BAC Information

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BAC

Clone NameB6Ng01-133N03
Chromosome12 (Build37)
Map Location 105,494,505 - 105,635,199
singlet/doubletdoublet
Overlap geneEG628900, EG238395, Serpina3k, EG628916, Serpina3m
Upstream geneEG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h
Downstream geneSerpina3n, Gsc, Dicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133N03.bB6Ng01-133N03.g
ACCDH934272DH934273
length5401,120
definitionDH934272|Mus musculus domesticus DNA, BAC clone: B6Ng01-133N03, 5' end.DH934273|Mus musculus domesticus DNA, BAC clone: B6Ng01-133N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,494,505 - 105,495,050)(105,634,056 - 105,635,199)
sequence
caggccttcttgtgcagttgtaggaatggagaatgttgcagcatctttgg
agaggttgatacagcaatcacactgtagacaggtactcagaggaacagga
agcaaggacatgacaggcattgctaccaccatccaccatgcttctcatag
ttggcaaagggcatgtgactcaagtcccaacagatgcatggaagagcaga
gcttgctcaggccataagttattactacattagacaaatgatggaggtga
catttcctgtttccttgtgtgtgagcctgtcaatatgctcacagggaaag
aagtcagacccagtagggcctgtgtcacgtaacccatagacatgtgatat
tcagaacaggggaattcattaatagaaagggtgttgtaatggttatatgg
agttttggggagcagagcgtgggggggtgactcatcaatgggtatgaaat
ctgtacagcaatgactaacatggcttgaaatgagacactggaaatccatc
caggcaagaatgaaatgtgggccctgtggggagggaggtt
gaattcctcttgtgcaggtttttcactaggcctagaggaatagcataatc
aggtatttactaaaggatccttggtggtgggtttaacaatagactagcat
tgcatcagagcattcacctggctcctgtgtttagctgatcctaattaggg
ttgtttttattctcatttgtaaacacagcctggctcccgctatcttttta
tgtatgtattttctttgttttgtgttaagaaccagtgtaccttgacagat
gtatttgcctagctttcttgtttttcttctgtattataagactggtgctc
actttgagaaaatatattcagatacacactcccttgtgtccatgtctttt
gtcaccctttttgttgccaattccatgcccatgtgtctggaaccctaatt
tcccattgattgagagaggccaactggggccggtctgtggcaatcattgg
tattctctgatgtgtagacatgagaacttggaaattacctgtgtcagttc
atttgggcaaaatcacaaaatgattatgtgtcacactattatttgaactg
gcgggccaagtggcagaagcaaggaagaatggacaagatgcatggatttt
cttattgagactgccgttccaccctcccaacagacacttaccaaagttaa
cgtagtataaaatggacattgtcagcatctggaaagcactgaaccatgca
agacgttctcagggaaatgcaatagtttttcggacctattctcccccacc
acagactgttactttgattccacattgggtccttcaatttagagggttca
tcaacaaggcaataattgatggacaagagaggagaaaccctcaatgccca
aggaatgagaagtaaaccctgatatctaggtcctagactgcaaagagatg
gactcagatttgggccacaagttccagaacagctcacaaatgaggtccat
ttagcagtagcccttagataccagttgcattcaggaaggatagagggata
catctgggcttgtcagcccacatggagttcacgtgtgttcagtctcagtt
atgctaaagaccaatgggagactgtggaatttgattttcaataatgagtt
ctcttcttcatctcaggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_105494505_105495050
seq2: B6Ng01-133N03.b_49_594

seq1  GAATTCCAGGCCTTCTTGTGCAGTTGTAGGAATGGAGAATGTTGCAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCTTCTTGTGCAGTTGTAGGAATGGAGAATGTTGCAGCAT  50

seq1  CTTTGGAGAGGTTGATACAGCAATCACACTGTAGACAGGTACTCAGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAGAGGTTGATACAGCAATCACACTGTAGACAGGTACTCAGAGGA  100

seq1  ACAGGAAGCAAGGACATGACAGGCATTGCTACCACCATCCACCATGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGCAAGGACATGACAGGCATTGCTACCACCATCCACCATGCTTC  150

seq1  TCATAGTTGGCAAAGGGCATGTGACTCAAGTCCCAACAGATGCATGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTTGGCAAAGGGCATGTGACTCAAGTCCCAACAGATGCATGGAAG  200

seq1  AGCAGAGCTTGCTCAGGCCATAAGTTATTACTACATTAGACAAATGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCTTGCTCAGGCCATAAGTTATTACTACATTAGACAAATGATGG  250

seq1  AGGTGACATTTCCTGTTTCCTTGTGTGTGAGCCTGTCAATATGCTCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACATTTCCTGTTTCCTTGTGTGTGAGCCTGTCAATATGCTCACAG  300

seq1  GGAAAGAAGTCAGACCCAGTAGGGCCTGTGTCACGTAACCCATAGACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAGTCAGACCCAGTAGGGCCTGTGTCACGTAACCCATAGACATG  350

seq1  TGATATTCAGAACAGGGGAATTCATTAATAGAAAGGGTGTTGTAATGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCAGAACAGGGGAATTCATTAATAGAAAGGGTGTTGTAATGGTT  400

seq1  ATATGGAGTTTTGGGGAGCAGAGCGTGGGGGGGTGACTCATCAATGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGTTTTGGGGAGCAGAGCGTGGGGGGGTGACTCATCAATGGGTA  450

seq1  TGAAATCTGTACAGCAATGACTAACATGGCTTGAAATGAGACACTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTGTACAGCAATGACTAACATGGCTTGAAATGAGACACTGGAAA  500

seq1  TCCATCCAGGCAAGAATGAAATGTGGGCCCTGTGGGGAGGGAGGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCAGGCAAGAATGAAATGTGGGCCCTGTGGGGAGGGAGGTT  546

seq1: chr12_105634056_105635199
seq2: B6Ng01-133N03.g_67_1186 (reverse)

seq1  TGGCCATGAGATGAGAGAAGAGAACTCATCTATTGAAAACATCAAATGTC  50
      ||||| |||||||| |||||||||||||| ||||||||  ||||||| ||
seq2  TGGCC-TGAGATGA-AGAAGAGAACTCAT-TATTGAAA--ATCAAAT-TC  44

seq1  CCAACAGTCTTCCCAATGTGTCTCTTAGGCATCACCCTGAGACTGGAACA  100
      |  |||||| ||||| || |||| ||| |||| |  |||||||| |||||
seq2  C--ACAGTC-TCCCATTG-GTCT-TTA-GCATAA--CTGAGACT-GAACA  85

seq1  CCACGTGCACTCCATGTGTGCTGACAAGCCCCAGATGTATCCCTCTATCC  150
       |||||| |||||||||| ||||||||| |||||||||||||||||||||
seq2  -CACGTGAACTCCATGTGGGCTGACAAG-CCCAGATGTATCCCTCTATCC  133

seq1  TTCCTGAATGCAACCTGGGTATCTAAGGGGCCTACTGCTAAATGGACCTT  200
      ||||||||||||||   ||||||||||||  ||||||||||||||||| |
seq2  TTCCTGAATGCAAC--TGGTATCTAAGGG--CTACTGCTAAATGGACC-T  178

seq1  CATTTGGTGAGCTGGTTCTGGAACTTGTGG-CCAAATCTGAGTCCATCTC  249
      ||||| ||||||| |||||||||||||||| |||||||||||||||||||
seq2  CATTT-GTGAGCT-GTTCTGGAACTTGTGGCCCAAATCTGAGTCCATCTC  226

seq1  TTTTGCAGTCTAGGACCTAGATATCAGGGTTTACTTCTCATTCCTTGGGC  299
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTGCAGTCTAGGACCTAGATATCAGGGTTTACTTCTCATTCCTTGGGC  275

seq1  ATTGAGGGTTTCTCCTCTCTTGTCCATCAATTATTGCCTTGTTGATGAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGGTTTCTCCTCTCTTGTCCATCAATTATTGCCTTGTTGATGAAC  325

seq1  CCTCTAAATTGAAGGACCCAATGTGGAATCAAAGTAACAGTCTGTGGTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAATTGAAGGACCCAATGTGGAATCAAAGTAACAGTCTGTGGTGG  375

seq1  GGGAGAATAGGTCCGAAAAACTATTGCATTTCCCTGAGAACGTCTTGCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATAGGTCCGAAAAACTATTGCATTTCCCTGAGAACGTCTTGCAT  425

seq1  GGTTCAGTGCTTTCCAGATGCTGACAATGTCCATTTTATACTACGTTAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGTGCTTTCCAGATGCTGACAATGTCCATTTTATACTACGTTAAC  475

seq1  TTTGGTAAGTGTCTGTTGGGAGGGTGGAACGGCAGTCTCAATAAGAAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAAGTGTCTGTTGGGAGGGTGGAACGGCAGTCTCAATAAGAAAAT  525

seq1  CCATGCATCTTGTCCATTCTTCCTTGCTTCTGCCACTTGGCCCGCCAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATCTTGTCCATTCTTCCTTGCTTCTGCCACTTGGCCCGCCAGTT  575

seq1  CAAATAATAGTGTGACACATAATCATTTTGTGATTTTGCCCAAATGAACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATAGTGTGACACATAATCATTTTGTGATTTTGCCCAAATGAACT  625

seq1  GACACAGGTAATTTCCAAGTTCTCATGTCTACACATCAGAGAATACCAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGTAATTTCCAAGTTCTCATGTCTACACATCAGAGAATACCAAT  675

seq1  GATTGCCACAGACCGGCCCCAGTTGGCCTCTCTCAATCAATGGGAAATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCACAGACCGGCCCCAGTTGGCCTCTCTCAATCAATGGGAAATTA  725

seq1  GGGTTCCAGACACATGGGCATGGAATTGGCAACAAAAAGGGTGACAAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCAGACACATGGGCATGGAATTGGCAACAAAAAGGGTGACAAAAG  775

seq1  ACATGGACACAAGGGAGTGTGTATCTGAATATATTTTCTCAAAGTGAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGACACAAGGGAGTGTGTATCTGAATATATTTTCTCAAAGTGAGCA  825

seq1  CCAGTCTTATAATACAGAAGAAAAACAAGAAAGCTAGGCAAATACATCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTATAATACAGAAGAAAAACAAGAAAGCTAGGCAAATACATCTG  875

seq1  TCAAGGTACACTGGTTCTTAACACAAAACAAAGAAAATACATACATAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTACACTGGTTCTTAACACAAAACAAAGAAAATACATACATAAAA  925

seq1  AGATAGCGGGAGCCAGGCTGTGTTTACAAATGAGAATAAAAACAACCCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCGGGAGCCAGGCTGTGTTTACAAATGAGAATAAAAACAACCCTA  975

seq1  ATTAGGATCAGCTAAACACAGGAGCCAGGTGAATGCTCTGATGCAATGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGATCAGCTAAACACAGGAGCCAGGTGAATGCTCTGATGCAATGCT  1025

seq1  AGTCTATTGTTAAACCCACCACCAAGGATCCTTTAGTAAATACCTGATTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATTGTTAAACCCACCACCAAGGATCCTTTAGTAAATACCTGATTA  1075

seq1  TGCTATTCCTCTAGGCCTAGTGAAAAACCTGCACAAGAGGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTCCTCTAGGCCTAGTGAAAAACCTGCACAAGAGGAATTC  1120