BAC Information

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BAC

Clone NameB6Ng01-127I15
Chromosome12 (Build37)19 (Build37)
Map Location 56,857,052 - 56,857,65138,759,719 - 38,759,862
singlet/doubletsingletsinglet
Overlap geneGarnl1
Upstream geneSnx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2
Downstream geneBrms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127I15.bB6Ng01-127I15.g
ACCDH929629DH929630
length506209
definitionDH929629|Mus musculus domesticus DNA, BAC clone: B6Ng01-127I15, 5' end.DH929630|Mus musculus domesticus DNA, BAC clone: B6Ng01-127I15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,857,052 - 56,857,651)(38,759,719 - 38,759,862)
sequence
cttcactctatcttgagaatctatagactctcctacagcttgccttcaca
caaaaccttcagagcataggcctagttggtttcttctcttaacccctaat
atgttctcaatgctggcagcaggaatctgtacacataagtcagatcatat
gcttctctgttgatcgccttcatgatcagttctctgttacagtctacaag
ctttgcaccattgctctcgagagtgcttcacaccctggcccacccggtaa
ttgcaaaaacaaggatgttaaagttaagccatttaacacctcttcattct
cttaaaaagtttggatttgagatatatttttttttcatcctttttttcct
attcttttttaaaaactgtgctttctggtggggttgctctataaaaggta
aaggagcacctgttctctctctgttgatgatgggaagaattctgttcttc
atgccttggttggttggttggtttccttccttccttccttccttccttcc
atactt
atattactcatgtcatcagacttggtggcaagatctttaacccaccaaac
catactgctgaccctggaatgaatggatggatcctttctttctttctttc
tttctttctttctttctttctttctttctttctttctttctttctttctt
tctctctctctctctctctctctctctctctctctctctttctttctttc
tttcctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_56857052_56857651
seq2: B6Ng01-127I15.b_46_557 (reverse)

seq1  AAGTATAGAACGAAGTGAGTCAGAGGGAAAGCAACGGGAGATTTTGTTTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGAAGAGAAAGACAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  100
                                            ||| | ||||||
seq2  --------------------------------------AAGTATGGAAGG  12

seq1  AAGGAAGGAAGGAAGGAAGGAAACCAACCAACCAACCAAGGCATGAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAACCAACCAACCAACCAAGGCATGAAGAA  62

seq1  CAGAATTCTTCCCATCATCAACAGAGAGAGAACAGGTGCTCCTTTACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCTTCCCATCATCAACAGAGAGAGAACAGGTGCTCCTTTACCTT  112

seq1  TTATAGAGCAACCCCACCAGAAAGCACAGTTTTTAAAAAAGAATAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAGCAACCCCACCAGAAAGCACAGTTTTTAAAAAAGAATAGGAAA  162

seq1  AAAAGGATGAAAAAAAAATATATCTCAAATCCAAACTTTTTAAGAGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATGAAAAAAAAATATATCTCAAATCCAAACTTTTTAAGAGAATG  212

seq1  AAGAGGTGTTAAATGGCTTAACTTTAACATCCTTGTTTTTGCAATTACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTGTTAAATGGCTTAACTTTAACATCCTTGTTTTTGCAATTACCG  262

seq1  GGTGGGCCAGGGTGTGAAGCACTCTCGAGAGCAATGGTGCAAAGCTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCCAGGGTGTGAAGCACTCTCGAGAGCAATGGTGCAAAGCTTGTA  312

seq1  GACTGTAACAGAGAACTGATCATGAAGGCGATCAACAGAGAAGCATATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAACAGAGAACTGATCATGAAGGCGATCAACAGAGAAGCATATGA  362

seq1  TCTGACTTATGTGTACAGATTCCTGCTGCCAGCATTGAGAACATATTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTATGTGTACAGATTCCTGCTGCCAGCATTGAGAACATATTAGG  412

seq1  GGTTAAGAGAAGAAACCAACTAGGCCTATGCTCTGAAGGTTTTGTGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGAGAAGAAACCAACTAGGCCTATGCTCTGAAGGTTTTGTGTGAA  462

seq1  GGCAAGCTGTAGGAGAGTCTATAGATTCTCAAGATAGAGTGAAGGAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCTGTAGGAGAGTCTATAGATTCTCAAGATAGAGTGAAGGAATTC  512

seq1: chr19_38759719_38759862
seq2: B6Ng01-127I15.g_159_281 (reverse)

seq1  AAGAGAGAAAGAAAGAAAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGA  50
      ||||| |||||||||||||| ||||||||||||      ||| ||| |||
seq2  AAGAG-GAAAGAAAGAAAGAAAGAGAGAGAGAG------AGAGAGAGAGA  43

seq1  GAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAAAGAGA  100
      |||||||||||||||||||||||||||||||| ||| ||| ||||||| |
seq2  GAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  93

seq1  GAAAGAAAGAGAGAGAGAAAGAAAGAAAGAAAGAGAGAGAAAGA  144
      |||||||||| ||| |||||||||||||||              
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGA--------------  123