BAC Information

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BAC

Clone NameB6Ng01-129F24
Chromosome5 (Build37)12 (Build37)
Map Location 99,363,017 - 99,363,24556,419,419 - 56,420,191
singlet/doubletsingletsinglet
Overlap genePrkg2
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik, Bmp3
Downstream geneLOC100041680, Rasgef1b, A930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129F24.bB6Ng01-129F24.g
ACCDH930973DH930974
length331776
definitionDH930973|Mus musculus domesticus DNA, BAC clone: B6Ng01-129F24, 5' end.DH930974|Mus musculus domesticus DNA, BAC clone: B6Ng01-129F24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,363,017 - 99,363,245)(56,419,419 - 56,420,191)
sequence
aaagtcatctttggcaacaaagtgaatttaagggcagctgggctatgtga
gacacccataaaacaaaacagcaaggaaacaagcaacagcaacacaagac
agaggaagaaggagagagagagagagagagacagagacagacagagagag
agagagagagagagagagagaagacctggcagtgttggtgcacaccttta
atcccagcactcgggaggcagaggcaggaggatttctgagtttgaggcca
gcctggtctacagagtgagttccaggacagccagggctacacagagaaac
agagaaaccatgtctcgaaaaaacaaaaaaa
gaattccttccctaattctgcactcctcctccttttcctcctcctcttct
tcttttttttttttttttttttttttttttttttgagacagggtttctct
gtgtagccctggctgtcctaaaactcactttatagaccaggctggcctcc
aactcaaaaatccccctgcctctgccccccaagtgctgggattaaaggcg
tgtgccaccccccccggcttgctcttcatttttttctcatttggttttca
ctgggtttttgaaggtttttattttatgttatacatgtatgtctgtgcac
cacatagaggacactggattccctgggctacaaatacttatcagcctctg
tgtgggtactgggaattgaacctgggtcgtctagacaacagctggggctc
tgaaccactgagccatttccccagcccccttttctggaatttcaccaact
agagtccaacctcttttatgagattcaatttgaaacagtgcacttttttg
taccttctttttaatgcacccctgaattctgctttacagggtcaggagtg
tgcttggctcttttagagttacattggtggtttttaaatatggagaaagt
tttaggggcaaatctgagaggagtgctggactaaaaggtacctggatgga
atgcccaaagccaaggggataaagtcagtttaggcgttactgcattgcaa
aaaaaattaataagaaaattttctttatttaatacatggttaaacaatgc
atgtatttcctggcaaattccccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_99363017_99363245
seq2: B6Ng01-129F24.b_164_384 (reverse)

seq1  TTTTTTGGTTTTATCGAGACAGG--------GTTTCTCTGTATAGCCCTG  42
      |||||| ||||| |||||||| |        |||||||||| ||||||||
seq2  TTTTTTTGTTTTTTCGAGACATGGTTTCTCTGTTTCTCTGTGTAGCCCTG  50

seq1  GCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  92
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  GCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAAT  100

seq1  CTGCCTGCCTCTGCCTCGTGATTGCTGGGATTAAAGGCGTGTGCCACCA-  141
      |  ||||||||||||||  || ||||||||||||||| |||  ||| || 
seq2  CCTCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCACCAACAC  150

seq1  TGCCTGGCTCTAATATCTCTTACATATACATATGTTCTCTCTCTCTCTCT  191
      |||| || |||  | ||||                |||||||||||||||
seq2  TGCCAGG-TCTTCTCTCTC----------------TCTCTCTCTCTCTCT  183

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCC  229
      |||||| ||| ||||| |||||||||||||||||||||
seq2  CTCTCTGTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCC  221

seq1: chr12_56419419_56420191
seq2: B6Ng01-129F24.g_65_840

seq1  GAATTCCTTCCCTAATTCTGCACTCCTCCTCCTTTTCCTCCTCCTCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCCTAATTCTGCACTCCTCCTCCTTTTCCTCCTCCTCTTCT  50

seq1  TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCT  100

seq1  GTGTAGCCCTGGCTGTCCTAGAACTCACTTTATAGACCAGGCTGGCCTCC  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGTAGCCCTGGCTGTCCTAAAACTCACTTTATAGACCAGGCTGGCCTCC  150

seq1  AACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCG  200
      |||||| |||||| |||||||||||| |||||||||||||||||||||||
seq2  AACTCAAAAATCCCCCTGCCTCTGCCCCCCAAGTGCTGGGATTAAAGGCG  200

seq1  TGTGCCACCACGCCCGGCTTGCTCTTCATTTTTTTCTCATTTGGTTTTCA  250
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACCCCCCCCGGCTTGCTCTTCATTTTTTTCTCATTTGGTTTTCA  250

seq1  CTGGGTTTTTGAAGGTTTTTATTTTATGTTATACATGTATGTCTGTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTTTGAAGGTTTTTATTTTATGTTATACATGTATGTCTGTGCAC  300

seq1  CACATAGAGGACACTGGATTCCCTGGGCTACAGATACTTATCAGCCTCTG  350
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CACATAGAGGACACTGGATTCCCTGGGCTACAAATACTTATCAGCCTCTG  350

seq1  TGTGGGTACTGGGAATTGAACCTGGGTCGTCTAGACAACAGCTGGTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTGGGTACTGGGAATTGAACCTGGGTCGTCTAGACAACAGCTGGGGCTC  400

seq1  TGAGCCACTGAGCCATTTCCCCAGCCCCCTTTTCTGGAATTTCACCAACT  450
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACTGAGCCATTTCCCCAGCCCCCTTTTCTGGAATTTCACCAACT  450

seq1  AGAGTCCAACCTCTTTTATGAGATTCAATTTGAAACAGTGCACTTTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCAACCTCTTTTATGAGATTCAATTTGAAACAGTGCACTTTTTTG  500

seq1  TACCTTCTTTTTAATGCACCCCTGAATTCTGCTTTACAGGGTCAGGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCTTTTTAATGCACCCCTGAATTCTGCTTTACAGGGTCAGGAGTG  550

seq1  TGCTTGGCTCTTTTAGAGTTACATTGGTGGTTTTTAGATATGGAGAATGT  600
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  TGCTTGGCTCTTTTAGAGTTACATTGGTGGTTTTTAAATATGGAGAAAGT  600

seq1  TTTAGGGGCAGATCTGAGAGGAGTGCTGGACTAGAAGGTACGTGGATGGA  650
      |||||||||| |||||||||||||||||||||| ||||||| ||||||||
seq2  TTTAGGGGCAAATCTGAGAGGAGTGCTGGACTAAAAGGTACCTGGATGGA  650

seq1  ATGCCAAAAGCCAA-GGGATAAAGTCATGTTTAGGCGTTACTGCATTGCT  699
      ||||| |||||||| |||||||||||| ||||||||||||||||||||| 
seq2  ATGCCCAAAGCCAAGGGGATAAAGTCA-GTTTAGGCGTTACTGCATTGCA  699

seq1  AAAGAATTTAATAAG-ATATTTTCTTTATTTAATACATG--TTAACTATG  746
      ||| || |||||||| | |||||||||||||||||||||  | ||| |||
seq2  AAAAAAATTAATAAGAAAATTTTCTTTATTTAATACATGGTTAAACAATG  749

seq1  CACTGTATTT-CTGGCAATTTCCACATT  773
      || ||||||| ||||||| |||| ||||
seq2  CA-TGTATTTCCTGGCAAATTCCCCATT  776