BAC Information

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BAC

Clone NameB6Ng01-135I07
Chromosome12 (Build37)
Map Location 28,980,860 - 29,117,689
singlet/doubletdoublet
Overlap genenone
Upstream geneSox11, LOC100043009, LOC669327
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135I07.bB6Ng01-135I07.g
ACCDH935533DH935534
length1,0421,012
definitionDH935533|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I07, 5' end.DH935534|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,116,640 - 29,117,689)(28,980,860 - 28,981,875)
sequence
gaattcctataggtttgaagggtggtatcaatgatctggcctgacatctg
acaagtattctcagcctgacatctgacaagtattctcagcacttatcagt
tgactgacaaaatgtcaccaagcgtttttttttctttcctgtttttatcg
ggcaatgcacaagttgaccactggatggcaatgtttccccacgaacgcat
cttctccccgcccccttcctagtgaggacaaaagcggctggaaagtggtc
caggtgctgccattctgaggagctttctcctaagtagcccatttcctcct
gggaaggggaaaacccagaagtctcacaattcagaatatttttctccttt
ctgcaatctacatgcagagcttttgtgttttctttcttttttattatttc
ctttttttttttttatctcgcctagagaaattttcattcactgtcaccaa
cagatttattttcactctgccttagaaactgaacattctgttggacgctg
gtccacaggagagcgcggtttcagacacctctgtaataggaagcgacggt
aggcactggggaggatccctacctgtggtcggtgctgtgggaggctcctg
gaagcggcagtgaaaaccctgatagtaaatgccgcccaaactgctggtta
cttctggggttttccagatgccatgtggacacccagacagtttccccatc
cttcttggagagttgctggggaattctaagtcacaatcgaaattccttaa
tgcctcagagctttcaactgaagtctgagctgatcaaatggcccaggata
cgcgttttcccctcggctcttccctttgtgctttgggcaccttaaggtag
catgaagggtcttaaagatgggttgggctgagccttgctctgactgccta
ggcttgtgcttgttctttgtggctttcatgcagtgccttggacctagaag
ggacaatctaaaggctggaggagcttgagagtttagccactcagctctat
ctgtgtgtttgtgtggtgtgcatgcatgtgatgtgcgatgtg
gaattcttaaaaaaaagtttaaactccatagaaaatgttacctctgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgatttacaagagtat
tactctataaatctcaattttaattataaagtacacatctgattcacatg
tggggggggctctgtccctttctctggatatgcagtggtttgtcagctgg
gattcattgttcactttcacagtgaagataggttacatataaaatatttt
taaattttgaagcctttattttctcatggcaaaaagtgtcacccgctctt
ttcaagagaatttcttgagaattttacaataggattgagttaaatagaaa
actgatcaagtgaggaaagccaaggaattaaggcatctgacctatccctg
gagctacccatagagagaaagcactgattgagagatggcatcttgattaa
gaacaagcaacaagatttgttataatactaagataggaacccctgtgtca
tatcctagttagaagaccaagtctccagaacaagaaaacaacacagggaa
gcatcaaatcacccaaaaagcaaacccaccagaataacatcaggtctgcc
cctcagaaactctagaactaggctgtaaagagccatgaaaagaaaataac
tgctaacccacattactattattattatttccagcaaaactattctttta
taactgaaaaaaacaataagaacttcccatgattagtacagggtgaaagg
aactataattgatgaaccagaagacacttggatgaagccaacattgaaga
aaaggccggggaaaataataaatatgtaaagatgcatttctttctctctt
ttttttaaagatactcttcaaaatgagccttaattcctgtgaactgagga
agaagactaggggatctggaccaaagccctaggtctggtggctttacttg
tacttcttacggaactttcaagcctagaagaactgggctattgtgggatt
atgtttatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_29116640_29117689
seq2: B6Ng01-135I07.b_44_1085 (reverse)

seq1  CACATTCGCACATCCACATGCATGCAACACACACACAAACACACAGAATA  50
      |||| |||||||| ||||||||||| |||| ||||||||||||||| |||
seq2  CACA-TCGCACAT-CACATGCATGC-ACAC-CACACAAACACACAG-ATA  45

seq1  GAGCTGAAGTGGCTAAACTCTCAAGCTCCTTCCAGCCTTTAGATTGTCCC  100
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGCTG-AGTGGCTAAACTCTCAAGCTCC-TCCAGCCTTTAGATTGTCCC  93

seq1  TTTCTAGGTCCCAAGGCACTGCATGAAAGCCACAAAGAACAAGCACAAGC  150
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  -TTCTAGGT-CCAAGGCACTGCATGAAAGCCACAAAGAACAAGCACAAGC  141

seq1  CTAGGCAGTCAGAGCAAGGCTCAGCCCAACCCATCTTTAAGACCCTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAGTCAGAGCAAGGCTCAGCCCAACCCATCTTTAAGACCCTTCAT  191

seq1  GCTACCTTAAGGTGCCCAAAGCACAAAGGGAAGAGCCGAGGGGAAAACGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTTAAGGTGCCCAAAGCACAAAGGGAAGAGCCGAGGGGAAAACGC  241

seq1  GTATCCTGGGCCATTTGATCAGCTCAGACTTCAGTTGAAAGCTCTGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTGGGCCATTTGATCAGCTCAGACTTCAGTTGAAAGCTCTGAGGC  291

seq1  ATTAAGGAATTTCGATTGTGACTTAGAATTCCCCAGCAACTCTCCAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGAATTTCGATTGTGACTTAGAATTCCCCAGCAACTCTCCAAGAA  341

seq1  GGATGGGGAAACTGTCTGGGTGTCCACATGGCATCTGG-AAACCCCAGAA  399
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGATGGGGAAACTGTCTGGGTGTCCACATGGCATCTGGAAAACCCCAGAA  391

seq1  GTAACCAGCAGTTTGGGCGGCATTTACTATCAGGGTTTTCACTGCCGCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCAGCAGTTTGGGCGGCATTTACTATCAGGGTTTTCACTGCCGCTT  441

seq1  CCAGGAGCCTCCCACAGCACCGACCACAGGTAGGGATCCTCCCCAGTGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCCTCCCACAGCACCGACCACAGGTAGGGATCCTCCCCAGTGCC  491

seq1  TACCGTCGCTTCCTATTACAGAGGTGTCTGAAACCGCGCTCTCCTGTGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGTCGCTTCCTATTACAGAGGTGTCTGAAACCGCGCTCTCCTGTGGA  541

seq1  CCAGCGTCCAACAGAATGTTCAGTTTCTAAGGCAGAGTGAAAATAAATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGTCCAACAGAATGTTCAGTTTCTAAGGCAGAGTGAAAATAAATCT  591

seq1  GTTGGTGACAGTGAATGAAAATTTCTCTAGGCGAGATAAAAAAAAAAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGACAGTGAATGAAAATTTCTCTAGGCGAGATAAAAAAAAAAAAA  641

seq1  GGAAATAATAAAAAAGAAAGAAAACACAAAAGCTCTGCATGTAGATTGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAATAAAAAAGAAAGAAAACACAAAAGCTCTGCATGTAGATTGCA  691

seq1  GAAAGGAGAAAAATATTCTGAATTGTGAGACTTCTGGGTTTTCCCCTTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGAAAAATATTCTGAATTGTGAGACTTCTGGGTTTTCCCCTTCC  741

seq1  CAGGAGGAAATGGGCTACTTAGGAGAAAGCTCCTCAGAATGGCAGCACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAAATGGGCTACTTAGGAGAAAGCTCCTCAGAATGGCAGCACCT  791

seq1  GGACCACTTTCCAGCCGCTTTTGTCCTCACTAGGAAGGGGGCGGGGAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACTTTCCAGCCGCTTTTGTCCTCACTAGGAAGGGGGCGGGGAGAA  841

seq1  GATGCGTTCGTGGGGAAACATTGCCATCCAGTGGTCAACTTGTGCATTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCGTTCGTGGGGAAACATTGCCATCCAGTGGTCAACTTGTGCATTGC  891

seq1  CCGATAAAAACAGGAAAGAAAAAAAAACGCTTGGTGACATTTTGTCAGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATAAAAACAGGAAAGAAAAAAAAACGCTTGGTGACATTTTGTCAGTC  941

seq1  AACTGATAAGTGCTGAGAATACTTGTCAGATGTCAGGCTGAGAATACTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATAAGTGCTGAGAATACTTGTCAGATGTCAGGCTGAGAATACTTG  991

seq1  TCAGATGTCAGGCCAGATCATTGATACCACCCTTCAAACCTATAGGAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTCAGGCCAGATCATTGATACCACCCTTCAAACCTATAGGAATT  1041

seq1  C  1050
      |
seq2  C  1042

seq1: chr12_28980860_28981875
seq2: B6Ng01-135I07.g_68_1079

seq1  GAATTCTTAAAAAAAAGTTTAAACTCCATAGAAAATGTTACCTCTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAAAAAAGTTTAAACTCCATAGAAAATGTTACCTCTGTGTG  50

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGATTTACAAGAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGATTTACAAGAGTAT  100

seq1  TACTCTATAAATCTCAATTTTAATTATAAAGTACACATCTGATTCACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTATAAATCTCAATTTTAATTATAAAGTACACATCTGATTCACATG  150

seq1  TGGGGGGGGCTCTGTCCCTTTCTCTGGATATGCAGTGGTTTGTCAGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGGCTCTGTCCCTTTCTCTGGATATGCAGTGGTTTGTCAGCTGG  200

seq1  GATTCATTGTTCACTTTCACAGTGAAGATAGGTTACATATAAAATATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTGTTCACTTTCACAGTGAAGATAGGTTACATATAAAATATTTT  250

seq1  TAAATTTTGAAGCCTTTATTTTCTCATGGCAAAAAGTGTCACCCGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTGAAGCCTTTATTTTCTCATGGCAAAAAGTGTCACCCGCTCTT  300

seq1  TTCAAGAGAATTTCTTGAGAATTTTACAATAGGATTGAGTTAAATAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAGAATTTCTTGAGAATTTTACAATAGGATTGAGTTAAATAGAAA  350

seq1  ACTGATCAAGTGAGGAAAGCCAAGGAATTAAGGCATCTGACCTATCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCAAGTGAGGAAAGCCAAGGAATTAAGGCATCTGACCTATCCCTG  400

seq1  GAGCTACCCATAGAGAGAAAGCACTGATTGAGAGATGGCATCTTGATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACCCATAGAGAGAAAGCACTGATTGAGAGATGGCATCTTGATTAA  450

seq1  GAACAAGCAACAAGATTTGTTATAATACTAAGATAGGAACCCCTGTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGCAACAAGATTTGTTATAATACTAAGATAGGAACCCCTGTGTCA  500

seq1  TATCCTAGTTAGAAGACCAAGTCTCCAGAACAAGAAAACAACACAGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAGTTAGAAGACCAAGTCTCCAGAACAAGAAAACAACACAGGGAA  550

seq1  GCATCAAATCACCCAAAAAGCAAACCCACCAGAATAACATCAGGTCTG-C  599
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCATCAAATCACCCAAAAAGCAAACCCACCAGAATAACATCAGGTCTGCC  600

seq1  CCTCAGAAACTCTAGAACTAGGCTGTTAAAGAGCCATG-AAAGAAAATAA  648
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  CCTCAGAAACTCTAGAACTAGGCTG-TAAAGAGCCATGAAAAGAAAATAA  649

seq1  CTGCTAACCCACATTACTATTATTATTATTTCCAGCAAAACTA-TCCTTT  697
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  CTGCTAACCCACATTACTATTATTATTATTTCCAGCAAAACTATTCTTTT  699

seq1  ATAACTGAAAAAAACAATAAGAACTTCCCATGATTAGTACA-GGTGAAAG  746
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATAACTGAAAAAAACAATAAGAACTTCCCATGATTAGTACAGGGTGAAAG  749

seq1  GAACTTATAATTGATGAACCAGAAGACACTTGGATGAAGCCAAACACTGA  796
      |||| |||||||||||||||||||||||||||||||||||| |||| |||
seq2  GAAC-TATAATTGATGAACCAGAAGACACTTGGATGAAGCC-AACATTGA  797

seq1  AGAAAAGGTCGTGGAAAATAATAAATATGT-AAGATGCATTTCTTTCTCT  845
      |||||||| || |||||||||||||||||| |||||||||||||||||||
seq2  AGAAAAGGCCGGGGAAAATAATAAATATGTAAAGATGCATTTCTTTCTCT  847

seq1  CTTTTTTTTAAAGATACTCTTCATAATGAGTCTTAAATCCTGTGGACTGA  895
      ||||||||||||||||||||||| |||||| ||||| ||||||| |||||
seq2  CTTTTTTTTAAAGATACTCTTCAAAATGAGCCTTAATTCCTGTGAACTGA  897

seq1  GTGAAGAAGACTAGGGGATCAGGACCAAAGCCTCAGGCTCT-GTGGCTTA  944
      | |||||||||||||||||| |||||||||||  ||| ||| ||||||| 
seq2  G-GAAGAAGACTAGGGGATCTGGACCAAAGCCCTAGG-TCTGGTGGCTTT  945

seq1  ACTTGGAGCATCCTTACTGAAGCATTCAAAGTCTAGAAAGAAACTGGCTA  994
      ||||| |   | ||||| ||| | ||| ||| |||| |||||   |||||
seq2  ACTTGTA--CTTCTTACGGAA-CTTTC-AAGCCTAG-AAGAACTGGGCTA  990

seq1  TGGTGTGTTTATGTTTATTTTA  1016
      | ||| | ||||||||||||||
seq2  TTGTGGGATTATGTTTATTTTA  1012