BAC Information

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BAC

Clone NameB6Ng01-135I14
Chromosome12 (Build37)5 (Build37)
Map Location 77,284,412 - 77,285,231119,491,196 - 119,491,359
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957
Downstream geneTex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135I14.bB6Ng01-135I14.g
ACCDH935547DH935548
length385169
definitionDH935547|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I14, 5' end.DH935548|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,284,412 - 77,285,231)(119,491,196 - 119,491,359)
sequence
tatggaaattaagatgaggcttttattgctgtcaatgttcttgttttgtt
ttgttttgtttttgggttttgttttgttttggtttggttttcttttttct
tttttggtttttcgagacagggtttctctgcattgccctggctgtcctag
aacttactctgtagaccaggctggcctcgaactcagaaatctgcctgcct
ctgcttcccacgtgctgggattatattgctgtcaatgttaaaaatttttt
ttcctgaactttgaagcagtggagaacccatttcctttctttctttcttt
ctttctttctttctttctttctttctttctttctttctttctttctttct
ttctttctctctctctctctctctctctctctctc
tgaaagtttccccctctctctccatttctcaagtgctgctgagtcttcca
aatgatctgttgtctttcctcttccaaattctccaggtgaggctcaagtc
tacacacgctttctcgagtcctaagcatggattccaggtagtcttgagtt
caccttggtctccctcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_77284412_77285231
seq2: B6Ng01-135I14.b_123_436 (reverse)

seq1  GAGAGAAAGAGAGAGAGAGAAAGAGAGAGAAAGAAAGAGAGAAAGAAAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGAAAGAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAGAAAGAGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCA  200
                                                        
seq2  --------------------------------------------------  0

seq1  CAACCATCCGTAACAAGACCTGATGCCCTCTTCTGGTGTGTCTGAAGACA  250
                                                        
seq2  --------------------------------------------------  0

seq1  GCTACAGTGTACTTACATATAATGAATAAATAAATCTTTAAAAAAAAAAG  300
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAAGAAAGAAAGAAAGAAAGGCAAGATGGCTCAGCAGGTAAGAGTACT  350
                                                        
seq2  --------------------------------------------------  0

seq1  GACTGCTGTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGG  400
                                                        
seq2  --------------------------------------------------  0

seq1  CTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTAGTGTGTCCGA-  449
                                            || | |   || 
seq2  -------------------------------------GAGAGAGAGAGAG  13

seq1  --AGATAGCTACAGTGTACTTAAGTATAATAATAAATAAATCTTTGGGGC  497
        ||| ||  | || | |   ||| | |  || ||| |||          
seq2  AGAGAGAGAGAGAGAGAAAGAAAG-AAAGAAAGAAAGAAA----------  52

seq1  TGAGCGAGTGGAGTTGACTGGAGCAAGCAGAGGTCCAAAAATTCAATTCC  547
       ||  ||  | |         || ||| | ||    ||| |         
seq2  -GAAAGAAAGAA---------AGAAAG-AAAG----AAAGA---------  78

seq1  CAACAACCACACGAAGTCTCACAACCATCTGTACAACTACA-GTGTACTC  596
       || ||  | |  |||      ||  |       ||  | | | || |||
seq2  -AAGAAAGAAAGAAAG------AAAGA-------AAGGAAATGGGTTCTC  114

seq1  ACATACATTAAA--TAAATAAATAAATATTTTTTTTTTTTAAAAAAGAAA  644
         | | | |||  | |  ||| |||         ||||||| |  || |
seq2  CACTGCTTCAAAGTTCAGGAAAAAAA--------ATTTTTAACATTGACA  156

seq1  GAAAGAGCCAGGCGTGGTGGCGCACGTCTTTAATCCCAGCACTCGGGAGG  694
      | ||                        | ||||||||||||  |||| |
seq2  GCAA------------------------TATAATCCCAGCACGTGGGAAG  182

seq1  CAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGA  744
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTAA  232

seq1  GTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAC--A  792
      |||| |||||||||||||| || ||||||||||||||||||||||||  |
seq2  GTTCTAGGACAGCCAGGGCAATGCAGAGAAACCCTGTCTCGAAAAACCAA  282

seq1  AAAACAAA----AAAACAAAAAAAAAACAAAA  820
      |||| |||    ||||| |||  |||||||||
seq2  AAAAGAAAAAAGAAAACCAAACCAAAACAAAA  314

seq1: chr5_119491196_119491359
seq2: B6Ng01-135I14.g_80_243

seq1  GTTTCCCCCTCTCTCTCCATTTCTCAAGTGCTGCTGAGTCTTCCAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCCCTCTCTCTCCATTTCTCAAGTGCTGCTGAGTCTTCCAAATGA  50

seq1  TCTGTTGTCTTTCCTCTTCCAAATTCTCCAGGTGAGGCTCAAGTCTACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTCTTTCCTCTTCCAAATTCTCCAGGTGAGGCTCAAGTCTACAC  100

seq1  ACGCTTTCTCGAGTCCTAAGCATGGATTCCAGGTAGTCTTGAGTTCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTTCTCGAGTCCTAAGCATGGATTCCAGGTAGTCTTGAGTTCACCT  150

seq1  TGGTCTCCCTCCCC  164
      ||||||||||||||
seq2  TGGTCTCCCTCCCC  164