BAC Information

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BAC

Clone NameB6Ng01-132P16
Chromosome12 (Build37)11 (Build37)
Map Location 112,937,425 - 112,938,61788,790,802 - 88,790,957
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneWdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik
Downstream geneBag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132P16.bB6Ng01-132P16.g
ACCDH933649DH933650
length1,180134
definitionDH933649|Mus musculus domesticus DNA, BAC clone: B6Ng01-132P16, 5' end.DH933650|Mus musculus domesticus DNA, BAC clone: B6Ng01-132P16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(112,937,425 - 112,938,617)(88,790,802 - 88,790,957)
sequence
gaattctaacaaacaagaacatttgccatgaaaacaatattctctattta
gggctattttcagataagaatattaaaacaggggccggggctacagcttg
gttgagagagaggaccaaggcctggagactgtgttcctagttcagatggg
ccttggtatatgcatgtatgcactcataagcacttatgtgtgcacaattc
ggcaagttgcattaacaatgaacagtgcttaaggtccggcccgagggtta
tgaccttgggttagcaagtctacttccttctttgatagtttctaggactc
tcagaaacaagaccgcaaacccctgtatacagtagaaataccaacttctc
tcccaagcccttggcctaggtttttaccttatctgctgtaatccctccat
gcagggaccgctctgatcacatttactgagaaaagtggttccttagcaac
ctcctgagatgtaactaaagaagccactaaaattgtgcttaagtgagact
ctcttgagaagcccacacccacgcttggatgtgtcttatgtattccctga
ggtcctctctgttaaccacaatgtctaaaactttgtcaaactttcctttc
tgatagattccagctctgcttcattctgtcctaaagctcccttctgttca
gaactcccacttcgctgggcatggtgccacacacccttaatcccaacaat
ccagagaccgaggcaggcagatctctgaatttgaggccagcctgatctac
agaaagagaattccaggacagccaagactacgccaacatggaaaaccaca
acccagaaagaatccctgggtcacccgcgtgagctgctgcaggcagcagt
gtgtcttcagctgcagccctgcctctgacccgctaggtcatgacttctca
acctctgctctctcctggccaatctggtcctgaagctgagcccaggcctc
tctgcctgcacctttcccagcctagttcagccaggacttgtcttttagac
ttcacctattcatccactgagcctccagctgagcagagtggggctcgcag
accacagtctggggatacttcagccatagggctccttccctcagctccca
tctcagtaggcctggtgggagtgcatgctcagatgccgatggaaagaaca
tgtgggcaggaagggtgggaacctgcctac
aaaattaacagcatagttttgaaaatcctttgtctgtgtgtgtgtttgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
cgcccgcgctataaatgtatgtcaaggcaacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_112937425_112938617
seq2: B6Ng01-132P16.b_48_1227

seq1  GAATTCTAACAAACAAGAACATTTGCCATGAAAACAATATTCTCTATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACAAACAAGAACATTTGCCATGAAAACAATATTCTCTATTTA  50

seq1  GGGCTATTTTCAGATAAGAATATTAAAACAGGGGCCGGGGCTACAGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATTTTCAGATAAGAATATTAAAACAGGGGCCGGGGCTACAGCTTG  100

seq1  GTTGAGAGAGAGGACCAAGGCCTGGAGACTGTGTTCCTAGTTCAGATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAGAGAGGACCAAGGCCTGGAGACTGTGTTCCTAGTTCAGATGGG  150

seq1  CCTTGGTATATGCATGTATGCACTCATAAGCACTTATGTGTGCACAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTATATGCATGTATGCACTCATAAGCACTTATGTGTGCACAATTC  200

seq1  GGCAAGTTGCATTAACAATGAACAGTGCTTAAGGTCCGGCCCGAGGGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTTGCATTAACAATGAACAGTGCTTAAGGTCCGGCCCGAGGGTTA  250

seq1  TGACCTTGGGTTAGCAAGTCTACTTCCTTCTTTGATAGTTTCTAGGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGGGTTAGCAAGTCTACTTCCTTCTTTGATAGTTTCTAGGACTC  300

seq1  TCAGAAACAAGACCGCAAACCCCTGTATACAGTAGAAATACCAACTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACAAGACCGCAAACCCCTGTATACAGTAGAAATACCAACTTCTC  350

seq1  TCCCAAGCCCTTGGCCTAGGTTTTTACCTTATCTGCTGTAATCCCTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCCCTTGGCCTAGGTTTTTACCTTATCTGCTGTAATCCCTCCAT  400

seq1  GCAGGGACCGCTCTGATCACATTTACTGAGAAAAGTGGTTCCTTAGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGACCGCTCTGATCACATTTACTGAGAAAAGTGGTTCCTTAGCAAC  450

seq1  CTCCTGAGATGTAACTAAAGAAGCCACTAAAATTGTGCTTAAGTGAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGATGTAACTAAAGAAGCCACTAAAATTGTGCTTAAGTGAGACT  500

seq1  CTCTTGAGAAGCCCACACCCACGCTTGGATGTGTCTTATGTATTCCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGAAGCCCACACCCACGCTTGGATGTGTCTTATGTATTCCCTGA  550

seq1  GGTCCTCTCTGTTAACCACAATGTCTAAAACTTTGTCAAACTTTCCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCTCTGTTAACCACAATGTCTAAAACTTTGTCAAACTTTCCTTTC  600

seq1  TGATAGATTCCAGCTCTGCTTCATTCTGTCCTAAAGCTCCCTTCTGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGATTCCAGCTCTGCTTCATTCTGTCCTAAAGCTCCCTTCTGTTCA  650

seq1  GAACTCCCACTTCGCTGGGCATGGTGCCACACACCCTTAATCCCAACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCCACTTCGCTGGGCATGGTGCCACACACCCTTAATCCCAACAAT  700

seq1  CCAGAGACCGAGGCAGGCAGATCTCTGAATTTGAGGCCAGCCTGATCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACCGAGGCAGGCAGATCTCTGAATTTGAGGCCAGCCTGATCTAC  750

seq1  AGAAAGAGAATTCCAGGACAGCCAAGACTACGCCAACATGGAAAACCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAATTCCAGGACAGCCAAGACTACGCCAACATGGAAAACCACA  800

seq1  ACCCAGAAAGAATCCCTGGGTCACCCGCGTGAGCTGCTGCAGGCAGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAAGAATCCCTGGGTCACCCGCGTGAGCTGCTGCAGGCAGCAGT  850

seq1  GTGTCTTCAGCTGCAGCCCTGCCTCTGACCCGCTAGGTCATGACTTCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTCAGCTGCAGCCCTGCCTCTGACCCGCTAGGTCATGACTTCTCA  900

seq1  ACCTCTGCTCTCTCCTGGCCAATCTGGTCCTGAAGCTGAGCCCAGGCCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCTCTCTCCTGGCCAATCTGGTCCTGAAGCTGAGCCCAGGCCTC  950

seq1  TCTGCCTGCACCTTTCCCAGCCTAGTTCAGCCAGGAC-TGTCTTTTAGAC  999
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTGCCTGCACCTTTCCCAGCCTAGTTCAGCCAGGACTTGTCTTTTAGAC  1000

seq1  TTCACCTATTCATCCACTGAG-CTCCAGCTGAGCAGAGTTGGGGCTCGGC  1048
      ||||||||||||||||||||| |||||||||||||||| |||||||| ||
seq2  TTCACCTATTCATCCACTGAGCCTCCAGCTGAGCAGAG-TGGGGCTC-GC  1048

seq1  AGA-CACAGTCTGGGGATACTTCAGCCATAGGGCCTCTTCCCTCAGCTCA  1097
      ||| ||||||||||||||||||||||||||||||  ||||||||||||| 
seq2  AGACCACAGTCTGGGGATACTTCAGCCATAGGGCTCCTTCCCTCAGCTCC  1098

seq1  CATCCTCAGGGAAGGGGCTGGGTGGGAGTGGCATGCTCAGGGAATGGCAG  1147
      ||| |||||      |||  ||||||||| ||||||||||   || || |
seq2  CAT-CTCAG----TAGGCCTGGTGGGAGT-GCATGCTCAG---AT-GCCG  1138

seq1  ATGGAGAGGAACAAAGGTGGGCAGG-AGGGTGGGAGACCTGCACTAC  1193
      ||||| | ||||  | ||||||||| ||||||||| |||||| ||||
seq2  ATGGA-AAGAAC--ATGTGGGCAGGAAGGGTGGGA-ACCTGC-CTAC  1180

seq1: chr11_88790802_88790957
seq2: B6Ng01-132P16.g_104_175 (reverse)

seq1  GGGCGCACACACACACAAAGCTTTTAAAACACACACACACACACACACAC  50
      ||||||||||||||||          | ||||||||||||||||||||||
seq2  GGGCGCACACACACAC----------ACACACACACACACACACACACAC  40

seq1  ACACACACACACACACACACACACACACTCAGCTTTTAAATGTCTTAGCC  100
      ||||||||||||||||||| |||||||| |||                  
seq2  ACACACACACACACACACAAACACACACACAG------------------  72

seq1  ACCCTCCCTTTTTTTAAAGTGTCCCTGGCTACACACACACACACACACAC  150
                                                        
seq2  --------------------------------------------------  72

seq1  ACACAG  156
            
seq2  ------  72