAATTCATGAGTTTGAAACAAGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTTGTGTGCTTTTTTTTCTAATTCATGAGTTTGAAACAAGTTGG  450

seq1  AGGTGAATGGAGAAAAAAATAGTAATAGCTTCCAGTTACAGATACTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAATGGAGAAAAAAATAGTAATAGCTTCCAGTTACAGATACTTTGG  500

seq1  ATATTTTTGAAAAATTTGAACTGTTTATGAAAGCATTTAGATCATAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTGAAAAATTTGAACTGTTTATGAAAGCATTTAGATCATAAAGC  550

seq1  ATGAAATCAAAGAAAGTTATCTTGAAAGTAATCTAAAGAGTCCTTTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCAAAGAAAGTTATCTTGAAAGTAATCTAAAGAGTCCTTTACAA  600

seq1  AACTATTTTAGAAAAGTCATGTACTATCAACATTTAACAATTTC-TCTTG  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACTATTTTAGAAAAGTCATGTACTATCAACATTTAACAATTTCTTCTTG  650

seq1  GCAGAAGAATTCCCAAGAAAGTCAGAAACAAGACAAATATACGGC-TTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCAGAAGAATTCCCAAGAAAGTCAGAAACAAGACAAATATACGGCTTTCA  700

seq1  CG--AGGAGGATGAGACA-TATGACTTA-GATCTAATCTTATA-GTAGA-  742
      ||   ||||||||||||| ||||||||| |||||||||||||| ||||| 
seq2  CGGAGGGAGGATGAGACATTATGACTTAGGATCTAATCTTATAGGTAGAG  750

seq1  GGGCTAAGTTCAGGCCCT-GGTCTTCCAAGGCTCTGGAA-CACA-GTCCT  789
      |||||||||||||||||| |||||||||||||||||||| |||| |||||
seq2  GGGCTAAGTTCAGGCCCTGGGTCTTCCAAGGCTCTGGAACCACAGGTCCT  800

seq1  ATTATTT-AACTA-TCTT-GACTTGC-TAATTCTGA-GCCCTCCAG-TTT  833
      ||||||| ||||| |||| ||||||| |||||  || ||||||||| |||
seq2  ATTATTTAAACTATTCTTGGACTTGCTTAATTTGGAGGCCCTCCAGTTTT  850

seq1  TCTCAACTCTAAAATGGGGACAGTTACATTA-TCCA-CCTTCTAAGGTTT  881
      ||||| |||| |||||||||||||||||||| |||| |||||||||| ||
seq2  TCTCACCTCT-AAATGGGGACAGTTACATTATTCCACCCTTCTAAGGGTT  899

seq1  GATGACTGAGATGGATGT-GGAAGC--GTGAAC-CTACTT--GTCATGGC  925
      |||||| || |||||||| ||||||  |||||| ||||||  ||||||||
seq2  GATGACCGAAATGGATGTGGGAAGCGTGTGAACTCTACTTGGGTCATGGC  949

seq1  TTCCAAAAGGCAGCTTAAAAAAAAAAAAGCCTCTGGG-CGACATACATAT  974
      ||||||  | | |||| |||||||| | ||||||||| |||||| | |||
seq2  TTCCAAGCGAC-GCTTTAAAAAAAATAGGCCTCTGGGCCGACATTCCTAT  998

seq1  GAAGAAGTCACTTAGAGGCTT  995
      |||| |||| |||||||||||
seq2  GAAG-AGTCCCTTAGAGGCTT  1018