BAC Information

Click to search

BAC

Clone NameB6Ng01-136H11
Chromosome12 (Build37)
Map Location 45,370,946 - 45,515,751
singlet/doubletdoublet
Overlap genePnpla8, Nrcam
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062
Downstream geneEG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136H11.bB6Ng01-136H11.g
ACCDH936232DH936233
length1,1241,069
definitionDH936232|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H11, 5' end.DH936233|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,514,875 - 45,515,751)(45,370,946 - 45,372,029)
sequence
gaattcacattaaacctaatgccgtagcagctactatgttagcttgccat
tactgcaataaaattcttgaaaaatcaacttaaaggaagtgactgactca
tgaaccatccatgatcccttggcctggttggttttagccccctagtggga
cagtatatcataaaagtctacattataggaatgctgctcttctcatgtta
gccaggaagcaaagggagaaagaccaagacagagtgccaatatccccttg
aaggggatgtcgctaatgacctactttctgcaagctgaccccatttccta
aattttccattagctttcaatagcacccttccctcaggagcaagctctaa
atataggaactttcaaagggagagatttatggttcaaatcataacagtta
cagacaggaatatggaatggttgtataaatccatatttactatacactta
tatatatttttaagttcttttagataaaggaaacaagaatggagaccaga
tacccaacaaaatacatgttccttgaaaacataactgatttcaggactag
tgcagggaatatacaagatgagcctagagcatctccaagttccagaaagt
gaggaggtgctaaatgaataaacagcccacaaaatatcataaagaaaata
tgccaaaggtatacagggatccaagtgatataactccaattgacgtaaat
taaaacaacttatgaagtgagaatgaagtataattagattaaaattccaa
gtataattcgattcagaattaaacaatttatgtattcaccttatccttta
ggaggtgggacacagttccctccttctcaggagtatgcgtgtgtatgctt
gtacgcatgtattctttgtcaagtgattaagatctgtattaacagttcta
tgttgattagtttgcttttgccaatttggattaagctccagctatctgga
aaagtcattgtagagtatatggaaagaggaaatctagttgaaaactgcct
ccacaaattgactacaggcgagtctctaggaattttttttgctgatcata
agaagagtccaaaccacagttgccagaccaccactcacgtaattatagaa
gcgactgaggaaacagtcggagca
gaattcctgattgtcaaaaatatatttcaggttctcaaggcggttcatta
ccacaaggaaatgggaagaatgtttttaaaaagtgaggattattataaaa
gtacataagagtgaattgaaaagcttatgttttagtgaagcagtcagttg
taccaaattccatatagctattttgtgaaattcggtatgcatattagatg
aatctccaatataaagacctcgcttcatagtttttgctaattgttctatt
ctctatcttgttttgtatttctccatctaattttaaaatcttggtaacag
tggccctcttcataatgatgtcagattagtgaaaaggtcagctgcactag
tctatattaatacatccatactttcccatgcagaattgatacaagaacag
tctgtacttgaagttgtttttttcagccagtaaagatgggatttgttact
ttatttggggcacataacgtttgtgcaaaggtcagagctagactcttgtt
tcacctccagttccaactcactcccaatcgcttgtattttattcggttta
ctatcctttgcttttaagaggatcctttccttcagtgcttcctggtttgc
tttgagtgcttttcttcctgttcctaactttgggtaccactcaaaagttc
tatccacattgttctcctcaaaacaaatttaacttttttgaaaccaaagt
catacataaatatcctgaaatgtcaaggaaattatagggtgcatttattt
gtagctgagcattttaaaaaagaagaagcttatttttgttaagtcctggg
tatccaaatactgcaggccatctcatttggccttgagggtcagttgttat
tgtgttgcattttgtcatacataatgtagtctctctatttctatttcagt
gccctgtcattactgtcattctgtaaatttggaagaaaattaagtttctt
ctatgttaagctgacccttttccaggtcttttcatatttacagtggcatt
ttcactccatgtctgattgagaaacttaagagttttcttgacaacttctc
taacagtcctgattatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_45514875_45515751
seq2: B6Ng01-136H11.b_303_1166 (reverse)

seq1  TGCTCCGACTGGTTTCCTCAGTCTGCTTTCTTATAATTACTGTTGAGTGG  50
      |||||||||| |||||||||||| ||||   |||||||||   |||||||
seq2  TGCTCCGACT-GTTTCCTCAGTC-GCTT--CTATAATTAC--GTGAGTGG  44

seq1  TGGTTCTGGCAACTGTGGTTTGGACTCTTCTTTATGATCAGCAAAAAAAA  100
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGG-TCTGGCAACTGTGGTTTGGACTCTTC-TTATGATCAGCAAAAAAAA  92

seq1  TTCCCTAGAGACTCGCCTGTAGTCAATTTGGTGGAGGCAGTTTTTCAACT  150
      || |||||||||||||||||||||||||| |||||||||| |||||||||
seq2  TT-CCTAGAGACTCGCCTGTAGTCAATTT-GTGGAGGCAG-TTTTCAACT  139

seq1  AGATTTCCTCTTTCCATATAACTCTACAATGACTTTTTCCAGATAGCTGG  200
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  AGATTTCCTCTTTCCATAT-ACTCTACAATGAC-TTTTCCAGATAGCTGG  187

seq1  AGCTTAATCCAAATTGGCAAAAGCAAACTAATCAACATAGAACTGTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAATCCAAATTGGCAAAAGCAAACTAATCAACATAGAACTGTTAAT  237

seq1  ACAGATCTTAATCACTTGACAAAGAATACATGCGTACAAGCATACACACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCTTAATCACTTGACAAAGAATACATGCGTACAAGCATACACACG  287

seq1  CATACTCCTGAGAAGGAGGGAACTGTGTCCCACCTCCTAAAGGATAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCCTGAGAAGGAGGGAACTGTGTCCCACCTCCTAAAGGATAAGGT  337

seq1  GAATACATAAATTGTTTAATTCTGAATCGAATTATACTTGGAATTTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACATAAATTGTTTAATTCTGAATCGAATTATACTTGGAATTTTAAT  387

seq1  CTAATTATACTTCATTCTCACTTCATAAGTTGTTTTAATTTACGTCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATACTTCATTCTCACTTCATAAGTTGTTTTAATTTACGTCAATT  437

seq1  GGAGTTATATCACTTGGATCCCTGTATACCTTTGGCATATTTTCTTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTATATCACTTGGATCCCTGTATACCTTTGGCATATTTTCTTTATG  487

seq1  ATATTTTGTGGGCTGTTTATTCATTTAGCACCTCCTCACTTTCTGGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGTGGGCTGTTTATTCATTTAGCACCTCCTCACTTTCTGGAACT  537

seq1  TGGAGATGCTCTAGGCTCATCTTGTATATTCCCTGCACTAGTCCTGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATGCTCTAGGCTCATCTTGTATATTCCCTGCACTAGTCCTGAAAT  587

seq1  CAGTTATGTTTTCAAGGAACATGTATTTTGTTGGGTATCTGGTCTCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATGTTTTCAAGGAACATGTATTTTGTTGGGTATCTGGTCTCCATT  637

seq1  CTTGTTTCCTTTATCTAAAAGAACTTAAAAATATATATAAGTGTATAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCCTTTATCTAAAAGAACTTAAAAATATATATAAGTGTATAGTA  687

seq1  AATATGGATTTATACAACCATTCCATATTCCTGTCTGTAACTGTTATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGATTTATACAACCATTCCATATTCCTGTCTGTAACTGTTATGAT  737

seq1  TTGAACCATAAATCTCTCCCTTTGAAAGTTCCTATATTTAGAGCTTGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCATAAATCTCTCCCTTTGAAAGTTCCTATATTTAGAGCTTGCTC  787

seq1  CTGAGGGAAGGGTGCTATTGAAAGCTAATGGAAAATTTAGGAAATGGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGAAGGGTGCTATTGAAAGCTAATGGAAAATTTAGGAAATGGGGT  837

seq1  CAGCTTGCAGAAAGTAGGTCATTAGCG  877
      |||||||||||||||||||||||||||
seq2  CAGCTTGCAGAAAGTAGGTCATTAGCG  864

seq1: chr12_45370946_45372029
seq2: B6Ng01-136H11.g_72_1140

seq1  GAATTCCTGATTGTCAAAAATATATTTCAGGTTCTCAAGGCGGTTCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATTGTCAAAAATATATTTCAGGTTCTCAAGGCGGTTCATTA  50

seq1  CCACAAGGAAATGGGAAGAATGTTTTTAAAAAGTGAGGATTATTATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGAAATGGGAAGAATGTTTTTAAAAAGTGAGGATTATTATAAAA  100

seq1  GTACATAAGAGTGAATTGAAAAGCTTATGTTTTAGTGAAGCAGTCAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATAAGAGTGAATTGAAAAGCTTATGTTTTAGTGAAGCAGTCAGTTG  150

seq1  TACCAAATTCCATATAGCTATTTTGTGAAATTCGGTATGCATATTAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAATTCCATATAGCTATTTTGTGAAATTCGGTATGCATATTAGATG  200

seq1  AATCTCCAATATAAAGACCTCGCTTCATAGTTTTTGCTAATTGTTCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCAATATAAAGACCTCGCTTCATAGTTTTTGCTAATTGTTCTATT  250

seq1  CTCTATCTTGTTTTGTATTTCTCCATCTAATTTTAAAATCTTGGTAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTTGTTTTGTATTTCTCCATCTAATTTTAAAATCTTGGTAACAG  300

seq1  TGGCCCTCTTCATAATGATGTCAGATTAGTGAAAAGGTCAGCTGCACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTCTTCATAATGATGTCAGATTAGTGAAAAGGTCAGCTGCACTAG  350

seq1  TCTATATTAATACATCCATACTTTCCCATGCAGAATTGATACAAGAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTAATACATCCATACTTTCCCATGCAGAATTGATACAAGAACAG  400

seq1  TCTGTACTTGAAGTTGTTTTTTTCAGCCAGTAAAGATGGGATTTGTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACTTGAAGTTGTTTTTTTCAGCCAGTAAAGATGGGATTTGTTACT  450

seq1  TTATTTGGGGCACATAACGTTTGTGCAAAGGTCAGAGCTAGACTCTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGGGCACATAACGTTTGTGCAAAGGTCAGAGCTAGACTCTTGTT  500

seq1  TCACCTCCAGTTCCAACTCACTCCCAATCGCTTGTATTTTATTCGGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCCAGTTCCAACTCACTCCCAATCGCTTGTATTTTATTCGGTTTA  550

seq1  CTATCCTTTGCTTTTAAGAGGATCCTTTCCTTCAGTGCTTCCTGGTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTTTGCTTTTAAGAGGATCCTTTCCTTCAGTGCTTCCTGGTTTGC  600

seq1  -TTGAGTGCTTTTCTTCCTGTTCCTAACTTTGGGTACCACTC-AAAGTTC  648
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTGAGTGCTTTTCTTCCTGTTCCTAACTTTGGGTACCACTCAAAAGTTC  650

seq1  TATCCACATTGTTCTCCTCAAAACAAATTTAAC-TTTTTGAAACCAAAGT  697
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATCCACATTGTTCTCCTCAAAACAAATTTAACTTTTTTGAAACCAAAGT  700

seq1  CATACATAAATATCCTGAAATGTCAAGGAAATTATAGGGTGCATTTATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATAAATATCCTGAAATGTCAAGGAAATTATAGGGTGCATTTATTT  750

seq1  GTAGCTGAGCATTTTAAAAAAGAAAGAAGCTTATTTTTGTTAAGTCCTGG  797
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTAGCTGAGCATTTTAAAAAAG-AAGAAGCTTATTTTTGTTAAGTCCTGG  799

seq1  GTATCCAAATACTGCAGGCCATCTCATTTGGCCTTGAGGGTCCAGTTGTT  847
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTATCCAAATACTGCAGGCCATCTCATTTGGCCTTGAGGGT-CAGTTGTT  848

seq1  ATTGTGTTGCATTTTGTCATACATAAATGTAGTCTCTCTATTTCTATTTC  897
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTGTGTTGCATTTTGTCATACAT-AATGTAGTCTCTCTATTTCTATTTC  897

seq1  AGTGCCCTGTCATTACTG-CATTCTGTAAATATGGAAGAAAATATAGTTT  946
      |||||||||||||||||| |||||||||||| |||||||||||  |||||
seq2  AGTGCCCTGTCATTACTGTCATTCTGTAAATTTGGAAGAAAATTAAGTTT  947

seq1  CTTCTATGTTAAGCTGACCCCTTTCCAGGTC-TTTCATATTCACAAGTGG  995
      |||||||||||||||||||| |||||||||| ||||||||| || |||||
seq2  CTTCTATGTTAAGCTGACCCTTTTCCAGGTCTTTTCATATTTAC-AGTGG  996

seq1  CATTTTCACTCCATGTCTGATTTGAAAACTTAAGAGTTTTCTTGACAACT  1045
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  CATTTTCACTCCATGTCTGATTGAGAAACTTAAGAGTTTTCTTGACAACT  1046

seq1  TCTCCTTAACAAGTCCTGTTTTTTTTTTTTAATTATTTT  1084
      ||||  |||| |||||||             ||||||||
seq2  TCTC--TAAC-AGTCCTG-------------ATTATTTT  1069