BAC Information

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BAC

Clone NameB6Ng01-135P02
Chromosome12 (Build37)
Map Location 65,660,497 - 65,747,740
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC435302, EG623046
Downstream geneLOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135P02.bB6Ng01-135P02.g
ACCDH935854DH935855
length1,1041,100
definitionDH935854|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P02, 5' end.DH935855|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,660,497 - 65,661,615)(65,746,617 - 65,747,740)
sequence
gaattctataaagtcactaattcatctaaacagcattaatttgaaagttc
atctttatgttcatctgcaaaaaatctggtcaataaggtagactaatgtc
cagggattcttacattaataataacaggaaaggcatatcagctccaagaa
gcaatcctgaaatgaagtctctttgggactttgcttcacagagctcaccc
atcacagaccaagcacaagcagtgggccacctccagaaaggcaaactact
agatgtagcctttcctagatagctcctgacataacctcaacaaacttttg
gttcagcaagtcactcatagttagaaacatttcttttgtttcttcactgc
cttgtccatcattaatagttcatgtcttcccaagaaatgtcacatgagga
ttatggacacagagaagactagtggggaagactgaggaacactttttgat
tggcaagtttccatgggctagacttatactcacaacagcacatagcttcc
ttcatgaagaaaagctaactttaacattaggaatgtcaaatttttataaa
attaattgatggggacaaaaataatttgagagttatgaagattgattata
tattgtattccctgtctgttgtggtgttaaaggttcagttagtacagaac
ctcgacttaaaactttaaaaattcacaaaattaggagagaaacacattag
atacccttctagtgtccttaccaaaaatgcaaattaaaaattttaaagtt
acttctacttaggaaaagaaattttttacagaagaaaaacactgtaagga
aaaaaaaactgttttacattaaactggcccaatttacctttattgctcac
agtgagagctgagtcaggagaaagaaactgaagacggcaggacccagtgg
gcctcactggcaaagatatattggcactgctgcacacagtgctccgggag
gcagtgggatgtaacactgacaccagggcagaaggggtcactagagttga
cctggataagcggcagattacactgtctgtgacccctctgagaatgtttc
acatggagtacaatacatttctggagagcatgggtttctttgtcagcttg
ctgg
gaattcagtgacactctgttttcctagggacttcaacatggaaattggga
aactatgtttagaaggagttcatgattcaggtaaacaaagccaccagcct
cactcacattggcatgattttctgatttcctaagactgttggaatttcag
gacatatgttgtcatatgtaatagaaatatgacaacggaaataggagaga
gcccctttcccagcagtcatattctttgtcgatgccctatgtaactcaat
gaggtttttatgttatagtgaatcattgatactgacatggggagaacccc
gagtttatatcatttacctctataaaactgatttctgtctcaccagttct
gggtggcactattacattacagtcatgttaaaataaagattgaaatttta
acaaggtttttttctggcaacaaaaaaatagttgttcttaactttggtca
ataaaacttctttgtgcagtgggcattaatcagtcagtggagagatggat
acgccaacacgtgaagaagaagagactgagtactcagccctacacagaac
tatattccctcatccaaggcttaagaaatatggaagagaagatagaaaga
gagtaagatttaaaggatgggagatgtgctggatatgaaaatatccacat
aaggcaaacacaaactacaggtaatgggtggtagagtaactgccttctct
tttctttgtatacaaacagaatatgtgcatggtgtgtagtggggcattca
gagccatcctcaatctagaattttccccagtagtagtaactctgacaaaa
gtacatactccttttttttttaaatgaagtatgtttgttagaaggaaaag
tgcaaaacatgagtcattgtgcacattcaatgtaaaattttatcatataa
tgatgtaatctaaaatgactacatttcaaatcattgctgactttttatat
ttatatttttttgggggggtgctttcagacaaggtttctctgtatagccc
gtctgtctggaagtcactctgtagcagactgactctactcagaatcgctg
ctctgctctgatgctggaattaaggtgtgccacaaccggcttattatatt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_65660497_65661615
seq2: B6Ng01-135P02.b_48_1151

seq1  GAATTCTATAAAGTCACTAATTCATCTAAACAGCATTAATTTGAAAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAAGTCACTAATTCATCTAAACAGCATTAATTTGAAAGTTC  50

seq1  ATCTTTATGTTCATCTGCAAAAAATCTGGTCAATAAGGTAGACTAATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATGTTCATCTGCAAAAAATCTGGTCAATAAGGTAGACTAATGTC  100

seq1  CAGGGATTCTTACATTAATAATAACAGGAAAGGCATATCAGCTCCAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATTCTTACATTAATAATAACAGGAAAGGCATATCAGCTCCAAGAA  150

seq1  GCAATCCTGAAATGAAGTCTCTTTGGGACTTTGCTTCACAGAGCTCACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCTGAAATGAAGTCTCTTTGGGACTTTGCTTCACAGAGCTCACCC  200

seq1  ATCACAGACCAAGCACAAGCAGTGGGCCACCTCCAGAAAGGCAAACTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGACCAAGCACAAGCAGTGGGCCACCTCCAGAAAGGCAAACTACT  250

seq1  AGATGTAGCCTTTCCTAGATAGCTCCTGACATAACCTCAACAAACTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAGCCTTTCCTAGATAGCTCCTGACATAACCTCAACAAACTTTTG  300

seq1  GTTCAGCAAGTCACTCATAGTTAGAAACATTTCTTTTGTTTCTTCACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCAAGTCACTCATAGTTAGAAACATTTCTTTTGTTTCTTCACTGC  350

seq1  CTTGTCCATCATTAATAGTTCATGTCTTCCCAAGAAATGTCACATGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCATCATTAATAGTTCATGTCTTCCCAAGAAATGTCACATGAGGA  400

seq1  TTATGGACACAGAGAAGACTAGTGGGGAAGACTGAGGAACACTTTTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGACACAGAGAAGACTAGTGGGGAAGACTGAGGAACACTTTTTGAT  450

seq1  TGGCAAGTTTCCATGGGCTAGACTTATACTCACAACAGCACATAGCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTTTCCATGGGCTAGACTTATACTCACAACAGCACATAGCTTCC  500

seq1  TTCATGAAGAAAAGCTAACTTTAACATTAGGAATGTCAAATTTTTATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAGAAAAGCTAACTTTAACATTAGGAATGTCAAATTTTTATAAA  550

seq1  ATTAATTGATGGGGACAAAAATAATTTGAGAGTTATGAAGATTGATTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTGATGGGGACAAAAATAATTTGAGAGTTATGAAGATTGATTATA  600

seq1  TATTGTATTCCCTGTCTGTTGTGGTGTTAAAGGTTCAGTTAGTACAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATTCCCTGTCTGTTGTGGTGTTAAAGGTTCAGTTAGTACAGAAC  650

seq1  CTCGACTTAAAACTTTAAAAATTCACAAAATTAGGAGAGAAACACATTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACTTAAAACTTTAAAAATTCACAAAATTAGGAGAGAAACACATTAG  700

seq1  ATACCCTTCTAGTGTCCTTACCAAAAATGCAAATTAAAAATTTTAAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTTCTAGTGTCCTTACCAAAAATGCAAATTAAAAATTTTAAAGTT  750

seq1  ACTTCTACTTAGGAAAAGAAATTTTTTACAGAAGAAAAACACTGTAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTACTTAGGAAAAGAAATTTTTTACAGAAGAAAAACACTGTAAGGA  800

seq1  AAAAAAAACTGTTTTACATTAAACTGGCCCAATTTACCTTTATTGCTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACTGTTTTACATTAAACTGGCCCAATTTACCTTTATTGCTCAC  850

seq1  AGTGAGAGCTGAGTCAGGAGAAAGAAACTGAAGACGGCAGGACCCAGT-G  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTGAGAGCTGAGTCAGGAGAAAGAAACTGAAGACGGCAGGACCCAGTGG  900

seq1  GCCTCACTGGCAAAGATATATTGGCACTGCTGCACAACAGTGCTCCGGGA  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCCTCACTGGCAAAGATATATTGGCACTGCTGCAC-ACAGTGCTCCGGGA  949

seq1  GGCAGGTGGGATGTTAACACTGACACCAGGGCAGAAAGGGGGTCACTAAG  999
      |||| |||||||| ||||||||||||||||||||||  ||||||||| ||
seq2  GGCA-GTGGGATG-TAACACTGACACCAGGGCAGAA--GGGGTCACT-AG  994

seq1  AGTTGACCTGGATAAGCCGGCAGGAATTACACTGTTCCTGTGACCACTCT  1049
      |||||||||||||||| ||||||  ||||||||||  |||||||| ||| 
seq2  AGTTGACCTGGATAAG-CGGCAG--ATTACACTGT--CTGTGACCCCTC-  1038

seq1  TGAGAAATTGTTTCACAATGGAGTACAAATACATTTCT-GAGAGCATGGG  1098
      ||||||  |||||||| ||||||||| ||||||||||| |||||||||||
seq2  TGAGAA--TGTTTCAC-ATGGAGTAC-AATACATTTCTGGAGAGCATGGG  1084

seq1  TTTCTTTGTCAGCTTTGCTGG  1119
      ||||||||||||| |||||||
seq2  TTTCTTTGTCAGC-TTGCTGG  1104

seq1: chr12_65746617_65747740
seq2: B6Ng01-135P02.g_69_1168 (reverse)

seq1  AATA-AATAAGCCGGGTGTGGTGGCGCACACCTTTAATCCCAGCATTCAG  49
      |||| |||||||||| ||||     ||||||| ||||| |||||| ||||
seq2  AATATAATAAGCCGGTTGTG-----GCACACC-TTAATTCCAGCA-TCAG  43

seq1  GAGGCAGAGCAGGCGGATTTCTGAGTTAGAGGCCAGTCTGGCTTACAGAG  99
         |||||||| |||   ||||||| |||| | |||||||   |||||||
seq2  --AGCAGAGCA-GCG--ATTCTGAG-TAGA-GTCAGTCTG--CTACAGAG  84

seq1  TGACTTCCAGGACAGACGGGGCTATACAGAGAAACCCTGTCTCGAAAGCA  149
      ||||||||| ||||||| |||||||||||||||||| ||||| |||||| 
seq2  TGACTTCCA-GACAGAC-GGGCTATACAGAGAAACCTTGTCT-GAAAGC-  130

seq1  ACCCCCCCAAAAAAATTAATAAATATAAAAAAGTCAGCAATGATTTGATA  199
      ||||||||||||||||  |||||||| ||||||||||||||||||||| |
seq2  ACCCCCCCAAAAAAAT--ATAAATAT-AAAAAGTCAGCAATGATTTGA-A  176

seq1  TTGTAGTCATTTTAGATTACATCATTATATGATAAAATTTTTACATTGAA  249
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGTAGTCATTTTAGATTACATCATTATATGATAAAA-TTTTACATTGAA  225

seq1  TGTGCACATTGACTCATGTTTTTGCACTTTTCCTTCTAACAAACATACTT  299
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  TGTGCACAATGACTCATG-TTTTGCACTTTTCCTTCTAACAAACATACTT  274

seq1  CATTTAAAAAAAAAAGGAGTATGTACTTTTGTCAGAGTTACTACTACTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAAAAAAAAGGAGTATGTACTTTTGTCAGAGTTACTACTACTGG  324

seq1  GGAAAATTCTAGATTGAGGATGGCTCTGAATGCCCCACTACACACCATGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTCTAGATTGAGGATGGCTCTGAATGCCCCACTACACACCATGC  374

seq1  ACATATTCTGTTTGTATACAAAG-AAAGAGAAGGCAGTTACTCTACCACC  448
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACATATTCTGTTTGTATACAAAGAAAAGAGAAGGCAGTTACTCTACCACC  424

seq1  CATTACCTGTAGTTTGTGTTTGCCTTATGTGGATATTTTCATATCCAGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCTGTAGTTTGTGTTTGCCTTATGTGGATATTTTCATATCCAGCA  474

seq1  CATCTCCCATCCTTTAAATCTTACTCTCTTTCTATCTTCTCTTCCATATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCATCCTTTAAATCTTACTCTCTTTCTATCTTCTCTTCCATATT  524

seq1  TCTTAAGCCTTGGATGAGGGAATATAGTTCTGTGTAGGGCTGAGTACTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGCCTTGGATGAGGGAATATAGTTCTGTGTAGGGCTGAGTACTCA  574

seq1  GTCTCTTCTTCTTCACGTGTTGGCGTATCCATCTCTCCACTGACTGATTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTCTTCTTCACGTGTTGGCGTATCCATCTCTCCACTGACTGATTA  624

seq1  ATGCCCACTGCACAAAGAAGTTTTATTGACCAAAGTTAAGAACAACTATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCACTGCACAAAGAAGTTTTATTGACCAAAGTTAAGAACAACTATT  674

seq1  TTTTTGTTGCCAGAAAAAAACCTTGTTAAAATTTCAATCTTTATTTTAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGCCAGAAAAAAACCTTGTTAAAATTTCAATCTTTATTTTAAC  724

seq1  ATGACTGTAATGTAATAGTGCCACCCAGAACTGGTGAGACAGAAATCAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTAATGTAATAGTGCCACCCAGAACTGGTGAGACAGAAATCAGT  774

seq1  TTTATAGAGGTAAATGATATAAACTCGGGGTTCTCCCCATGTCAGTATCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGAGGTAAATGATATAAACTCGGGGTTCTCCCCATGTCAGTATCA  824

seq1  ATGATTCACTATAACATAAAAACCTCATTGAGTTACATAGGGCATCGACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCACTATAACATAAAAACCTCATTGAGTTACATAGGGCATCGACA  874

seq1  AAGAATATGACTGCTGGGAAAGGGGCTCTCTCCTATTTCCGTTGTCATAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATGACTGCTGGGAAAGGGGCTCTCTCCTATTTCCGTTGTCATAT  924

seq1  TTCTATTACATATGACAACATATGTCCTGAAATTCCAACAGTCTTAGGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTACATATGACAACATATGTCCTGAAATTCCAACAGTCTTAGGAA  974

seq1  ATCAGAAAATCATGCCAATGTGAGTGAGGCTGGTGGCTTTGTTTACCTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAATCATGCCAATGTGAGTGAGGCTGGTGGCTTTGTTTACCTGA  1024

seq1  ATCATGAACTCCTTCTAAACATAGTTTCCCAATTTCCATGTTGAAGTCCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAACTCCTTCTAAACATAGTTTCCCAATTTCCATGTTGAAGTCCC  1074

seq1  TAGGAAAACAGAGTGTCACTGAATTC  1124
      ||||||||||||||||||||||||||
seq2  TAGGAAAACAGAGTGTCACTGAATTC  1100