BAC Information

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BAC

Clone NameB6Ng01-130J05
Chromosome12 (Build37)
Map Location 10,431,656 - 10,432,766
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC633030, LOC100042238, Osr1, LOC382567, Nt5c1b, Rdh14
Downstream geneLOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130J05.bB6Ng01-130J05.g
ACCDH931854DH931855
length1,0791,090
definitionDH931854|Mus musculus domesticus DNA, BAC clone: B6Ng01-130J05, 5' end.DH931855|Mus musculus domesticus DNA, BAC clone: B6Ng01-130J05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctatttagctctattccccatctttaatagggttatttgtttc
tctggagtctaacttcttgagttctttgtatatattggatattagcctat
tagccctctattggatataggattggtaaagatatttcccaggctgttgg
ttgctgttactcactttacatcccactcactgccccccttctcatcaacc
cttcctcaaatccttcccccatctccctccccttcttctctgagcaggtg
ccccccaccatgggtattcccctactctagtacttcaagtctctgcatgg
ctagggacttcctctcccactgaggcagtcaaggcagcccagtataaaag
aacatatcccacaaacaagcagcagcttttgggatagcccctgttctgtt
gtttgggagccacatgaagaccaagctgcacatctgcactatatgtgcgg
gaaggcctaggtccagccaggatatgttctttggtttcacctacacatct
tattaatatccagaatctgcttcctgggaataggtttgaggttctaagtt
tatagatcagctgatgctgcagcagctgctgccaggggtgattgtggtag
cggtgttgttgatggcagtgttgttggtggtggtggtgctactgctgctg
ctgctgctgctgctacttcctgcaacgatgatacttgtaggcatgtttat
aatgatcaaggacaacagtggaagatcttgcagattttgaagctcttcaa
agcaacatctttctgattacccagaaagcaataattttaaatcatattta
aacaaactatttaaaaaggtatatttgataagccatattgctgcttacaa
tcatcaagagactaaatacatattagttgtgaatgtttattttgacttta
tgttgaaaatgaagaacataacaaatctgtttcttttggaccctttagca
tggttatacccatattagtatgcaatgaagacgtagtagtcagagggtct
agaccaaaattggttgaacttttgatatgtttaggccaaaacagatgggt
ataaaatatctctttattttagattgatt
gaattcaggttactatttcttcaggcttttcctcggcctgcctcagtttc
ttgttttcctcagaaaatgacttcctgtttgcatgatggctgcaaaaccc
catgtatatggcgctctaagtagttgctcatctacagcaactgtgtctga
cctcacagggtctggagcgcacacccatctatgaactatcagctccatct
atacaccatcacctccataaagttggcatttcctgattggccaggcaagt
ttgagtagtaaagcaacccaatggccaccagaattgggtgtgttttgttt
agaaaagaagagtctgttattggaggcaagaaagaagcaataagcagagc
aaaacagcagctaccatttccatatctttcttcctatctagaggaggaaa
gtgagacttgacaagtaaatgtcttccaagtatcatgaactcatgaattc
attcacttaaccacaatttactgagcacttgttggaatttaccttgtgta
tctatcatagataaggtgacagaagaaaatacacttcacagacttattgg
agcagcagcaggataaaccatttagagcctaggttctgtatctatggggg
tttgcctcatatattaagctctgtgtctttggactacttttcttatggct
gtgatgaaaacatctggcctaagcactttaaaggaagaacaatttattct
ggttcacagttccaggacccagtctaccacagcagaagactgaagcagct
ggtcacattgtgtccatcatcaggaagcagaggggactgacttgctctca
ctggtgtttgatccaggaccccttataatggaacgaagccatgtaatgtc
ttaaagtaggtcttgccaccctaattcacccagtctagaacatctcttac
aaggaataatgcccaaaagcttgcctcctcattgtttcggtcctgtcagt
gaaagtatgaagcaaccattcagcatcaaagtgactaattcagctgcttc
atccagagcttggatggaacaaaagaagcgtggtaagcatgaattattaa
ccaattgctgagttacagggaactgcatgtagagatgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10431656_10432766
seq2: B6Ng01-130J05.g_68_1157

seq1  GAATTCAGGTTACTATTTCTTCAGGCTTTTCCTCGGCCTGCCTCAGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTACTATTTCTTCAGGCTTTTCCTCGGCCTGCCTCAGTTTC  50

seq1  TTGTTTTCCTCAGAAAATGACTTCCTGTTTGCATGATGGCTGCAAAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCCTCAGAAAATGACTTCCTGTTTGCATGATGGCTGCAAAACCC  100

seq1  CATGTATATGGCGCTCTAAGTAGTTGCTCATCTACAGCAACTGTGTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATATGGCGCTCTAAGTAGTTGCTCATCTACAGCAACTGTGTCTGA  150

seq1  CCTCACAGGGTCTGGAGCGCACACCCATCTATGAACTATCAGCTCCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGGGTCTGGAGCGCACACCCATCTATGAACTATCAGCTCCATCT  200

seq1  ATACACCATCACCTCCATAAAGTTGGCATTTCCTGATTGGCCAGGCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCATCACCTCCATAAAGTTGGCATTTCCTGATTGGCCAGGCAAGT  250

seq1  TTGAGTAGTAAAGCAACCCAATGGCCACCAGAATTGGGTGTGTTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAGTAAAGCAACCCAATGGCCACCAGAATTGGGTGTGTTTTGTTT  300

seq1  AGAAAAGAAGAGTCTGTTATTGGAGGCAAGAAAGAAGCAATAAGCAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAGAGTCTGTTATTGGAGGCAAGAAAGAAGCAATAAGCAGAGC  350

seq1  AAAACAGCAGCTACCATTTCCATATCTTTCTTCCTATCTAGAGGAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCAGCTACCATTTCCATATCTTTCTTCCTATCTAGAGGAGGAAA  400

seq1  GTGAGACTTGACAAGTAAATGTCTTCCAAGTATCATGAACTCATGAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACTTGACAAGTAAATGTCTTCCAAGTATCATGAACTCATGAATTC  450

seq1  ATTCACTTAACCACAATTTACTGAGCACTTGTTGGAATTTACCTTGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTTAACCACAATTTACTGAGCACTTGTTGGAATTTACCTTGTGTA  500

seq1  TCTATCATAGATAAGGTGACAGAAGAAAATACACTTCACAGACTTATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCATAGATAAGGTGACAGAAGAAAATACACTTCACAGACTTATTGG  550

seq1  AGCAGCAGCAGGATAAACCATTTAGAGCCTAGGTTCTGTATCTATGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGCAGGATAAACCATTTAGAGCCTAGGTTCTGTATCTATGGGGG  600

seq1  TTTGCCTCATATATTAAGCTCTGTGTCTTTGGACTACTTTTCTTATGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCATATATTAAGCTCTGTGTCTTTGGACTACTTTTCTTATGGCT  650

seq1  GTGATGAAAACATCTGGCCTAAGCACTTTAAAGGAAGAACAATTTATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAAACATCTGGCCTAAGCACTTTAAAGGAAGAACAATTTATTCT  700

seq1  GGTTCACAGTTCCAGGACCCAGTCTACCACAGCAGAAGACTGAAGCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACAGTTCCAGGACCCAGTCTACCACAGCAGAAGACTGAAGCAGCT  750

seq1  GGTCACATTGTGTCCATCATCAGGAAGCAGAGGGGGACTGACTTGCTCTC  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTCACATTGTGTCCATCATCAGGAAGCAGA-GGGGACTGACTTGCTCTC  799

seq1  ACTGGTGTTTGATCCAGGACCCCTTATAATGGAACGAGGCCATGT-ATGT  849
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  ACTGGTGTTTGATCCAGGACCCCTTATAATGGAACGAAGCCATGTAATGT  849

seq1  C-TAAAGTAGGTCTTGCCACCCTAATTCACCCAGTCTAGAACATCTCTTA  898
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGTAGGTCTTGCCACCCTAATTCACCCAGTCTAGAACATCTCTTA  899

seq1  C-AGGAATAATGCCCAAAAGCTTGCCTCCTCATTGGTTTTCGGTCCTGTC  947
      | |||||||||||||||||||||||||||||||||  |||||||||||||
seq2  CAAGGAATAATGCCCAAAAGCTTGCCTCCTCATTG--TTTCGGTCCTGTC  947

seq1  AGGTTGACAGTATGAAGCAACCATTTCAGCATCCATAGTGACTATATCAG  997
      ||  ||| ||||||||||||||| |||||||| || ||||||||  ||||
seq2  AG--TGAAAGTATGAAGCAACCA-TTCAGCAT-CAAAGTGACTAATTCAG  993

seq1  CTGCCTTCATTCACAGAGCTTGAATTGGAACAAAAGAAGGCGTGGGTAAA  1047
      ||| ||||||   ||||||||| | ||||||||||||| ||||||   ||
seq2  CTG-CTTCAT--CCAGAGCTTGGA-TGGAACAAAAGAA-GCGTGG--TAA  1036

seq1  GCATGGAATTAATTAAACCAATAGGGCTGAGGTGATCAGGGAAACAGGGA  1097
      |||| ||||||  | |||||||   |||||| |   |||||||    | |
seq2  GCAT-GAATTA--TTAACCAAT--TGCTGAGTT--ACAGGGAA--CTGCA  1077

seq1  TGGTAGAGATGAAA  1111
      | ||||||||||||
seq2  T-GTAGAGATGAAA  1090