BAC Information

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BAC

Clone NameB6Ng01-135H17
Chromosome12 (Build37)
Map Location 14,235,980 - 14,237,140
singlet/doubletsinglet
Overlap genenone
Upstream geneDdx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
Downstream geneLOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135H17.g
ACCDH935506
length1,153
definitionDH935506|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagttaaccagtagaagtattaaaattggtgatatgaggccaa
ccatcataattaccaacattcatagttcacaatctcatagtgaatttatt
tgccacttagatccctatagaatacacaagtgttctcacatacaatgtga
caaatggctttttcattgaatctatgtgtgcttgtgtgtgtgcatgttcc
tgcatctgtgcatgccatcatggactgagaacactttgtcagaatctgct
ctctgcttctaccatgtaactatggagtgccgaactcagaacatcaggca
aagcaatggtggcctttatcagcttaggcatatccctggctttctattgt
cagattgttgtctcttcagttaaacccttctccccaaaaggaagattatc
aaagaaaaaaaagttcagagctaagcaaagacactatggatatagtttcc
aaacatcaagagttttgacaattgagtagtaacactatcactatttcaac
aagctgggcatgtaatttcatctaagaaattattttctagtttctactgc
tatgatatttggttggtaaattaaatgctatgccaatgtattatttacag
tcgatatgataatataaatgtgaatcaacactggacattgccatatccat
catatctcttaaaatgttctatcctgatataaacagaaagattaagtaga
gaaggcaaaattgtattgagaattcctgattggcatttaggtacaattgc
tgtcataacaataaacctgcaatctagtcatttaacattactgggcctga
aatacaactccagaaaattggaaagcgattcatgcctgactgacttacag
aatggttggaaagttcaaacgtttccatgttgaaaatcatttctaaagtg
ttctgcaactatatgactttggcagggcagttatattccagtatctcccc
acagacgtttccttaggacattgcattttgcagaccttttagagtcagaa
ctgtccatcaccgcattgattacgtctctccattcacactttattaacct
ctaatcttttgcatatatgcaagcagacagggaaagagttgaacggtaag
aaatggaacagtttaacatttccatgcttacaatgtggaagggagagggg
ata
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_14235980_14237140
seq2: B6Ng01-135H17.g_68_1220 (reverse)

seq1  TATCCCCTCTCC--TTCACATTGTTATGCATGG-AATGTTTAACTGTTCC  47
      ||||||||||||  | ||||||| || |||||| |||||| |||||||||
seq2  TATCCCCTCTCCCTTCCACATTG-TAAGCATGGAAATGTTAAACTGTTCC  49

seq1  ATTTTCTTACGGTCTACCTCTTT-CCTGTCCTGCTTGCAATTAATTATGC  96
      | |||||||| ||  | |||||| ||||| |||||||||  ||  |||||
seq2  A-TTTCTTACCGTTCAACTCTTTCCCTGT-CTGCTTGCA--TA--TATGC  93

seq1  AAAAAGATTAGA-GTTAAT-AAGTGTTGAATGGAGAGACGTAATCAATGC  144
       ||||||||||| |||||| ||||| ||||||||||||||||||||||||
seq2  -AAAAGATTAGAGGTTAATAAAGTG-TGAATGGAGAGACGTAATCAATGC  141

seq1  GGTGATTGGACAGTTCTGACTCTAAAAGGTCTGCAAAATGCAATGTCCTA  194
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGA-TGGACAGTTCTGACTCTAAAAGGTCTGCAAAATGCAATGTCCTA  190

seq1  AGGAAACGTCTGTGGGGAGATACTGGAATATTAACTGCCCTGCCAAAGTC  244
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGAAACGTCTGTGGGGAGATACTGGAATA-TAACTGCCCTGCCAAAGTC  239

seq1  ATTATAGTTTGCAGAACACTTTTAGAAATGATTTTCAACATGGAAACGTT  294
      | ||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  A-TATAG-TTGCAGAACAC-TTTAGAAATGATTTTCAACATGGAAACGTT  286

seq1  TGAACTTTCCAACCATTCTGTAAGTCAGTCAGGCATGAATCGCTTTCCAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTCCAACCATTCTGTAAGTCAGTCAGGCATGAATCGCTTTCCAA  336

seq1  TTTTCTGGAGTTGTATTTCAGGCCCAGTAATGTTAAATGACTAGATTGCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGAGTTGTATTTCAGGCCCAGTAATGTTAAATGACTAGATTGCA  386

seq1  GGTTTATTGTTATGACAGCAATTGTACCTAAATGCCAATCAGGAATTCTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATTGTTATGACAGCAATTGTACCTAAATGCCAATCAGGAATTCTC  436

seq1  AATACAATTTTGCCTTCTCTACTTAATCTTTCTGTTTATATCAGGATAGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATTTTGCCTTCTCTACTTAATCTTTCTGTTTATATCAGGATAGA  486

seq1  ACATTTTAAGAGATATGATGGATATGGCAATGTCCAGTGTTGATTCACAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAAGAGATATGATGGATATGGCAATGTCCAGTGTTGATTCACAT  536

seq1  TTATATTATCATATCGACTGTAAATAATACATTGGCATAGCATTTAATTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTATCATATCGACTGTAAATAATACATTGGCATAGCATTTAATTT  586

seq1  ACCAACCAAATATCATAGCAGTAGAAACTAGAAAATAATTTCTTAGATGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAAATATCATAGCAGTAGAAACTAGAAAATAATTTCTTAGATGA  636

seq1  AATTACATGCCCAGCTTGTTGAAATAGTGATAGTGTTACTACTCAATTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATGCCCAGCTTGTTGAAATAGTGATAGTGTTACTACTCAATTGT  686

seq1  CAAAACTCTTGATGTTTGGAAACTATATCCATAGTGTCTTTGCTTAGCTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCTTGATGTTTGGAAACTATATCCATAGTGTCTTTGCTTAGCTC  736

seq1  TGAACTTTTTTTTCTTTGATAATCTTCCTTTTGGGGAGAAGGGTTTAACT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTTTTTTCTTTGATAATCTTCCTTTTGGGGAGAAGGGTTTAACT  786

seq1  GAAGAGACAACAATCTGACAATAGAAAGCCAGGGATATGCCTAAGCTGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACAACAATCTGACAATAGAAAGCCAGGGATATGCCTAAGCTGAT  836

seq1  AAAGGCCACCATTGCTTTGCCTGATGTTCTGAGTTCGGCACTCCATAGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCACCATTGCTTTGCCTGATGTTCTGAGTTCGGCACTCCATAGTT  886

seq1  ACATGGTAGAAGCAGAGAGCAGATTCTGACAAAGTGTTCTCAGTCCATGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTAGAAGCAGAGAGCAGATTCTGACAAAGTGTTCTCAGTCCATGA  936

seq1  TGGCATGCACAGATGCAGGAACATGCACACACACAAGCACACATAGATTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGCACAGATGCAGGAACATGCACACACACAAGCACACATAGATTC  986

seq1  AATGAAAAAGCCATTTGTCACATTGTATGTGAGAACACTTGTGTATTCTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAAGCCATTTGTCACATTGTATGTGAGAACACTTGTGTATTCTA  1036

seq1  TAGGGATCTAAGTGGCAAATAAATTCACTATGAGATTGTGAACTATGAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATCTAAGTGGCAAATAAATTCACTATGAGATTGTGAACTATGAAT  1086

seq1  GTTGGTAATTATGATGGTTGGCCTCATATCACCAATTTTAATACTTCTAC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAATTATGATGGTTGGCCTCATATCACCAATTTTAATACTTCTAC  1136

seq1  TGGTTAACTGAGAATTC  1161
      |||||||||||||||||
seq2  TGGTTAACTGAGAATTC  1153