BAC Information

Click to search

BAC

Clone NameB6Ng01-134L17
Chromosome12 (Build37)
Map Location 74,686,616 - 74,851,677
singlet/doubletdoublet
Overlap genePrkch
Upstream geneLOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik
Downstream geneEG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134L17.bB6Ng01-134L17.g
ACCDH934955DH934956
length1,234495
definitionDH934955|Mus musculus domesticus DNA, BAC clone: B6Ng01-134L17, 5' end.DH934956|Mus musculus domesticus DNA, BAC clone: B6Ng01-134L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,850,436 - 74,851,677)(74,686,616 - 74,687,116)
sequence
gaattccaaacctcttatcatacactcattcttttaccaccggcattgcc
tggtgcccacagtacacaacctcattgggtgctgactttcaataactcca
caatgtgtcctgcagcctgaaccaaatacaatgtcatgactgaggccccc
caggatctacagtcctattcacaaggtcccatgctcatcctggtgttttt
agcctccgtctatgggaacgtctcctgagagcgagaacctgagacctgga
caagcatcaccatgagcacacagctccttctctagtggatgacaatagac
actcacaccagccctggttctcttcctcctgccccttccgacctctttct
aacagctgcacgggatgggaacgtatgaaaatgacacctctgtgagtccg
gtttctacaccttcttttaaacagaaatgaattcctacagatccagtgtt
ggtctccgttcagtcctgagagtctgacattgctgacaggcaggcaacgt
gtcaccacatttaccactgggtacacagggaaccgacttaagcttgatca
taacatggggaagtttcccccacagcatgtctcagagtaggaaaaggcaa
tcataaaaacaaatacaaaaggacatgagctttacgaacatctacagcca
cagattttcttaggatagataataaaggagccgtcaggcagacacttaag
acttataaaatgttttttagcattcgacattcctccacccccaattcccc
tagggctgaaccaacacaaatttatttagtagctctttacagtactaata
ttctgtacttgccaggaaaacctcctttttgactctctttgccaagatgc
ctctacatgacacctgcagtgtttaagttgtagatatgctcagggagatg
cagagtggcaggtcgggggctcagcagatctggaaaggtaactcaccacg
aatggcaatgggcctcctggctgctgggcctagctctaacaacatagaag
agcaggactgtttattgtgcttggcttgctagtctaagggaggatccaga
gctcccaagccccaattcctcacgctcctcttgcatggaaaggcagtgca
actgaattcacagaaaccccatttgtattggcttctaccctctggcacag
aattcagaagaaaagaaaactcttttagtaattcaaagaagaacaaacca
tgtaaaacttgggggtgcagggaattctcgagag
cctctagacttcggtcctttcccaggtggcctgcactgttgacgcgacag
ccgtgggtgtatgcgggcgcaggtgggactctgggaatccgtcctctttg
tggacctggactttgcacttaggggaagcccaatagtgatacagagttcc
atccccctcctcccggggtagggggtttgggaatcacaactctcatataa
agaaaagcagagaaagggcgatatgaaagggatatggtttgaatcaagtg
cttcaaacacttcttaggagaaagccatacattctcgcgagtattattca
tagtgtttatggatgcatgttggttcagccacacagacgtgcacacgtgt
ttcagcatgcacatccattacatcccagaggtacaaaagctacactggca
gggatcagagtgagtgcatggctttgcaccctggcagagttttgtttagc
ttttcccttggggattgggggcgagggtggaggcgggagtggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_74850436_74851677
seq2: B6Ng01-134L17.b_47_1280 (reverse)

seq1  CTCTC-AGAA-TCCCTGCA-CCCCAGGTTTTTCATTGTTTGTGTCCTGTC  47
      ||||| |||| |||||||| ||||| ||||| ||| ||||||      ||
seq2  CTCTCGAGAATTCCCTGCACCCCCAAGTTTTACATGGTTTGT------TC  44

seq1  TTTTGGGAAATTCACTGTAAGAGTTTTTCTTTCTTTCTTGAATTTCTGTG  97
      || |  |||  | |||  |||||||||  ||||||   |||| |||||| 
seq2  TTCTTTGAA--TTACTAAAAGAGTTTTCTTTTCTT--CTGAA-TTCTGT-  88

seq1  GCCAGGAGGTAG-AGCC-ATACAAATGTGGGTTTCTGTGAA-TCAGCTGC  144
      |||||  ||||| |||| ||||||||| ||||||||||||| |||| |||
seq2  GCCAGAGGGTAGAAGCCAATACAAATG-GGGTTTCTGTGAATTCAGTTGC  137

seq1  ACTTGGCTTTCCATGCAAGGAGAGCGTGAGGAATTGGGGCTTGGGAGCCT  194
      || || |||||||||||||  |||||||||||||||||||||||||| ||
seq2  AC-TGCCTTTCCATGCAAGAGGAGCGTGAGGAATTGGGGCTTGGGAG-CT  185

seq1  CTGGATCCTCCC-TAGACTAGCAAGCCCAAGCACAAT-AACAGTCCTGCT  242
      |||||||||||| |||||||||||| ||||||||||| ||||||||||||
seq2  CTGGATCCTCCCTTAGACTAGCAAG-CCAAGCACAATAAACAGTCCTGCT  234

seq1  CTTCTATGTTGTTAGAGCTAGGCCCAGCAGCCAGGAGGCCCATTGCCATT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATGTTGTTAGAGCTAGGCCCAGCAGCCAGGAGGCCCATTGCCATT  284

seq1  CGTGGTGAGTTACC-TTCCAGATCTGCCTGAGCCCCCGACCTGCCACTCT  341
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  CGTGGTGAGTTACCTTTCCAGATCTG-CTGAGCCCCCGACCTGCCACTCT  333

seq1  GCATCTCCCTGAGCATATCTACAACTTAAACACTGCAGGTGTCATGTAAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCATCTCCCTGAGCATATCTACAACTTAAACACTGCAGGTGTCATGT-AG  382

seq1  AGGCATCTTGGCAAAGAGAGTCAAAAAGGAGGTTTTCCTGGCAAGTACAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCTTGGCAAAGAGAGTCAAAAAGGAGGTTTTCCTGGCAAGTACAG  432

seq1  AATATTAGTACTGTAAAGAGCTACTAAATAAATTTGTGTTGGTTCAGCCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAGTACTGTAAAGAGCTACTAAATAAATTTGTGTTGGTTCAGCCC  482

seq1  TAGGGGAATTGGGGGTGGAGGAATGTCGAATGCT-AAAAACATTTTATAA  540
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAGGGGAATTGGGGGTGGAGGAATGTCGAATGCTAAAAAACATTTTATAA  532

seq1  GTCTTAAGTGTCTGCCTGACGGCTCCTTTATTATCTATCCTAAGAAAATC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAGTGTCTGCCTGACGGCTCCTTTATTATCTATCCTAAGAAAATC  582

seq1  TGTGGCTGTAGATGTTCGTAAAGCTCATGTCCTTTTGTATTTGTTTTTAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTGTAGATGTTCGTAAAGCTCATGTCCTTTTGTATTTGTTTTTAT  632

seq1  GATTGCCTTTTCCTACTCTGAGACATGCTGTGGGGGAAACTTCCCCATGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCTTTTCCTACTCTGAGACATGCTGTGGGGGAAACTTCCCCATGT  682

seq1  TATGATCAAGCTTAAGTCGGTTCCCTGTGTACCCAGTGGTAAATGTGGTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCAAGCTTAAGTCGGTTCCCTGTGTACCCAGTGGTAAATGTGGTG  732

seq1  ACACGTTGCCTGCCTGTCAGCAATGTCAGACTCTCAGGACTGAACGGAGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTTGCCTGCCTGTCAGCAATGTCAGACTCTCAGGACTGAACGGAGA  782

seq1  CCAACACTGGATCTGTAGGAATTCATTTCTGTTTAAAAGAAGGTGTAGAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTGGATCTGTAGGAATTCATTTCTGTTTAAAAGAAGGTGTAGAA  832

seq1  ACCGGACTCACAGAGGTGTCATTTTCATACGTTCCCATCCCGTGCAGCTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGACTCACAGAGGTGTCATTTTCATACGTTCCCATCCCGTGCAGCTG  882

seq1  TTAGAAAGAGGTCGGAAGGGGCAGGAGGAAGAGAACCAGGGCTGGTGTGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGAGGTCGGAAGGGGCAGGAGGAAGAGAACCAGGGCTGGTGTGA  932

seq1  GTGTCTATTGTCATCCACTAGAGAAGGAGCTGTGTGCTCATGGTGATGCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATTGTCATCCACTAGAGAAGGAGCTGTGTGCTCATGGTGATGCT  982

seq1  TGTCCAGGTCTCAGGTTCTCGCTCTCAGGAGACGTTCCCATAGACGGAGG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGTCTCAGGTTCTCGCTCTCAGGAGACGTTCCCATAGACGGAGG  1032

seq1  CTAAAAACACCAGGATGAGCATGGGACCTTGTGAATAGGACTGTAGATCC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACACCAGGATGAGCATGGGACCTTGTGAATAGGACTGTAGATCC  1082

seq1  TGGGGGGCCTCAGTCATGACATTGTATTTGGTTCAGGCTGCAGGACACAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGCCTCAGTCATGACATTGTATTTGGTTCAGGCTGCAGGACACAT  1132

seq1  TGTGGAGTTATTGAAAGTCAGCACCCAATGAGGTTGTGTACTGTGGGCAC  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGTTATTGAAAGTCAGCACCCAATGAGGTTGTGTACTGTGGGCAC  1182

seq1  CAGGCAATGCCGGTGGTAAAAGAATGAGTGTATGATAAGAGGTTTGGAAT  1240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATGCCGGTGGTAAAAGAATGAGTGTATGATAAGAGGTTTGGAAT  1232

seq1  TC  1242
      ||
seq2  TC  1234

seq1: chr12_74686616_74687116
seq2: B6Ng01-134L17.g_71_571

seq1  GAATTCCCTCTAGACTTCGGTCCTTTCCCAGGTGGCCTGCACTGTTGACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTAGACTTCGGTCCTTTCCCAGGTGGCCTGCACTGTTGACG  50

seq1  CGACAGCCGTGGGTGTATGCGGGCGCAGGTGGGACTCTGGGAATCCGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGCCGTGGGTGTATGCGGGCGCAGGTGGGACTCTGGGAATCCGTCC  100

seq1  TCTTTGTGGACCTGGACTTTGCACTTAGGGGAAGCCCAATAGTGATACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGGACCTGGACTTTGCACTTAGGGGAAGCCCAATAGTGATACAG  150

seq1  AGTTCCATCCCCCTCCTCCCGGGGTAGGGGGTTTGGGAATCACAACTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCATCCCCCTCCTCCCGGGGTAGGGGGTTTGGGAATCACAACTCTC  200

seq1  ATATAAAGAAAAGCAGAGAAAGGGCGATATGAAAGGGATATGGTTTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGAAAAGCAGAGAAAGGGCGATATGAAAGGGATATGGTTTGAAT  250

seq1  CAAGTGCTTCAAACACTTCTTAGGAGAAAGCCATACATTCTCGCGAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTTCAAACACTTCTTAGGAGAAAGCCATACATTCTCGCGAGTAT  300

seq1  TATTCATAGTGTTTATGGATGCATGTTGGTTCAGCCACACAGACGTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAGTGTTTATGGATGCATGTTGGTTCAGCCACACAGACGTGCAC  350

seq1  ACGTGTTTCAGCATGCACATCCATTACATCCCAGAGGTACAAAAGCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTTTCAGCATGCACATCCATTACATCCCAGAGGTACAAAAGCTACA  400

seq1  CTGGCAGGGATCAGAGTGAGTGCATGGCTTTGCACCCTGGCAGAGTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGGATCAGAGTGAGTGCATGGCTTTGCACCCTGGCAGAGTTTTG  450

seq1  TTTAGCTTTTCCCTTGGGGATTGGGGGCGAGGGTGGAGGCGGGAGTGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTTTCCCTTGGGGATTGGGGGCGAGGGTGGAGGCGGGAGTGGTG  500

seq1  G  501
      |
seq2  G  501