BAC Information

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BAC

Clone NameB6Ng01-128J17
Chromosome12 (Build37)
Map Location 46,564,720 - 46,622,380
singlet/doubletdoublet
Overlap genenone
Upstream geneNrcam, EG620025, Stxbp6
Downstream geneLOC664952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128J17.bB6Ng01-128J17.g
ACCDH930413DH930414
length1,1631,117
definitionDH930413|Mus musculus domesticus DNA, BAC clone: B6Ng01-128J17, 5' end.DH930414|Mus musculus domesticus DNA, BAC clone: B6Ng01-128J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,621,199 - 46,622,380)(46,564,720 - 46,565,844)
sequence
gaattcccttttaaaaaggggcaaaatgaaattcaaaaagctgctatgcc
ttactctaaagttcattatcaatcatagtagagtttgaattagaattctt
ctctcctagaaatctataaccattcctctaagttactctttttctttgga
ggcacaaatatcatgtatgtattatacatgtagtttgtgtggcaaatgaa
agtcattgcttccaagaaggaagtaaaattatgtagaataagaagtctta
aattaaacaatgagatagacaaggaataattatatcaacactttcctgtg
gcttctccatccacaatgagaagttagaggtctttcttttaattgacaat
taaagcttttacaaaattctccaaagcaagccaacttttagctttttatc
aagaataaacaaatgatgatacatgtatacaatgttctgtattgtatcat
ttacaataaaataatatataatttctcaacaacttgtgcataaatattta
aggattttcattaatactttataaaactatcattattgctggccaaaaga
atgataaagggaagaaggaaaggaagaggtaaatatttaaccaagacaag
aggcattggaagtccatataggctaattttcagggtactttttaaaaaaa
tttcctcagtcttgctgattattaataattctataatttacctagatatt
ttctttttgcttactaatatccttaccattaatgcacataaatacatttc
aaaatacaaatgagaggtaatataaatggttgaacctattgttataagat
aaaagtttccttttactagataaatgacaatgtaaagctaaactgttact
gaaagcaaatgttgaagcaaattgagaaacatttgatttttaccaacatg
ttctcataaagtagcttcattcctgtggtaccaaatgatgcatgttgatg
taattatcttctctaacagatctgagtgtagtatagtgaaaatgcagcag
aaaagtgcattctgatcatgagagggcagactggtatgacatgcagtcag
tcatggctgttccacatagtagcgatttctgctcaaagtcatgtgcacag
tgattcctcaggaagaggtgataatcttctcattgaagatatgattgaca
aatataactacat
gaattctacatttcacattatttagtctagtcataatggaattctcatga
atctctgattcaggagcacgttctttcaaaggatttaagttccttcagac
acatttcatgatcttctctgtgagctccagagaacctccctatctacgtg
ggttttgttcattaacaatgtgaaatgcgatggctgtttcttcttgcagc
gttctgtagttagtactggctgtggcagtctgctgtcgaacccgaataac
acagaaccattactttttttttaaagcatttcttagtatatatttctttg
gggtaatggtatcacttaaagttgtaggcttattttcaaaatacatttcc
ttgatggcatggtctcactcttgctcatttgagaaccacccatggtatcc
tcaccacccaggctagatatgcgttcatagacagttgctgaacatttatt
agttacttcgaaatcaccgtggtatagtgtaaaagtacagcaatagtact
tgttgttttctacttctagtattttctaaatctgttcttgtgttgactct
ttctgtatgctgataggtttgcatgaatttctatgggtgtatttattctc
acagactgctggcactatttttatagatagacttgggctcagtaccttga
tataatgaaaagtaaaaataaaaggaaattcggaagaacatatacgtggg
ggaaggaaacaacaatatgccagatctttatgaaaaagagcagcctgttt
gtgaagctcagcacatgtaggcttgcttcttactttgtagtatttgcaag
gagtcaaggagtattcttgatatacctgacgatctctacctattcaaata
ggactaagagacttaaggagacaggccttggcctaatagggtaaaatctg
cagtgtcgtataagtcaaactagaaatcaaggcaatctgctgtgttggtg
agacacaaattctggagagaccttagaaacatagatgtagccatcagaaa
tgtagagtagtggattggtgtcaatttatcatgtaaggacattctcaatg
ttgcacacctttgcgaggatgtacgagtccttgctttttaagttggagaa
caaaaccttgcatagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_46621199_46622380
seq2: B6Ng01-128J17.b_44_1206 (reverse)

seq1  ATGTAGTTTATATAATTGTCAATCATTATCTTCAATGAGAAGATATATCA  50
      |||||||   |||| |||||||||| |||||||||||||||||| |||||
seq2  ATGTAGT---TATATTTGTCAATCA-TATCTTCAATGAGAAGAT-TATCA  45

seq1  CCTCTTCCTGAGAAATCACTGGTGCACATGACTTTTTGAAGCAGGAAATC  100
      |||||||||||| ||||||| ||||||||||||||    |||| ||||||
seq2  CCTCTTCCTGAGGAATCACT-GTGCACATGACTTT---GAGCA-GAAATC  90

seq1  GGCTTACTATGTGGGAACAGCCATTGGACTGACTGCATGTCATACCAAGT  150
      |   |||||||| |||||||||||  |||||||||||||||||||| |||
seq2  G--CTACTATGT-GGAACAGCCAT--GACTGACTGCATGTCATACC-AGT  134

seq1  CTGGCCCTCTTCAATGATCAGAATGCACTTTTTCTGCTGCATTTTCACTA  200
      || |||||||   ||||||||||||||| |||||||||||||||||||||
seq2  CT-GCCCTCT--CATGATCAGAATGCAC-TTTTCTGCTGCATTTTCACTA  180

seq1  TACTACACTCAGATCTGTTAGAGAAGATAATTACATCAACATGCATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACACTCAGATCTGTTAGAGAAGATAATTACATCAACATGCATCATT  230

seq1  TGGTACCACAGGAATGAAGCTACTTTATGAGAACATGTTGGTAAAAATC-  299
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGTACCACAGGAATGAAGCTACTTTATGAGAACATGTTGGTAAAAATCA  280

seq1  AATGTTTCTCAATTTGCTTCAACATTTGCTTTCAGTAACAGTTTAGCTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCTCAATTTGCTTCAACATTTGCTTTCAGTAACAGTTTAGCTTT  330

seq1  ACATTGTCATTTATCTAGTAAAAGGAAACTTTTATCTTATAACAATAGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTCATTTATCTAGTAAAAGGAAACTTTTATCTTATAACAATAGGT  380

seq1  TCAACCATTTATATTACCTCTCATTTGTATTTTGAAATGTATTTATGTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCATTTATATTACCTCTCATTTGTATTTTGAAATGTATTTATGTGC  430

seq1  ATTAATGGTAAGGATATTAGTAAGCAAAAAGAAAATATCTAGGTAAATTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGGTAAGGATATTAGTAAGCAAAAAGAAAATATCTAGGTAAATTA  480

seq1  TAGAATTATTAATAATCAGCAAGACTGAGGAAATTTTTTTAAAAAGTACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTATTAATAATCAGCAAGACTGAGGAAATTTTTTTAAAAAGTACC  530

seq1  CTGAAAATTAGCCTATATGGACTTCCAATGCCTCTTGTCTTGGTTAAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATTAGCCTATATGGACTTCCAATGCCTCTTGTCTTGGTTAAATA  580

seq1  TTTACCTCTTCCTTTCCTTCTTCCCTTTATCATTCTTTTGGCCAGCAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTCTTCCTTTCCTTCTTCCCTTTATCATTCTTTTGGCCAGCAATA  630

seq1  ATGATAGTTTTATAAAGTATTAATGAAAATCCTTAAATATTTATGCACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGTTTTATAAAGTATTAATGAAAATCCTTAAATATTTATGCACAA  680

seq1  GTTGTTGAGAAATTATATATTATTTTATTGTAAATGATACAATACAGAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGAGAAATTATATATTATTTTATTGTAAATGATACAATACAGAAC  730

seq1  ATTGTATACATGTATCATCATTTGTTTATTCTTGATAAAAAGCTAAAAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATACATGTATCATCATTTGTTTATTCTTGATAAAAAGCTAAAAGT  780

seq1  TGGCTTGCTTTGGAGAATTTTGTAAAAGCTTTAATTGTCAATTAAAAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCTTTGGAGAATTTTGTAAAAGCTTTAATTGTCAATTAAAAGAA  830

seq1  AGACCTCTAACTTCTCATTGTGGATGGAGAAGCCACAGGAAAGTGTTGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCTAACTTCTCATTGTGGATGGAGAAGCCACAGGAAAGTGTTGAT  880

seq1  ATAATTATTCCTTGTCTATCTCATTGTTTAATTTAAGACTTCTTATTCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATTCCTTGTCTATCTCATTGTTTAATTTAAGACTTCTTATTCTA  930

seq1  CATAATTTTACTTCCTTCTTGGAAGCAATGACTTTCATTTGCCACACAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTACTTCCTTCTTGGAAGCAATGACTTTCATTTGCCACACAAA  980

seq1  CTACATGTATAATACATACATGATATTTGTGCCTCCAAAGAAAAAGAGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGTATAATACATACATGATATTTGTGCCTCCAAAGAAAAAGAGTA  1030

seq1  ACTTAGAGGAATGGTTATAGATTTCTAGGAGAGAAGAATTCTAATTCAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAGGAATGGTTATAGATTTCTAGGAGAGAAGAATTCTAATTCAAA  1080

seq1  CTCTACTATGATTGATAATGAACTTTAGAGTAAGGCATAGCAGCTTTTTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTATGATTGATAATGAACTTTAGAGTAAGGCATAGCAGCTTTTTG  1130

seq1  AATTTCATTTTGCCCCTTTTTAAAAGGGAATTC  1182
      |||||||||||||||||||||||||||||||||
seq2  AATTTCATTTTGCCCCTTTTTAAAAGGGAATTC  1163

seq1: chr12_46564720_46565844
seq2: B6Ng01-128J17.g_68_1184

seq1  GAATTCTACATTTCACATTATTTAGTCTAGTCATAATGGAATTCTCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATTTCACATTATTTAGTCTAGTCATAATGGAATTCTCATGA  50

seq1  ATCTCTGATTCAGGAGCACGTTCTTTCAAAGGATTTAAGTTCCTTCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGATTCAGGAGCACGTTCTTTCAAAGGATTTAAGTTCCTTCAGAC  100

seq1  ACATTTCATGATCTTCTCTGTGAGCTCCAGAGAACCTCCCTATCTACGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCATGATCTTCTCTGTGAGCTCCAGAGAACCTCCCTATCTACGTG  150

seq1  GGTTTTGTTCATTAACAATGTGAAATGCGATGGCTGTTTCTTCTTGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTTCATTAACAATGTGAAATGCGATGGCTGTTTCTTCTTGCAGC  200

seq1  GTTCTGTAGTTAGTACTGGCTGTGGCAGTCTGCTGTCGAACCCGAATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTAGTTAGTACTGGCTGTGGCAGTCTGCTGTCGAACCCGAATAAC  250

seq1  ACAGAACCATTACTTTTTTTTTAAAGCATTTCTTAGTATATATTTCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACCATTACTTTTTTTTTAAAGCATTTCTTAGTATATATTTCTTTG  300

seq1  GGGTAATGGTATCACTTAAAGTTGTAGGCTTATTTTCAAAATACATTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATGGTATCACTTAAAGTTGTAGGCTTATTTTCAAAATACATTTCC  350

seq1  TTGATGGCATGGTCTCACTCTTGCTCATTTGAGAACCACCCATGGTATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGCATGGTCTCACTCTTGCTCATTTGAGAACCACCCATGGTATCC  400

seq1  TCACCACCCAGGCTAGATATGCGTTCATAGACAGTTGCTGAACATTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACCCAGGCTAGATATGCGTTCATAGACAGTTGCTGAACATTTATT  450

seq1  AGTTACTTCGAAATCACCGTGGTATAGTGTAAAAGTACAGCAATAGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTCGAAATCACCGTGGTATAGTGTAAAAGTACAGCAATAGTACT  500

seq1  TGTTGTTTTCTACTTCTAGTATTTTCTAAATCTGTTCTTGTGTTGACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTCTACTTCTAGTATTTTCTAAATCTGTTCTTGTGTTGACTCT  550

seq1  TTCTGTATGCTGATAGGTTTGCATGAATTTCTATGGGTGTATTTATTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATGCTGATAGGTTTGCATGAATTTCTATGGGTGTATTTATTCTC  600

seq1  ACAGACTGCTGGCACTATTTTTATAGATAGACTTGGGCTCAGTACCTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGCTGGCACTATTTTTATAGATAGACTTGGGCTCAGTACCTTGA  650

seq1  TATAATGAAAAGTAAAAATAAAAGGAAATTCGGAAGAACATATACGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGAAAAGTAAAAATAAAAGGAAATTCGGAAGAACATATACGTGGG  700

seq1  GGAAGGAAACAACAATATGCCAGATCTTTATGAAAAAGAGCAGCCTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAACAACAATATGCCAGATCTTTATGAAAAAGAGCAGCCTGTTT  750

seq1  GTGAAGCTCAGCACATGTAGGCTTGCTTCTTACTTTGTAGTATTTGCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCTCAGCACATGTAGGCTTGCTTCTTACTTTGTAGTATTTGCAAG  800

seq1  GAGTCAAGGAGTATTCTTGATATACCTGACGATCTCTACCTATTCAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGTCAAGGAGTATTCTTGATATACCTGACGATCTCTACCTATTC-AAAT  849

seq1  AGGACTAAGAGACTT-AGGAGACAGGCCTTGGCCTAATAGGGTAAAATCT  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGACTAAGAGACTTAAGGAGACAGGCCTTGGCCTAATAGGGTAAAATCT  899

seq1  GCAGGTGTCGTATAAGTCAAACTAGAAAATCAAGGCAATCTGCTGTGTTG  949
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCA-GTGTCGTATAAGTCAAACTAG-AAATCAAGGCAATCTGCTGTGTTG  947

seq1  GTGAAGACACAAATTCTGGAGAGAACCTTTAGAAACATAGATGTAGCCAT  999
      ||| ||||||||||||||||||||  | ||||||||||||||||||||||
seq2  GTG-AGACACAAATTCTGGAGAGA--CCTTAGAAACATAGATGTAGCCAT  994

seq1  CAGAAATGGTAAGAGTAGGTGATTGGTGGTTCAATTTATCATGTAGGGAC  1049
      ||||||||   |||||||  ||||||||  ||||||||||||||| ||||
seq2  CAGAAATG--TAGAGTAGTGGATTGGTG--TCAATTTATCATGTAAGGAC  1040

seq1  A-TCTCAATG-TGCACA-CTTTGCAGAGGATGTACGAGCCCTTGCTTTTT  1096
      | |||||||| |||||| |||||| ||||||||||||| |||||||||||
seq2  ATTCTCAATGTTGCACACCTTTGC-GAGGATGTACGAGTCCTTGCTTTTT  1089

seq1  AAGTTGGAGAAACAAATACTTGCATAGAA  1125
      ||||||||| ||||||  |||||||||||
seq2  AAGTTGGAG-AACAAAACCTTGCATAGAA  1117