BAC Information

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BAC

Clone NameB6Ng01-131B04
Chromosome12 (Build37)
Map Location 93,431,059 - 93,568,621
singlet/doubletdoublet
Overlap geneLOC628116
Upstream gene4930534B04Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131B04.bB6Ng01-131B04.g
ACCDH932224DH932225
length1,1661,040
definitionDH932224|Mus musculus domesticus DNA, BAC clone: B6Ng01-131B04, 5' end.DH932225|Mus musculus domesticus DNA, BAC clone: B6Ng01-131B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,567,438 - 93,568,621)(93,431,059 - 93,432,116)
sequence
gaattctacctctacatacatatatagcacatcggaaaaatgtaaagaca
cgtcaaggtcaaattttcctcattcacgcctcaaataggaatgtttgctt
tggcaaacatcttgattgcaaatttgcgcatgatttttttttcaggtcag
gcttaaattcttgatgcacagaaattatgatataattacacatgtcgttt
ccatctattaggcttatgctaatttgttttgtagcaaagaaaatgatatc
tataatatattgtgatataggatattaaattacaacccaaaataatttgc
agaggggcacaatgacttctgcaagacattccagatatcattggaaataa
agatgttacttaatgtgaaaagaagatgaattctgaggtcccaacatcat
tgtaagtagttgagttatctctaatgactataatatcagagttgttgtca
tgtacacaaagataaccacatacagatacaagttaatagataccaagtcc
tcttgagtaactgactttttcatacaaatctatttttgagcacctgttca
ataaacaaaaattgtcatgtgaataataatatgtactaattaaatcagaa
aatgtaaagtcagttaagacaccaaagttgttgaaatatgtacaagtcaa
aaagaaccttgtgcaggagccaaaaaggagagaagcatagactatttatc
ctctggcctacaaaggagactaaggcaggaaactatagggagtctgccct
aactgaagagagaatatagtgagaaggtctaatttagaccattatgtttt
taatgttatagtagcaaaggtgtatgcaaatgagctaaagaagactcaaa
tgataagtagtaagtggtccagctattattctcttgggagaagaatttac
attcacgtttatatgaaagcaaaacccactgtatatttttggcttctttg
tcaaagatcagatccaagtggttttacttcgggtctcaattctattccat
tgatcatgtatctgtctctgtacaaattccatgcagttttatcactattg
ctctgcagtaaagctgagtcaggatggtgatgccccagctgttcttttat
tgtagaatgctttccgctattctgggttttgctttcgatgaattgagaaa
tggttcttcatgtctt
gaattcttcactgtggagactcatggatttctttgcttctttctcatcct
acctaggccagtttatagaggtgaagctcttagagtcatcctctagggga
aaaaatatccacatccaagagttgttggaatggtttgagtaggaacctgc
atcaatcgttgttggtttcatattgcagaagtcacccaccagcaaagact
attttatacaagtgagaaatggaaatttatcttacttaagccatttgact
gtttgttctttgcaatcattaaatataatccgaactgaaactgcatgttc
ttgacatcccaaattagaaagataatgcctacacgcttgctttaaaagtg
tgcttatttttaaaaccctcactaattgtatgagatacatgattccaatt
ttcaacctcaagatccacatattttctttctttcttttttttttttttgt
gagaagtattttagttgcatttggaaagatggttctttgtgaaaccaaaa
gttctgtgttcagtctgagtgtctctaagttttcatcatttgactgcttt
aggtatgctctgtttatgtgaatttctacttttatcactggactaacatt
tcccatggttttagttactatgcatgtgcgtcatggcggctcccctctct
atctcattccttgtgacaggaccttttcctgacaatcatattcctcacag
tcacctcttggtgtgcttgttcactctgtccccatccaactggatctttc
ttgccccatcactcataaaaccgagttacaatagctataattctcttgca
atcagtcaattgctgcagttcacaaatggtttattagactgttaacctcc
attagctgagagttaggtcattagctgcctctgataaccatttctcaagg
tttatgacttaatgatcatttaaataccgacgtttattcttcatgtgatt
gaaacaagtttcaaaagaacttaaactcaggtaaatgagtatatcattag
aattctataacttagagcaccattaatcagggactgacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_93567438_93568621
seq2: B6Ng01-131B04.b_48_1213 (reverse)

seq1  AAGACATGGAAAGAA-CAATTCTCAAATTCATCTGGAAAGGCAAAAAAAC  49
      ||||||||  ||||| || ||||| ||||||||  |||||     |||||
seq2  AAGACATG--AAGAACCATTTCTC-AATTCATC--GAAAG----CAAAAC  41

seq1  CCAGAATAGC-GAAAGCAATTCCTAACAATAAAAGAACAGCTGGGGGCAT  98
      |||||||||| |||||| ||||   ||||||||||||||||| |||||||
seq2  CCAGAATAGCGGAAAGC-ATTC--TACAATAAAAGAACAGCT-GGGGCAT  87

seq1  CACCATCCCTGACCTCAAGCTTTACTGCAGAGCAATAGTGATAAAAACTG  148
      |||||| ||||| ||| ||||||||||||||||||||||||| |||||||
seq2  CACCAT-CCTGA-CTC-AGCTTTACTGCAGAGCAATAGTGAT-AAAACTG  133

seq1  CATGGAATTGGTACAGAGACAGATACATTGATCAATGGAATAGAATTGAG  198
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  CATGGAATTTGTACAGAGACAGATACA-TGATCAATGGAATAGAATTGAG  182

seq1  ACCCCGAAGTAAAACCACTTGGATCTTGATCTTTGACAAAGAAGCCAAAA  248
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  A-CCCGAAGTAAAACCACTTGGATC-TGATCTTTGACAAAGAAGCCAAAA  230

seq1  ATATACAGTGGGTTTTGCTTTCATATAAACCTGAATGTTAATTCTTCTCC  298
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  ATATACAGTGGGTTTTGCTTTCATATAAACGTGAATGTAAATTCTTCTCC  280

seq1  CAAGAGAATAATAGCTGGACCACTTACTACTTATCATTTGAGTCTTCTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAATAATAGCTGGACCACTTACTACTTATCATTTGAGTCTTCTTT  330

seq1  AGCTCATTTGCATACACCTTTGCTACTATAACATTAAAAACATAATGGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTTGCATACACCTTTGCTACTATAACATTAAAAACATAATGGTC  380

seq1  TAAATTAGACCTTCTCACTATATTCTCTCTTCAGTTAGGGCAGACTCCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAGACCTTCTCACTATATTCTCTCTTCAGTTAGGGCAGACTCCCT  430

seq1  ATAGTTTCCTGCCTTAGTCTCCTTTGTAGGCCAGAGGATAAATAGTCTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCCTGCCTTAGTCTCCTTTGTAGGCCAGAGGATAAATAGTCTAT  480

seq1  GCTTCTCTCCTTTTTGGCTCCTGCACAAGGTTCTTTTTGACTTGTACATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTCCTTTTTGGCTCCTGCACAAGGTTCTTTTTGACTTGTACATA  530

seq1  TTTCAACAACTTTGGTGTCTTAACTGACTTTACATTTTCTGATTTAATTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACAACTTTGGTGTCTTAACTGACTTTACATTTTCTGATTTAATTA  580

seq1  GTACATATTATTATTCACATGACAATTTTTGTTTATTGAACAGGTGCTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATTATTATTCACATGACAATTTTTGTTTATTGAACAGGTGCTCA  630

seq1  AAAATAGATTTGTATGAAAAAGTCAGTTACTCAAGAGGACTTGGTATCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGATTTGTATGAAAAAGTCAGTTACTCAAGAGGACTTGGTATCTA  680

seq1  TTAACTTGTATCTGTATGTGGTTATCTTTGTGTACATGACAACAACTCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTGTATCTGTATGTGGTTATCTTTGTGTACATGACAACAACTCTG  730

seq1  ATATTATAGTCATTAGAGATAACTCAACTACTTACAATGATGTTGGGACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAGTCATTAGAGATAACTCAACTACTTACAATGATGTTGGGACC  780

seq1  TCAGAATTCATCTTCTTTTCACATTAAGTAACATCTTTATTTCCAATGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTCATCTTCTTTTCACATTAAGTAACATCTTTATTTCCAATGAT  830

seq1  ATCTGGAATGTCTTGCAGAAGTCATTGTGCCCCTCTGCAAATTATTTTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAATGTCTTGCAGAAGTCATTGTGCCCCTCTGCAAATTATTTTGG  880

seq1  GTTGTAATTTAATATCCTATATCACAATATATTATAGATATCATTTTCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAATTTAATATCCTATATCACAATATATTATAGATATCATTTTCTT  930

seq1  TGCTACAAAACAAATTAGCATAAGCCTAATAGATGGAAACGACATGTGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAAAACAAATTAGCATAAGCCTAATAGATGGAAACGACATGTGTA  980

seq1  ATTATATCATAATTTCTGTGCATCAAGAATTTAAGCCTGACCTGAAAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCATAATTTCTGTGCATCAAGAATTTAAGCCTGACCTGAAAAAA  1030

seq1  AAATCATGCGCAAATTTGCAATCAAGATGTTTGCCAAAGCAAACATTCCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGCGCAAATTTGCAATCAAGATGTTTGCCAAAGCAAACATTCCT  1080

seq1  ATTTGAGGCGTGAATGAGGAAAATTTGACCTTGACGTGTCTTTACATTTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGGCGTGAATGAGGAAAATTTGACCTTGACGTGTCTTTACATTTT  1130

seq1  TCCGATGTGCTATATATGTATGTAGAGGTAGAATTC  1184
      ||||||||||||||||||||||||||||||||||||
seq2  TCCGATGTGCTATATATGTATGTAGAGGTAGAATTC  1166

seq1: chr12_93431059_93432116
seq2: B6Ng01-131B04.g_66_1105

seq1  GAATTCTTCACTGTGGAGACTCATGGATTTCTTTGCTTCTTTCTCATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACTGTGGAGACTCATGGATTTCTTTGCTTCTTTCTCATCCT  50

seq1  ACCTAGGCCAGTTTATAGAGGTGAAGCTCTTAGAGTCATCCTCTAGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGCCAGTTTATAGAGGTGAAGCTCTTAGAGTCATCCTCTAGGGGA  100

seq1  AAAAATATCCACATCCAAGAGTTGTTGGAATGGTTTGAGTAGGAACCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATCCACATCCAAGAGTTGTTGGAATGGTTTGAGTAGGAACCTGC  150

seq1  ATCAATCGTTGTTGGTTTCATATTGCAGAAGTCACCCACCAGCAAAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCGTTGTTGGTTTCATATTGCAGAAGTCACCCACCAGCAAAGACT  200

seq1  ATTTTATACAAGTGAGAAATGGAAATTTATCTTACTTAAGCCATTTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATACAAGTGAGAAATGGAAATTTATCTTACTTAAGCCATTTGACT  250

seq1  GTTTGTTCTTTGCAATCATTAAATATAATCCGAACTGAAACTGCATGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCTTTGCAATCATTAAATATAATCCGAACTGAAACTGCATGTTC  300

seq1  TTGACATCCCAAATTAGAAAGATAATGCCTACACGCTTGCTTTAAAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATCCCAAATTAGAAAGATAATGCCTACACGCTTGCTTTAAAAGTG  350

seq1  TGCTTATTTTTAAAACCCTCACTAATTGTATGAGATACATGATTCCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTTTTAAAACCCTCACTAATTGTATGAGATACATGATTCCAATT  400

seq1  TTCAACCTCAAGATCCACATATTTTCTTTCTTTCTTTTTTTTTTTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCTCAAGATCCACATATTTTCTTTCTTTCTTTTTTTTTTTTTTGT  450

seq1  GAGAAGTATTTTAGTTGCATTTGGAAAGATGGTTCTTTGTGAAACCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTATTTTAGTTGCATTTGGAAAGATGGTTCTTTGTGAAACCAAAA  500

seq1  GTTCTGTGTTCAGTCTGAGTGTCTCTAAGTTTTCATCATTTGACTGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGTTCAGTCTGAGTGTCTCTAAGTTTTCATCATTTGACTGCTTT  550

seq1  AGGTATGCTCTGTTTATGTGAATTTCTACTTTTATCACTGGACTAACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGCTCTGTTTATGTGAATTTCTACTTTTATCACTGGACTAACATT  600

seq1  TCCCATGGTTTTAGTTACTATGCATGTGCGTCATGGCGGCTCCCCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGGTTTTAGTTACTATGCATGTGCGTCATGGCGGCTCCCCTCTCT  650

seq1  ATCTCATTCCTTGTGACAGGACCTTTTCCTGACAATCATATTCCTCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTCCTTGTGACAGGACCTTTTCCTGACAATCATATTCCTCACAG  700

seq1  TCACCTCTTGGTGTGCTTGTTCACTCTGTCCCCATCCAACTGGATCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTTGGTGTGCTTGTTCACTCTGTCCCCATCCAACTGGATCTTTC  750

seq1  TTGCCCCATCACTCATAAAACCGAGTTACAATAGCTATAATTCTCTTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCATCACTCATAAAACCGAGTTACAATAGCTATAATTCTCTTGCA  800

seq1  ATCAGTCAATTGCTGCAGTTCACAAATGGTTTATTAGACTGTTAACCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCAATTGCTGCAGTTCACAAATGGTTTATTAGACTGTTAACCTCC  850

seq1  ATTAGCTGAGGAGTTAGGTCATTAGCTGCCTCTGATAACCATTTCTCAAG  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTGA-GAGTTAGGTCATTAGCTGCCTCTGATAACCATTTCTCAAG  899

seq1  GTTTATGACTTAAATGATCATTTAAATACCGACGTTTATTCTTTCATGTG  950
      ||||||||||| ||||||||||||||||||||||||||||| ||||||| 
seq2  GTTTATGACTT-AATGATCATTTAAATACCGACGTTTATTC-TTCATGT-  946

seq1  GATTGAAACAAAGTTTCAAAAGAACTTAAAACTCAGGGGTAAAATGAGTA  1000
      ||||||||| ||||||||||||||||| |||||||||    |||||||| 
seq2  GATTGAAAC-AAGTTTCAAAAGAACTT-AAACTCAGG---TAAATGAGT-  990

seq1  ATATTCATTAAGAATATCTATAAACTTAGAGCACCAATTTAATTCAGGGA  1050
      ||| ||||| ||||| ||||| ||||||||||||||  |||| |||||||
seq2  ATA-TCATT-AGAAT-TCTAT-AACTTAGAGCACCA--TTAA-TCAGGGA  1033

seq1  CCTGACAT  1058
       |||||||
seq2  -CTGACAT  1040