BAC Information

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BAC

Clone NameB6Ng01-128J23
Chromosome12 (Build37)
Map Location 101,234,539 - 101,423,049
singlet/doubletdoublet
Overlap geneKcnk13, Psmc1, BC002230
Upstream geneEG667779, Ches1, LOC100039892, 2610021K21Rik, Tdp1, LOC100040041
Downstream geneCalm1, Ttc7b, Rps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128J23.bB6Ng01-128J23.g
ACCDH930425DH930426
length1,133814
definitionDH930425|Mus musculus domesticus DNA, BAC clone: B6Ng01-128J23, 5' end.DH930426|Mus musculus domesticus DNA, BAC clone: B6Ng01-128J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,421,919 - 101,423,049)(101,234,539 - 101,235,344)
sequence
gaattcttctgagtggctgggattatgggtatgggctttatgcccgactc
ttgtagtcatttcagaatcctgctttcatagattggcctactacacctct
catgctggtgggctttgctgctggagtcacaattcatgcaggcagcattt
agagttcggtaaaaggcaaagcgcattttctgtcctagttcgtggagcct
ctgaattttctccatggagtccaggttaaggacaattcactctccgcttc
tccattgccgttctggctccacttttgtccccttctgttttctgacctct
ccagccttcagttcaacaagccaccactgctttctgtattacacgcctgt
ctggttttgctgtaatcttgcttagtctacagcagattgtcatgggttta
gtgcttttttaggaagggcagacgtttatttctcacggttctgtggctga
gaagtgcatcatcaaggcaacatcagactggagtctggcggaggctcctc
ccgctaatacagtgcctttctgtttcatcctcatagggtgtgaggtcaaa
ggccagagggacaccgatgctctgcttcatgtggcagaggagatgaaagg
cccaggcagctctgacgcctcttttataaggaagttgaacccactcacca
gggcacagccctcatgactaatcacttcccttttttatggtataagttcc
agcataactttggaagggacacacagtcacgttttggcacattcccatcc
ctggttctatctcatgcccttggtttaatctgtagcccagataatcaacc
acatctacctggatcattgccctgcccaaacagggcaggctcatgaattc
aaatgtgagatcagctcacatcaacactcccctgaccccacccactggct
cccttaacacttatttcacgtctcctgttcccacattctacgtctattat
gggtagcccattactcattcattcagtgaatatttgtgatacacctattc
aggagtgtggctctggactggagaccaaggcatgagagcataacgtgcct
ggaccttgggttttaacggactcttatctagtttggaagaaaactaaacg
gaagtggcacattttttgcaagtgggggagaca
gaattctagaaatgccatacaaagttgacacctctgtgatgttctgccag
cccacatgtcctcaagggatggctaggttaggctcaaggaaagttccacc
ccacccaatacctaggtgtggaagggaggtgggggagcccccaggaagtc
cctccttggtgagatgccattgtcttgaatttggggatgactgcttctgc
tctgggatgctgtctacaagtctgggggcagcactgggccttcccacata
cccagaatgcccggcactaccatttccccactcgcagtattgtctcctaa
tcccaccagttgcttctcccttctgcctctttgaacttcttctctgagct
ctttcggaaatggcaccacccttcacatgaagacgtgagaaatcctcttt
cctctacacgtagcagcccagccttgtctgactgtccttcttggtaggga
gggtcaccctttcatgtgcaggataagacaagtgacagagcagccaacat
gtaaacagccaaagtgcataactatagttgatggagacactgtgttttgt
gtcatcagtgcccacccaccctgtaccagagtcgtcattattgaggatat
cagtgtttattgacaggttagagacccaggccctggctttgttacgggac
aaaaatccacacattctagagtcaggaaattattagttttcttgccattt
cctttaaggcccttgaatccaactctgaacagacaagggacaagcagtaa
tttgtgtctacagagagctggggaacaaaggctctgtttatttttgtaat
tttctgtatctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_101421919_101423049
seq2: B6Ng01-128J23.b_50_1182 (reverse)

seq1  TGTCTCCCAC-CTTGCAAAAAATGTGCCACTTCCGTTTAGTTTTCTTCC-  48
      |||||||| | |||||||||||||||||||||||||||||||||||||| 
seq2  TGTCTCCCCCACTTGCAAAAAATGTGCCACTTCCGTTTAGTTTTCTTCCA  50

seq1  AACTAG-TAAGAGTCCGTTAAAAACCAAGGTCCAGGCACGTTATGCTTCT  97
      |||||| |||||||||||||||| |||||||||||||||||||||| |||
seq2  AACTAGATAAGAGTCCGTTAAAACCCAAGGTCCAGGCACGTTATGC-TCT  99

seq1  CATGCCCTTGGTCTCCAGTCCAGAGCCACACTCCTG-ATAGGTGTATCAC  146
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATG-CCTTGGTCTCCAGTCCAGAGCCACACTCCTGAATAGGTGTATCAC  148

seq1  AAATATTCACTGAATGAATGAGTAATTGGCTACCCATAATAGACGTAGAA  196
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAATATTCACTGAATGAATGAGTAATGGGCTACCCATAATAGACGTAGAA  198

seq1  TGTGGGAACAGGAGACGTGAAATAAGTGTTAAGGGAGCCAGTGGGTGGGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAACAGGAGACGTGAAATAAGTGTTAAGGGAGCCAGTGGGTGGGG  248

seq1  TCAGGGGAGTGTTGATGTGAGCTGATCTCACATTTGAATTCATGAGCCTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGAGTGTTGATGTGAGCTGATCTCACATTTGAATTCATGAGCCTG  298

seq1  CCCTGTTTGGGCAGGGCAATGATCCAGGTAGATGTGGTTGATTATCTGGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTGGGCAGGGCAATGATCCAGGTAGATGTGGTTGATTATCTGGG  348

seq1  CTACAGATTAAACCAAGGGCATGAGATAGAACCAGGGATGGGAATGTGCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATTAAACCAAGGGCATGAGATAGAACCAGGGATGGGAATGTGCC  398

seq1  AAAACGTGACTGTGTGTCCCTTCCAAAGTTATGCTGGAACTTATACCATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTGACTGTGTGTCCCTTCCAAAGTTATGCTGGAACTTATACCATA  448

seq1  AAAAAGGGAAGTGATTAGTCATGAGGGCTGTGCCCTGGTGAGTGGGTTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGAAGTGATTAGTCATGAGGGCTGTGCCCTGGTGAGTGGGTTCA  498

seq1  ACTTCCTTATAAAAGAGGCGTCAGAGCTGCCTGGGCCTTTCATCTCCTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTATAAAAGAGGCGTCAGAGCTGCCTGGGCCTTTCATCTCCTCT  548

seq1  GCCACATGAAGCAGAGCATCGGTGTCCCTCTGGCCTTTGACCTCACACCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATGAAGCAGAGCATCGGTGTCCCTCTGGCCTTTGACCTCACACCC  598

seq1  TATGAGGATGAAACAGAAAGGCACTGTATTAGCGGGAGGAGCCTCCGCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGATGAAACAGAAAGGCACTGTATTAGCGGGAGGAGCCTCCGCCA  648

seq1  GACTCCAGTCTGATGTTGCCTTGATGATGCACTTCTCAGCCACAGAACCG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGTCTGATGTTGCCTTGATGATGCACTTCTCAGCCACAGAACCG  698

seq1  TGAGAAATAAACGTCTGCCCTTCCTAAAAAAGCACTAAACCCATGACAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATAAACGTCTGCCCTTCCTAAAAAAGCACTAAACCCATGACAAT  748

seq1  CTGCTGTAGACTAAGCAAGATTACAGCAAAACCAGACAGGCGTGTAATAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTAGACTAAGCAAGATTACAGCAAAACCAGACAGGCGTGTAATAC  798

seq1  AGAAAGCAGTGGTGGCTTGTTGAACTGAAGGCTGGAGAGGTCAGAAAACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGTGGTGGCTTGTTGAACTGAAGGCTGGAGAGGTCAGAAAACA  848

seq1  GAAGGGGACAAAAGTGGAGCCAGAACGGCAATGGAGAAGCGGAGAGTGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGACAAAAGTGGAGCCAGAACGGCAATGGAGAAGCGGAGAGTGAA  898

seq1  TTGTCCTTAACCTGGACTCCATGGAGAAAATTCAGAGGCTCCACGAACTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTAACCTGGACTCCATGGAGAAAATTCAGAGGCTCCACGAACTA  948

seq1  GGACAGAAAATGCGCTTTGCCTTTTACCGAACTCTAAATGCTGCCTGCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAAAATGCGCTTTGCCTTTTACCGAACTCTAAATGCTGCCTGCAT  998

seq1  GAATTGTGACTCCAGCAGCAAAGCCCACCAGCATGAGAGGTGTAGTAGGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTGACTCCAGCAGCAAAGCCCACCAGCATGAGAGGTGTAGTAGGC  1048

seq1  CAATCTATGAAAGCAGGATTCTGAAATGACTACAAGAGTCGGGCATAAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTATGAAAGCAGGATTCTGAAATGACTACAAGAGTCGGGCATAAAG  1098

seq1  CCCATACCCATAATCCCAGCCACTCAGAAGAATTC  1131
      |||||||||||||||||||||||||||||||||||
seq2  CCCATACCCATAATCCCAGCCACTCAGAAGAATTC  1133

seq1: chr12_101234539_101235344
seq2: B6Ng01-128J23.g_67_880

seq1  GAATTCTAGAAATGCCATACAAAGTTGACACCTCTGTGATGTTCTGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAATGCCATACAAAGTTGACACCTCTGTGATGTTCTGCCAG  50

seq1  CCCACATGTCCTCAAGGGATGGCTAGGTTAGGCTCAAGGAAAGTTCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATGTCCTCAAGGGATGGCTAGGTTAGGCTCAAGGAAAGTTCCACC  100

seq1  CCACCCAATACCTAGGTGTGGAAGGGAGGTGGGGGAGCCCCCAGGAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAATACCTAGGTGTGGAAGGGAGGTGGGGGAGCCCCCAGGAAGTC  150

seq1  CCTCCTTGGTGAGATGCCATTGTCTTGAATTTGGGGATGACTGCTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTGGTGAGATGCCATTGTCTTGAATTTGGGGATGACTGCTTCTGC  200

seq1  TCTGGGATGCTGTCTACAAGTCTGGGGGCAGCACTGGGCCTTCCCACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGATGCTGTCTACAAGTCTGGGGGCAGCACTGGGCCTTCCCACATA  250

seq1  CCCAGAATGCCCGGCACTACCATTTCCCCACTCGCAGTATTGTCTCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAATGCCCGGCACTACCATTTCCCCACTCGCAGTATTGTCTCCTAA  300

seq1  TCCCACCAGTTGCTTCTCCCTTCTGCCTCTTTGAACTTCTTCTCTGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCAGTTGCTTCTCCCTTCTGCCTCTTTGAACTTCTTCTCTGAGCT  350

seq1  CTTTCGGAAATGGCACCACCCTTCACATGAAGACGTGAGAAATCCTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGGAAATGGCACCACCCTTCACATGAAGACGTGAGAAATCCTCTTT  400

seq1  CCTCTACACGTAGCAGCCCAGCCTTGTCTGACTGTCCTTCTTGGTAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACACGTAGCAGCCCAGCCTTGTCTGACTGTCCTTCTTGGTAGGGA  450

seq1  GGGTCACCCTTTCATGTGCAGGATAAGACAAGTGACAGAGCAGCCAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACCCTTTCATGTGCAGGATAAGACAAGTGACAGAGCAGCCAACAT  500

seq1  GTAAACAGCCAAAGTGCATAACTATAGTTGATGGAGACACTGTG-TTTGT  549
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTAAACAGCCAAAGTGCATAACTATAGTTGATGGAGACACTGTGTTTTGT  550

seq1  GTCATCAGTGCCCACCCACCCTGTACCAGAGTCGTCATTATTGAGGATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAGTGCCCACCCACCCTGTACCAGAGTCGTCATTATTGAGGATAT  600

seq1  CAGTG-TTATTGACAGGTTAGAGACCCAGGCCCTGGC-TTGTTAC-GGAC  646
      ||||| ||||||||||||||||||||||||||||||| ||||||| ||||
seq2  CAGTGTTTATTGACAGGTTAGAGACCCAGGCCCTGGCTTTGTTACGGGAC  650

seq1  -AAAATCCACACATTCTAGAGTCAAGGAAATTATTAGTTTTCTTGCCATT  695
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAAATCCACACATTCTAGAGTC-AGGAAATTATTAGTTTTCTTGCCATT  699

seq1  TCCTTTAAGGCCCTTGAATCCAACTCTGAACAGACAA-GGACAAGCAGTA  744
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCCTTTAAGGCCCTTGAATCCAACTCTGAACAGACAAGGGACAAGCAGTA  749

seq1  ATTTGTGTCTACAGAGAGCT-GGGAACAAAGGCTCTGTTTA-TTTTGTAA  792
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  ATTTGTGTCTACAGAGAGCTGGGGAACAAAGGCTCTGTTTATTTTTGTAA  799

seq1  -TTTCTGTATCTGCA  806
       ||||||||||||||
seq2  TTTTCTGTATCTGCA  814