BAC Information

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BAC

Clone NameB6Ng01-135E05
Chromosome12 (Build37)
Map Location 54,166,206 - 54,317,512
singlet/doubletdoublet
Overlap geneAkap6
Upstream geneLOC100039627, Nubpl, Arhgap5
Downstream geneNpas3, Egln3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135E05.bB6Ng01-135E05.g
ACCDH935350DH935351
length5201,061
definitionDH935350|Mus musculus domesticus DNA, BAC clone: B6Ng01-135E05, 5' end.DH935351|Mus musculus domesticus DNA, BAC clone: B6Ng01-135E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,316,987 - 54,317,512)(54,166,206 - 54,167,269)
sequence
ttattggagactgttccatttgaaattattaccttaaaggatagaattag
ccccataaggcaatggactttttttttcttaaaaatgaaataaaaaagaa
cgtttggataaaggtgcaatgtttaggtgggagaggaagacttaaggtaa
tgtaagttgtcatatcttaatttcctcaggaggtggggcatctctgaaag
taaacacaggggattaaagatagattatggagaatatgaacaaagggggc
aagtaatagtcttgcctggagatgctagaacctacagaggttgatattta
aacagagagggagtggtgtcaatgtgtagttgactgcatgccgcattttg
attttgagaactttgctcctgaaccttagataacaatcagagacaaagaa
agaagacagtaggcaaaaaggcgcgggggtttgaggagatgctgagtaga
tcatcagtgtagttgctcacatcaaggagtccagtgcaagtgagtgaggg
gtgggggagatggggatagg
gaattccatcatgctgcctttttttctcccctcttctgatgttttattac
aacagcagaattcccagggagctttgggggcaaggttcacataatatagc
cctgaagttttgctaggtgggagctatcccccaggcctggccatcttttg
gcaatcttactatttcaagaaagaaaaaaaaaaagattctcggggtagag
tctttcacagcgttagctggatagggtttatgttttacttttttttttat
ttactagagagtgaatatctacaaccctttcatgatgctttctttcgctg
acctcaccgtgacaaggcatcttgttctttaacattgagggaggcagaaa
aatgcttgagtttctcaatgtgtgccttctataccagtttcaaaatggct
tattcttctggtttccatggtgacaattaacactgtttcaaggcattgtt
ccactctccatttgggcagaattttcggtgtgatttttaacaaaaagaga
gagagagagagagagagagagagagagagagagagaggaagaagaaaaag
ggggaaggttttaagagaaggaggaatgtctggcaaaagtgtcaaaaaag
ttatctcaatcaagcctgtatttgctactaaagtcatttatttttataaa
tccatgttttatttttactggctttgatagttcagttttagtatttgtgc
gtttaaaatgtaaattataagtaagaattccaattttaattcttagttga
aacaatgaattactattaactctgtatttcctttaacttttctttatacc
caaagaaatagcttttaggacactagtagcctgaatctttaatttagatc
attcacaaatctattaagaggattcattagaccaaattgaattggccaag
caaatacacttaataatgtaaataatgctcttggatagagtatatttaat
tttgaccagacagcacggcccacagcaggagcttgttggaaagttaatat
gggatgtttatttaccttatacttcagaaagccagctgactttaacttgg
ctattcatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_54316987_54317512
seq2: B6Ng01-135E05.b_45_570 (reverse)

seq1  CCTATCCCCATCTCCCCCACCCCTCACTCACTTGCACTGGACTCCTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCCCATCTCCCCCACCCCTCACTCACTTGCACTGGACTCCTTGAT  50

seq1  GTGAGCAACTACACTGATGATCTACTCAGCATCTCCTCAAACCCCCGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAACTACACTGATGATCTACTCAGCATCTCCTCAAACCCCCGCGC  100

seq1  CTTTTTGCCTACTGTCTTCTTTCTTTGTCTCTGATTGTTATCTAAGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCCTACTGTCTTCTTTCTTTGTCTCTGATTGTTATCTAAGGTTC  150

seq1  AGGAGCAAAGTTCTCAAAATCAAAATGCGGCATGCAGTCAACTACACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAAAGTTCTCAAAATCAAAATGCGGCATGCAGTCAACTACACATT  200

seq1  GACACCACTCCCTCTCTGTTTAAATATCAACCTCTGTAGGTTCTAGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCACTCCCTCTCTGTTTAAATATCAACCTCTGTAGGTTCTAGCATC  250

seq1  TCCAGGCAAGACTATTACTTGCCCCCTTTGTTCATATTCTCCATAATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAAGACTATTACTTGCCCCCTTTGTTCATATTCTCCATAATCTA  300

seq1  TCTTTAATCCCCTGTGTTTACTTTCAGAGATGCCCCACCTCCTGAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATCCCCTGTGTTTACTTTCAGAGATGCCCCACCTCCTGAGGAAA  350

seq1  TTAAGATATGACAACTTACATTACCTTAAGTCTTCCTCTCCCACCTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATATGACAACTTACATTACCTTAAGTCTTCCTCTCCCACCTAAAC  400

seq1  ATTGCACCTTTATCCAAACGTTCTTTTTTATTTCATTTTTAAGAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACCTTTATCCAAACGTTCTTTTTTATTTCATTTTTAAGAAAAAAA  450

seq1  AAGTCCATTGCCTTATGGGGCTAATTCTATCCTTTAAGGTAATAATTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATTGCCTTATGGGGCTAATTCTATCCTTTAAGGTAATAATTTCA  500

seq1  AATGGAACAGTCTCCAATAAGAATTC  526
      ||||||||||||||||||||||||||
seq2  AATGGAACAGTCTCCAATAAGAATTC  526

seq1: chr12_54166206_54167269
seq2: B6Ng01-135E05.g_69_1129

seq1  GAATTCCATCATGCTGCCTTTTTTTCTCCCCTCTTCTGATGTTTTATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCATGCTGCCTTTTTTTCTCCCCTCTTCTGATGTTTTATTAC  50

seq1  AACAGCAGAATTCCCAGGGAGCTTTGGGGGCAAGGTTCACATAATATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGAATTCCCAGGGAGCTTTGGGGGCAAGGTTCACATAATATAGC  100

seq1  CCTGAAGTTTTGCTAGGTGGGAGCTATCCCCCAGGCCTGGCCATCTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGTTTTGCTAGGTGGGAGCTATCCCCCAGGCCTGGCCATCTTTTG  150

seq1  GCAATCTTACTATTTCAAGAAAGAAAAAAAAAAAGATTCTCGGGGTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTTACTATTTCAAGAAAGAAAAAAAAAAAGATTCTCGGGGTAGAG  200

seq1  TCTTTCACAGCGTTAGCTGGATAGGGTTTATGTTTTACTTTTTTTTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACAGCGTTAGCTGGATAGGGTTTATGTTTTACTTTTTTTTTTAT  250

seq1  TTACTAGAGAGTGAATATCTACAACCCTTTCATGATGCTTTCTTTCGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGAGAGTGAATATCTACAACCCTTTCATGATGCTTTCTTTCGCTG  300

seq1  ACCTCACCGTGACAAGGCATCTTGTTCTTTAACATTGAGGGAGGCAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACCGTGACAAGGCATCTTGTTCTTTAACATTGAGGGAGGCAGAAA  350

seq1  AATGCTTGAGTTTCTCAATGTGTGCCTTCTATACCAGTTTCAAAATGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGAGTTTCTCAATGTGTGCCTTCTATACCAGTTTCAAAATGGCT  400

seq1  TATTCTTCTGGTTTCCATGGTGACAATTAACACTGTTTCAAGGCATTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCTGGTTTCCATGGTGACAATTAACACTGTTTCAAGGCATTGTT  450

seq1  CCACTCTCCATTTGGGCAGAATTTTCGGTGTGATTTTTAACAAAAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCCATTTGGGCAGAATTTTCGGTGTGATTTTTAACAAAAAGAGA  500

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAAGAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAAGAAAAAG  550

seq1  GGGGAAGGTTTTAAGAGAAGGAGGAATGTCTGGCAAAAGTGTCAAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGTTTTAAGAGAAGGAGGAATGTCTGGCAAAAGTGTCAAAAAAG  600

seq1  TTATCTCAATCAAGCCTGTATTTGCTACTAAAGTCATTTATTTTTATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAATCAAGCCTGTATTTGCTACTAAAGTCATTTATTTTTATAAA  650

seq1  TCCATGTTTTATTTTTACTGGCTTTGATAGTTCAGTTTTAGTATTTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTTTTATTTTTACTGGCTTTGATAGTTCAGTTTTAGTATTTGTGC  700

seq1  GTTTAAAATGTAAATTATAAGTAAGAATTCCAATTTTAATTCTTAGTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAATGTAAATTATAAGTAAGAATTCCAATTTTAATTCTTAGTTGA  750

seq1  AACAATGAATTACTATTAACTCTGTATTTCCTTTAACTTTTCTTTATACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGAATTACTATTAACTCTGTATTTCCTTTAACTTTTCTTTATACC  800

seq1  CAAAGAAATAGCTTTTAGGACACTAGTAGCCTGAATCTTTAATTTAGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAATAGCTTTTAGGACACTAGTAGCCTGAATCTTTAATTTAGATC  850

seq1  ATTCACAAATCTATTAAGAGGATTCATTAGACCAAATTGAATTGGCCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAAATCTATTAAGAGGATTCATTAGACCAAATTGAATTGGCCAAG  900

seq1  CAAATACACTTAATAATGTAAAT-ATGCTCTTTGAATAGAGTATATTTTA  949
      ||||||||||||||||||||||| |||||| ||| |||||||||| ||||
seq2  CAAATACACTTAATAATGTAAATAATGCTC-TTGGATAGAGTATA-TTTA  948

seq1  TTTTTGACCAGACAGCACGGCCCACAGCAGGAGCT--GTGGAAAGTTAAA  997
       ||||||||||||||||||||||||||||||||||   ||||||||| ||
seq2  ATTTTGACCAGACAGCACGGCCCACAGCAGGAGCTTGTTGGAAAGTT-AA  997

seq1  TATGGGATGTTTATTTACCTTAGCACTCAAGAAAGCCAGCTGACTTTAAC  1047
      ||||||||||||||||||||||  |||  |||||||||||||||||||||
seq2  TATGGGATGTTTATTTACCTTA-TACTTCAGAAAGCCAGCTGACTTTAAC  1046

seq1  TTGGCTAATCTCATCTT  1064
      |||||||   |||||||
seq2  TTGGCTA--TTCATCTT  1061