BAC Information

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BAC

Clone NameB6Ng01-128D03
Chromosome12 (Build37)
Map Location 89,350,231 - 89,514,750
singlet/doubletdoublet
Overlap geneLOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337
Upstream geneTmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350
Downstream geneLOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128D03.bB6Ng01-128D03.g
ACCDH930113DH930114
length932992
definitionDH930113|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D03, 5' end.DH930114|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,350,231 - 89,351,194)(89,513,742 - 89,514,750)
sequence
gaattcagtaggaattcagtgagaaggttatctattcagtaacatttaaa
tttacttctagtagagactgtgaaactaattaggcattacaaagaaggga
gccaaaatagctctgagctggtctgaggggtgtttacttgagacaatagc
cagtcttacccagacaagggaattcacaatggcctagtgaataggtgggt
ttaccataaaagaattagggaaccaccctgagacaggtttcttaactagg
cccaaagaaacaacataaatcaggcatttactaagaacccctggtggtgg
gcttaacaatagactagcattaaacctagctcccttcttagtggcagcgg
cctggtccccaccttcttttgatgtatacattccttatgttttgcatcac
tataacttggtggatgtatctctcctggtttcttgttattctgtataaaa
agttttgatactcaacttgacaattacattcagattctacacaacctctc
gtgttgattttctgtcatttatttcaccaactccttgtccacctgcaacc
agagacccattctacgcaggcagggaccaaaaagggtctgcagcacttcc
ccttggatatacatggtgggatcttccaagcctgctgtgtttttacatga
gatgaccaccaagaacagcagcagcagtgaaggattggctgctggagcct
agaagacaaggtgtatgctacatcgggcagagctggacaggtgacccaag
cccttggaggagcctagaagatcctgagtggattgaagtcattgggtggt
tggagaatgattttgttttgattgtgactgtgccctgacatgtttccctc
atgaagacgtattttagtggagcccacatttagagactctgagttcaaag
atttggacagtttcaagtgatgacttttattt
gaattcaagtcttcttgcttgtgcagtgagtactgcactgagtgagcaac
ctcctcctcagccctgtcagctcactgcaacttcctcacaactttgagtt
tccagggtttaaaactgagacagagagaagttaggccttctgaaggtttg
gtttgttctttgtatgttttgtaagttgctgggtaggaggggctgaaact
caggtgacttgctaagttctagaggcagatgaactagggcactcatgaaa
atctagcacaagggtatcaaacccacatcccacataattaaaggaaagca
ttgcttgcagtaagtcatttaaaaataatacatttttgggtttaagaggc
cagttaagagcaataattcctaccatccacatggtggcagacaagcatgt
gctactacagtacccagggggtccaatgccctcttttaacctccatggtc
accaagcatgcatgtggttacagatggacatacacacaaaacatctttat
atacatataataaaattataaaataagatttgttgcacgtagtgtatgag
tgtgtgggtttttgtttttgtgtgcgtttgtcaacatacctcaacacctg
tgtgaaggtcagagaacaacctgagatattctgtttcattcatgtatctg
agaatactccggtagtcaagcatggcagccagagcctttccccactgtga
cagcaaatcagctttacagatctactctgtaaattgtgttgaaagtaaaa
ttgctgatctctatataaccatagtcctatgaggacaatgagggatcatc
atgatagagctcccatatgatatgctttgtggaaatgagcttgattgtaa
gaaactcagccatctcccaccccgcacttttgttgattaattatgttttg
tttctttctgagacgggttctccgtatagctttggtttcctagactcagt
tgtatgacatgaagactcaactggaaattcggctgcctctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89350231_89351194
seq2: B6Ng01-128D03.b_141_943

seq1  AGGGAGCCAAAATAGCTCTGAGCTGGTCTGAGGGGTGTTTACTTGAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCCAAAATAGCTCTGAGCTGGTCTGAGGGGTGTTTACTTGAGACA  50

seq1  ATAGCCAGTCTTACCCAGACAAGGGAATTCACAATGGCCTAGTGAATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAGTCTTACCCAGACAAGGGAATTCACAATGGCCTAGTGAATAGG  100

seq1  TGGGTTTACCATAAAAGAATTAGGGAACCACCCTGAGACAGGTTTCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTACCATAAAAGAATTAGGGAACCACCCTGAGACAGGTTTCTTAA  150

seq1  CTAGGCCCAAAGAAACAACATAAATCAGGCATTTACTAAGAACCCCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCCAAAGAAACAACATAAATCAGGCATTTACTAAGAACCCCTGGT  200

seq1  GGTGGGCTTAACAATAGACTAGCATTAAACCTAGCTCCCTTCTTAGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCTTAACAATAGACTAGCATTAAACCTAGCTCCCTTCTTAGTGGC  250

seq1  AGCGGCCTGGTCCCCACCTTCTTTTGATGTATACATTCCTTATGTTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCCTGGTCCCCACCTTCTTTTGATGTATACATTCCTTATGTTTTGC  300

seq1  ATCACTATAACTTGGTGGATGTATCTCTCCTGGTTTCTTGTTATTCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTATAACTTGGTGGATGTATCTCTCCTGGTTTCTTGTTATTCTGTA  350

seq1  TAAAAAGTTTTGATACTCAACTTGACAATTACATTCAGATTCTACACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTTTTGATACTCAACTTGACAATTACATTCAGATTCTACACAAC  400

seq1  CTCTCGTGTTGATTTTCTGTCATTTATTTCACCAACTCCTTGTCCACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGTGTTGATTTTCTGTCATTTATTTCACCAACTCCTTGTCCACCTG  450

seq1  CAACCAGAGACCCATTCTACGCAGGCAGGGACCAAAAAGGGTCTGCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGAGACCCATTCTACGCAGGCAGGGACCAAAAAGGGTCTGCAGCA  500

seq1  CTTCCCCTTGGATATACATGGTGGGATCTTCCAAGCCTGCTGTGTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTTGGATATACATGGTGGGATCTTCCAAGCCTGCTGTGTTTTTA  550

seq1  CATGAGATGACCACCAAGAACAGCAGCAGCAGTGAAGGATTGGCTGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGATGACCACCAAGAACAGCAGCAGCAGTGAAGGATTGGCTGCTGG  600

seq1  AGCCTAGAAGACAAGGTGTATGCTACATCGGGCAGAGCTGGACAGGTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGAAGACAAGGTGTATGCTACATCGGGCAGAGCTGGACAGGTGAC  650

seq1  CCAAGCCCTTGGAGGAGCCTAGAAGATCCTGAGTGGATTGAAGTCATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCCTTGGAGGAGCCTAGAAGATCCTGAGTGGATTGAAGTCATTGG  700

seq1  GTGGTTGGAGAATGATTTTGTTTTGATTGTGACTGTGCCCTGGCATGTTT  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTGGTTGGAGAATGATTTTGTTTTGATTGTGACTGTGCCCTGACATGTTT  750

seq1  CCCTCGTGAAGAAGGCATTTTAGTGGAGCCCACAGTTAAGAGACTCTGAA  800
      ||||| ||||| | | |||||||||||||||||| || ||||||||||| 
seq2  CCCTCATGAAG-ACGTATTTTAGTGGAGCCCACA-TTTAGAGACTCTGAG  798

seq1  TTTTAAAAGATATTGGACATTTTCAAGTGATTGAACTTTTTTTTTAACAG  850
      ||  |                                             
seq2  TTCAA---------------------------------------------  803

seq1  CAGCAAAGTTTTTATTAATGTGAGCTGTTAAAAATCACCATCTGTACGGC  900
                                                        
seq2  --------------------------------------------------  803

seq1  ATGGTGGCACATGCCTTTAATCCCAGCATTGGGGAGGCAGAGGCAGGCAG  950
                                                        
seq2  --------------------------------------------------  803

seq1  ATTTCTGAGTTCAA  964
                    
seq2  --------------  803

seq1: chr12_89513742_89514750
seq2: B6Ng01-128D03.g_68_1059 (reverse)

seq1  GCAGAGGCAGGCAGATTTCTGAGTTTGAGTCCAGCCTGGTCTACAAAGTG  50
      |||||||||| |  |||||  || |||||| |  | ||   ||| || ||
seq2  GCAGAGGCAGCCGAATTTC-CAG-TTGAGT-CTTCATGTCATAC-AACTG  46

seq1  AGTTCTAGGACAACCAAAGCTATACAGAGAAACCCTGTCTCAAAAAAAAA  100
      || ||||||| |||||||||||||| |||||  || |||||| ||| |||
seq2  AG-TCTAGGA-AACCAAAGCTATACGGAGAA--CCCGTCTCAGAAAGAAA  92

seq1  AAAAACAAAATAAAACAAAAAAAAGTGTGGGGGTGGGGAGATGGCTATGT  150
       |||||| ||| || ||| ||||   ||| |||  |||||||||||  | 
seq2  CAAAACATAATTAATCAACAAAA---GTGCGGGGTGGGAGATGGCTGAG-  138

seq1  TTTCTTACAGTCAAGGCTCATTTTCCACAAAGGCATATCATATGGGATGC  200
      ||||||||| |||| ||||| |||||||||| ||||||||||||||| ||
seq2  TTTCTTACAATCAA-GCTCA-TTTCCACAAA-GCATATCATATGGGA-GC  184

seq1  TTGTATCATGATGATCCCTCATTGTCCTCATAGGACTATGGTTATATAGA  250
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCTATCATGATGATCCCTCATTGTCCTCATAGGACTATGGTTATATAGA  233

seq1  GATCAGCAATTTTACTTACAACACAATTAACAGAGTAGATCTGTAAAGCT  300
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  GATCAGCAATTTTACTTTCAACACAATTTACAGAGTAGATCTGTAAAGCT  283

seq1  GATTTGCTGTCACAGTGGGGAAAGGCTCTGGCTGCCATGCTTGACTACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCTGTCACAGTGGGGAAAGGCTCTGGCTGCCATGCTTGACTACCG  333

seq1  GAGTATTCTCAGATACATGAATGAAACAGAATATCTCAGGTTGTTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTCTCAGATACATGAATGAAACAGAATATCTCAGGTTGTTCTCTG  383

seq1  ACCTTCACACAGGTGTTGAGGTATGTTGACAAACGCACACAAAAACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCACACAGGTGTTGAGGTATGTTGACAAACGCACACAAAAACAAAA  433

seq1  ACCCACACACTCATACACTACGTGCAACAAATCTTATTTTATAATTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACACTCATACACTACGTGCAACAAATCTTATTTTATAATTTTAT  483

seq1  TATATGTATATAAAGATGTTTTGTGTGTATGTCCATCTGTAACCACATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATATAAAGATGTTTTGTGTGTATGTCCATCTGTAACCACATGC  533

seq1  ATGCTTGGTGACCATGGAGGTTAAAAGAGGGCATTGGACCCCCTGGGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGGTGACCATGGAGGTTAAAAGAGGGCATTGGACCCCCTGGGTAC  583

seq1  TGTAGTAGCACATGCTTGTCTGCCACCATGTGGATGGTAGGAATTATTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAGCACATGCTTGTCTGCCACCATGTGGATGGTAGGAATTATTGC  633

seq1  TCTTAACTGGCCTCTTAAACCCAAAAATGTATTATTTTTAAATGACTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTGGCCTCTTAAACCCAAAAATGTATTATTTTTAAATGACTTAC  683

seq1  TGCAAGCAATGCTTTCCTTTAATTATGTGGGATGTGGGTTTGATACCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCAATGCTTTCCTTTAATTATGTGGGATGTGGGTTTGATACCCTT  733

seq1  GTGCTAGATTTTCATGAGTGCCCTAGTTCATCTGCCTCTAGAACTTAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGATTTTCATGAGTGCCCTAGTTCATCTGCCTCTAGAACTTAGCA  783

seq1  AGTCACCTGAGTTTCAGCCCCTCCTACCCAGCAACTTACAAAACATACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCTGAGTTTCAGCCCCTCCTACCCAGCAACTTACAAAACATACAA  833

seq1  AGAACAAACCAAACCTTCAGAAGGCCTAACTTCTCTCTGTCTCAGTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAACCAAACCTTCAGAAGGCCTAACTTCTCTCTGTCTCAGTTTTA  883

seq1  AACCCTGGAAACTCAAAGTTGTGAGGAAGTTGCAGTGAGCTGACAGGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGAAACTCAAAGTTGTGAGGAAGTTGCAGTGAGCTGACAGGGCT  933

seq1  GAGGAGGAGGTTGCTCACTCAGTGCAGTACTCACTGCACAAGCAAGAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAGGTTGCTCACTCAGTGCAGTACTCACTGCACAAGCAAGAAGA  983

seq1  CTTGAATTC  1009
      |||||||||
seq2  CTTGAATTC  992