BAC Information

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BAC

Clone NameB6Ng01-131N21
Chromosome12 (Build37)
Map Location 114,246,088 - 114,385,979
singlet/doubletdoublet
Overlap genePacs2, Tex22, Mta1, Crip2
Upstream geneTdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6
Downstream geneCrip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131N21.bB6Ng01-131N21.g
ACCDH932816DH932817
length8821,008
definitionDH932816|Mus musculus domesticus DNA, BAC clone: B6Ng01-131N21, 5' end.DH932817|Mus musculus domesticus DNA, BAC clone: B6Ng01-131N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,246,088 - 114,246,967)(114,384,984 - 114,385,979)
sequence
gaattcaacctggtctacagagtgagttcttggatagacagggttacaca
gagagaccctgtctcagaaaacaaaacaaaaaacaacaaaaacaaacaaa
cacaagagagacaaagagacacagagagacagagacggagaacttaatgt
gtatgggtattgtgcctgcttgtatgtttacacaccacgtttatgtctgg
taccaaaagagtccagaagaggctgtctgattcccttagctgtagttgca
gatggttgaaagatgttttgtgggttctgggaatcgaacccaggtcttct
tcaagagcaaacagcgctcttaaccatgcagcaacttctcaacccctatg
gcattttcttacagcagcctgacttacaacacactatgtatgcaaagcat
ttgagtcattgtttgagggttaggggcagagactcctcctgactatctta
tgactctgaatgctgttaactttgactagtttcatcatttttccaggtgt
tccccttgcatttcattggcttattaaattctgcccacaatggcaacatt
gtctcctcctgttttaaagatttgaatgacatgggctaatgtagcacaaa
catgatgctagtctaaatgcccacagacagagggcaaagtaggttggtta
cagttcatccagattgtgggatgtgagaaagctactgtacctccagtcca
gaaaacatcaaggattgagggtttgtggcttcctgacaagtgtcaaacat
tgtatatggaccccaatccagatttcaaaagaaaagcaaaaagaatgtgg
acttgtagacaaagaaggtgaaatccaggcatggcagcacgcacctgtaa
tcccagtagtgtgtgggaggggggaatgggga
gaattccagtctctccaaaccagcagctgatggcctggagcccacccccg
cagtcagtctggcctgggaaaaagggctgcccacacctggcaccctgggc
tccggccagcccgaactgtacccgctcaatagccagagcactagcacatg
gtgatccttttgataccctgcccacaggcttcagccagcagccagtgagc
agggccaaccatgtcagatctagagataaatgggatctgcttgaggaaga
ctcgggcagaagggttcccagggccgatgcaggagaagcaaggctaggca
ggagggaggatgctagggtgttggccagatgatcaaagattaaggtatgt
ggggagaaggagccataggctgggcaccccataaagaagtccaactgagt
atactggtaaacagagaggagatcagaaggcctggttggagagtgcagca
aggctagataggtgggtggtggtcgcgtggaagggcgcgtcaggggaact
cctgcaactaaactgtgtagagcagcctgggctgcgtctccttgtgaggt
tctggactcggcagaacttggaatggagtgagatggtctgttggcatcta
gagtcatctctgagtctagctgtttatttgggagatagaaaagctcaggg
cactctcccataagggtggatgccagacaaaggcttcttattctctcctc
catctttgggtgcatcggaagctgggtgccactgacgcgacctggcaacg
cagcgggacaccgcctggcaacaagacccagacataacagttcgcagcac
cgcccgcgttttccacgacaactcccttgtaaacaaacaccaagcatacg
ttcatctttctcggcaggaaaagccagattcctgcccctgccccctccga
tgtacagcaaactggccgcagggcggtggatggatctgccctgggaagac
ccctgccctcgtggcccaaccaggggaatccctttctgtcctcagtggtt
ccgcccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_114246088_114246967
seq2: B6Ng01-131N21.b_48_929

seq1  GAATTCAACCTGGTCTACAGAGTGAGTTCTTGGATAGACAGGGTTACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTGGTCTACAGAGTGAGTTCTTGGATAGACAGGGTTACACA  50

seq1  GAGAGACCCTGTCTCAGAAAACAAAACAAAAAACAACAAAAACAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCCTGTCTCAGAAAACAAAACAAAAAACAACAAAAACAAACAAA  100

seq1  CACAAGAGAGACAAAGAGACACAGAGAGACAGAGACGGAGAACTTAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGAGACAAAGAGACACAGAGAGACAGAGACGGAGAACTTAATGT  150

seq1  GTATGGGTATTGTGCCTGCTTGTATGTTTACACACCACGTTTATGTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGTATTGTGCCTGCTTGTATGTTTACACACCACGTTTATGTCTGG  200

seq1  TACCAAAAGAGTCCAGAAGAGGCTGTCTGATTCCCTTAGCTGTAGTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAAGAGTCCAGAAGAGGCTGTCTGATTCCCTTAGCTGTAGTTGCA  250

seq1  GATGGTTGAAAGATGTTTTGTGGGTTCTGGGAATCGAACCCAGGTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGAAAGATGTTTTGTGGGTTCTGGGAATCGAACCCAGGTCTTCT  300

seq1  TCAAGAGCAAACAGCGCTCTTAACCATGCAGCAACTTCTCAACCCCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGCAAACAGCGCTCTTAACCATGCAGCAACTTCTCAACCCCTATG  350

seq1  GCATTTTCTTACAGCAGCCTGACTTACAACACACTATGTATGCAAAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCTTACAGCAGCCTGACTTACAACACACTATGTATGCAAAGCAT  400

seq1  TTGAGTCATTGTTTGAGGGTTAGGGGCAGAGACTCCTCCTGACTATCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCATTGTTTGAGGGTTAGGGGCAGAGACTCCTCCTGACTATCTTA  450

seq1  TGACTCTGAATGCTGTTAACTTTGACTAGTTTCATCATTTTTCCAGGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGAATGCTGTTAACTTTGACTAGTTTCATCATTTTTCCAGGTGT  500

seq1  TCCCCTTGCATTTCATTGGCTTATTAAATTCTGCCCACAATGGCAACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTGCATTTCATTGGCTTATTAAATTCTGCCCACAATGGCAACATT  550

seq1  GTCTCCTCCTGTTTTAAAGATTTGAATGACATGGGCTAATGTAGCACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTCCTGTTTTAAAGATTTGAATGACATGGGCTAATGTAGCACAAA  600

seq1  CATGATGCTAGTCTAAATGCCCACAGACAGAGGGCAAAGTAGGTTGGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGCTAGTCTAAATGCCCACAGACAGAGGGCAAAGTAGGTTGGTTA  650

seq1  CAGTTCATCCAGATTGTGGGATGTGAGAAAGCTACTGTACCTCCAGTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCATCCAGATTGTGGGATGTGAGAAAGCTACTGTACCTCCAGTCCA  700

seq1  GAAAACATCAAGGATTGAGGGTTTGTGGCTTCCTGACAAGTGTCAAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATCAAGGATTGAGGGTTTGTGGCTTCCTGACAAGTGTCAAACAT  750

seq1  TGTATATGGACCCCAATCCAGATTTCAAAAGAAAAGC-AAAAGAATGTGG  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTATATGGACCCCAATCCAGATTTCAAAAGAAAAGCAAAAAGAATGTGG  800

seq1  ACTTGTAGACAAAGAAGGTGAAATCCAGGCATGGCAGCACGCACCTGTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAGACAAAGAAGGTGAAATCCAGGCATGGCAGCACGCACCTGTAA  850

seq1  TCCCAGTAGTGTGTGGGA-GGGGGAATGGGGA  880
      |||||||||||||||||| |||||||||||||
seq2  TCCCAGTAGTGTGTGGGAGGGGGGAATGGGGA  882

seq1: chr12_114384984_114385979
seq2: B6Ng01-131N21.g_69_1076 (reverse)

seq1  CTGGGCGGAACCTTTGAGGACAAGAAGGGGATTCCCCTGGTTGGGCCACG  50
      ||||||||||||  ||||||| |||| |||||||||||||||||||||||
seq2  CTGGGCGGAACCACTGAGGAC-AGAAAGGGATTCCCCTGGTTGGGCCACG  49

seq1  AGGGCAGGGGTCTTCCCAGGGCAGATCCATCC-CCGCCCTGCGGCCAGCT  99
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  AGGGCAGGGGTCTTCCCAGGGCAGATCCATCCACCGCCCTGCGGCCAG-T  98

seq1  TTGCTGTACATCGGA-GGGGCA-GGGCAGG-ATCTGGCTTTTCCTGCCGA  146
      ||||||||||||||| |||||| ||||||| |||||||||||||||||||
seq2  TTGCTGTACATCGGAGGGGGCAGGGGCAGGAATCTGGCTTTTCCTGCCGA  148

seq1  GAAAGATG-ACGT-TGCTTGGTGTTTGTTTCCAA-GGAGTTGTCGTGG-A  192
      |||||||| |||| |||||||||||||||| ||| ||||||||||||| |
seq2  GAAAGATGAACGTATGCTTGGTGTTTGTTTACAAGGGAGTTGTCGTGGAA  198

seq1  AACGC-GGCGGTGCTGCG-ACTGTT-TGTCTGGGTCTTGTTGCCAGGCGG  239
      ||||| |||||||||||| |||||| ||||||||||||||||||||||||
seq2  AACGCGGGCGGTGCTGCGAACTGTTATGTCTGGGTCTTGTTGCCAGGCGG  248

seq1  TGT-CCGCTGCGTTGCCAGGTCGCGTCAGTGGCA-CCAGCTTCCGATGCA  287
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTCCCGCTGCGTTGCCAGGTCGCGTCAGTGGCACCCAGCTTCCGATGCA  298

seq1  CCC-AAGATGGAGGAGAGAATAAGAAGCCTTTGTCTGGCATCCACCCTTA  336
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGATGGAGGAGAGAATAAGAAGCCTTTGTCTGGCATCCACCCTTA  348

seq1  TGGGAGAGTGCCCTGAGCTTTTCTATCTCCCAAATAAACAGCTAGACTCA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGTGCCCTGAGCTTTTCTATCTCCCAAATAAACAGCTAGACTCA  398

seq1  GAGATGACTCTAGATGCCAACAGACCATCTCACTCCATTCCAAGTTCTGC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGACTCTAGATGCCAACAGACCATCTCACTCCATTCCAAGTTCTGC  448

seq1  CGAGTCCAGAACCTCACAAGGAGACGCAGCCCAGGCTGCTCTACACAGTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCCAGAACCTCACAAGGAGACGCAGCCCAGGCTGCTCTACACAGTT  498

seq1  TAGTTGCAGGAGTTCCCCTGACGCGCCCTTCCACGCGACCACCACCCACC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCAGGAGTTCCCCTGACGCGCCCTTCCACGCGACCACCACCCACC  548

seq1  TATCTAGCCTTGCTGCACTCTCCAACCAGGCCTTCTGATCTCCTCTCTGT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGCCTTGCTGCACTCTCCAACCAGGCCTTCTGATCTCCTCTCTGT  598

seq1  TTACCAGTATACTCAGTTGGACTTCTTTATGGGGTGCCCAGCCTATGGCT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGTATACTCAGTTGGACTTCTTTATGGGGTGCCCAGCCTATGGCT  648

seq1  CCTTCTCCCCACATACCTTAATCTTTGATCATCTGGCCAACACCCTAGCA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCCCACATACCTTAATCTTTGATCATCTGGCCAACACCCTAGCA  698

seq1  TCCTCCCTCCTGCCTAGCCTTGCTTCTCCTGCATCGGCCCTGGGAACCCT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTCCTGCCTAGCCTTGCTTCTCCTGCATCGGCCCTGGGAACCCT  748

seq1  TCTGCCCGAGTCTTCCTCAAGCAGATCCCATTTATCTCTAGATCTGACAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCGAGTCTTCCTCAAGCAGATCCCATTTATCTCTAGATCTGACAT  798

seq1  GGTTGGCCCTGCTCACTGGCTGCTGGCTGAAGCCTGTGGGCAGGGTATCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCCCTGCTCACTGGCTGCTGGCTGAAGCCTGTGGGCAGGGTATCA  848

seq1  AAAGGATCACCATGTGCTAGTGCTCTGGCTATTGAGCGGGTACAGTTCGG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCACCATGTGCTAGTGCTCTGGCTATTGAGCGGGTACAGTTCGG  898

seq1  GCTGGCCGGAGCCCAGGGTGCCAGGTGTGGGCAGCCCTTTTTCCCAGGCC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCGGAGCCCAGGGTGCCAGGTGTGGGCAGCCCTTTTTCCCAGGCC  948

seq1  AGACTGACTGCGGGGGTGGGCTCCAGGCCATCAGCTGCTGGTTTGGAGAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACTGCGGGGGTGGGCTCCAGGCCATCAGCTGCTGGTTTGGAGAG  998

seq1  ACTGGAATTC  996
      ||||||||||
seq2  ACTGGAATTC  1008