BAC Information

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BAC

Clone NameB6Ng01-136P01
Chromosome12 (Build37)
Map Location 25,674,721 - 25,781,061
singlet/doubletdoublet
Overlap geneC330002I19Rik, Id2
Upstream geneLOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397
Downstream geneLOC100042973, LOC100042974, LOC668726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136P01.bB6Ng01-136P01.g
ACCDH936583DH936584
length1,1131,065
definitionDH936583|Mus musculus domesticus DNA, BAC clone: B6Ng01-136P01, 5' end.DH936584|Mus musculus domesticus DNA, BAC clone: B6Ng01-136P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,674,721 - 25,675,837)(25,780,002 - 25,781,061)
sequence
gaattcttaatgtgaattgttttttgtttttttgttttgtttttgttttt
gttttgttttgttttgttttttagacagggtttctctgtatagccctggc
tgtcctggctgtcctcactttgtagacaaggctggcctcgaactcagaaa
tccacctgcctctgcctcccaagtgctgggattaaaggcgtgcgccacca
ccgcctggcaacaggctttttatgcttcatagtgaataggaattttttag
attgtactgactgtcatatataatgctatatgaccagtgagacccagtga
gaattttaagacaataaaaattttgtatactgtctttttctcatcttcca
atgaaaaagcaagtctttgaactcaaatgttagccataattgggtaacat
ttcagaagcagagtgtgaatttcttagttaccttacctgtgcaccctcac
tctgtgtttcttgaagacatttaccaagaagccataccattttcctacat
gactatttttctgtacattgtgtacattctacattttttacttttattct
acttactaatatttcctattagctagataatcacattaaataagttaact
ctgcaaaaatatatgtattattaaggcttaacacatgttaattgtcagtt
atatagtctgagtatttgtgttttaaaatggagactggtctctaattgat
ttaaaaaccattcccttgtgttactcctcctgatatttacttagtaaatt
tgtgttgtaaatgtccatctaaagactgtcctctttcccccgtccttttg
cgtgtctgtgtatcccagcagtacagtgtctacccaatcatctgggcagc
gggcagaggccacgccgacatagtgcatcttctgctgcagaatggtgcga
aagtcaattgctctgataaggtgagttgcagagtccacgcagttctgctt
gtgctatgtataaatagtgtcatttgaaacatcttctaatgtatcttatt
ttgtatttcaacatttttacctgtgtattcacaggttaatagatggtctt
gtatttgtgttatggacatgtgttctgaatatcattaacattaaattatc
tcaaaaggacagg
cctggtatgatggacgggagcccttccaccaatggcaattcagggatgcc
cgattgagcggccagggcgagtgcacataaaagacgccccgcccggctcg
cgcttcattctgaaccgagcctggtgccgcgcagtcagctcagccccctg
tggcggctccctcccggtcttcctcctacgagcagcatgaaagccttcag
tccggtgaggtccgttaggaaaaacagcctgtcggaccacagcttgggca
tctcccggagcaaaaccccggtggacgacccgatgagtctgctctacaac
atgaacgactgctactccaagctcaaggaactggtgcccagcatccccca
gaacaagaaggtgaccaagatggaaatcctgcagcacgtcatcgattaca
tcttggacctgcagatcgccctggactcgcatcccactatcgtcagcctg
catcaccagagacctggacagaaccaggcgtccaggacgccgctgaccac
cctgaacacggacatcagcatcctgtccttgcaggtgagactagcttgca
agtacgccactgcccagacgctccgggtctcccgagctgtcactcttaaa
gcccatcgtagagacaggttcattaactttatttttgaggaaactgtata
ttgagcgtcatgtgaaatcgctacttataagttctgtgtgggttgcatct
ggatctgcgctgtagcatgatcctgtttcatgggacttgttggcactttt
gtgaaaggaggaggggggctaccttccctttaagattacctaatatcctg
ccttttatcctcttttctccccaggcatctgaattcccttctgagcttat
gtcgaatgatagcaaggtactctgtggctaaataaatggtgagtgttgcg
ggtgcctcctgtgtgcgcgtttcggtaatgtgctgagtgtctgttaaatg
tttgggtttggtaaatgcatggcttacttcactgtgttacggtgccgctt
gaacttacaacatagggcatgaaggggcttgtaagcttgtggtggctcag
gactacagacagttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_25674721_25675837
seq2: B6Ng01-136P01.b_46_1158

seq1  GAATTCTTAATGTGAATTGTTTTTTGTTTTTTTGTTTTGTTTTTGTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATGTGAATTGTTTTTTGTTTTTTTGTTTTGTTTTTGTTTTT  50

seq1  GTTTTGTTTTGTTTTGTTTTTTAGACAGGGTTTCTCTGTATAGCCCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTGTTTTTTAGACAGGGTTTCTCTGTATAGCCCTGGC  100

seq1  TGTCCTGGCTGTCCTCACTTTGTAGACAAGGCTGGCCTCGAACTCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGCTGTCCTCACTTTGTAGACAAGGCTGGCCTCGAACTCAGAAA  150

seq1  TCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCA  200

seq1  CCGCCTGGCAACAGGCTTTTTATGCTTCATAGTGAATAGGAATTTTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTGGCAACAGGCTTTTTATGCTTCATAGTGAATAGGAATTTTTTAG  250

seq1  ATTGTACTGACTGTCATATATAATGCTATATGACCAGTGAGACCCAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACTGACTGTCATATATAATGCTATATGACCAGTGAGACCCAGTGA  300

seq1  GAATTTTAAGACAATAAAAATTTTGTATACTGTCTTTTTCTCATCTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTAAGACAATAAAAATTTTGTATACTGTCTTTTTCTCATCTTCCA  350

seq1  ATGAAAAAGCAAGTCTTTGAACTCAAATGTTAGCCATAATTGGGTAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAGCAAGTCTTTGAACTCAAATGTTAGCCATAATTGGGTAACAT  400

seq1  TTCAGAAGCAGAGTGTGAATTTCTTAGTTACCTTACCTGTGCACCCTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGCAGAGTGTGAATTTCTTAGTTACCTTACCTGTGCACCCTCAC  450

seq1  TCTGTGTTTCTTGAAGACATTTACCAAGAAGCCATACCATTTTCCTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTCTTGAAGACATTTACCAAGAAGCCATACCATTTTCCTACAT  500

seq1  GACTATTTTTCTGTACATTGTGTACATTCTACATTTTTTACTTTTATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTTTCTGTACATTGTGTACATTCTACATTTTTTACTTTTATTCT  550

seq1  ACTTACTAATATTTCCTATTAGCTAGATAATCACATTAAATAAGTTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTAATATTTCCTATTAGCTAGATAATCACATTAAATAAGTTAACT  600

seq1  CTGCAAAAATATATGTATTATTAAGGCTTAACACATGTTAATTGTCAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAAATATATGTATTATTAAGGCTTAACACATGTTAATTGTCAGTT  650

seq1  ATATAGTCTGAGTATTTGTGTTTTAAAATGGAGACTGGTCTCTAATTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTCTGAGTATTTGTGTTTTAAAATGGAGACTGGTCTCTAATTGAT  700

seq1  TTAAAAACCATTCCCTTGTGTTACTCCTCCTGATATTTACTTAGTAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACCATTCCCTTGTGTTACTCCTCCTGATATTTACTTAGTAAATT  750

seq1  TGTGTTGTAAATGTCCATCTAAAGACTGTCCTC-TTCCCCCGTCCTTTTG  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTGTTGTAAATGTCCATCTAAAGACTGTCCTCTTTCCCCCGTCCTTTTG  800

seq1  CGTGTCTGTGTATCCCAGCAGTACAGTGTCTACCCAATCATCTGGGCAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCTGTGTATCCCAGCAGTACAGTGTCTACCCAATCATCTGGGCAGC  850

seq1  GGGCAGAGGCCACGCCGACATAGTGCATCTTCTGCTGCAGAATGGTGCGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGGCCACGCCGACATAGTGCATCTTCTGCTGCAGAATGGTGCGA  900

seq1  AAGTCAATTGCTCTGATAAGGTGAGTTGCAGAGTCCACGCAGGTTCTGCT  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAGTCAATTGCTCTGATAAGGTGAGTTGCAGAGTCCACGCA-GTTCTGCT  949

seq1  TGTGCTATGTTATAAATAGTGTCATTTGAAACATC-TCTAATGTATCTTA  998
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  TGTGCTATG-TATAAATAGTGTCATTTGAAACATCTTCTAATGTATCTTA  998

seq1  TTTTTGTATTTCAACATTTTTACCTGTGTATTCACAGG-TAATAGATGGG  1047
       ||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  -TTTTGTATTTCAACATTTTTACCTGTGTATTCACAGGTTAATAGAT-GG  1046

seq1  TCTTGTATTTGTGTTATGGACCATGTGTTCTTGATATTCATT-ACATTAA  1096
      |||||||||||||||||||| ||||||||||  ||| ||||| |||||||
seq2  TCTTGTATTTGTGTTATGGA-CATGTGTTCTGAATA-TCATTAACATTAA  1094

seq1  ATTATTCTCAAAAAAGACAGG  1117
      |||| |||| |||| ||||||
seq2  ATTA-TCTC-AAAAGGACAGG  1113

seq1: chr12_25780002_25781061
seq2: B6Ng01-136P01.g_76_1140 (reverse)

seq1  CAACTGTTCTGTAGTCCTGAGCAACCAC-AGC-TACAAGCCCCTTCATG-  47
      |||||| ||||||||||||||| ||||| ||| |||||||||||||||| 
seq2  CAACTG-TCTGTAGTCCTGAGCCACCACAAGCTTACAAGCCCCTTCATGC  49

seq1  CCTATGTGGTAAG-TCAAGCGGCACCCGTAACACAGTGAAGTAAG-CATG  95
      ||||||| ||||| |||||||||| |||||||||||||||||||| ||||
seq2  CCTATGTTGTAAGTTCAAGCGGCA-CCGTAACACAGTGAAGTAAGCCATG  98

seq1  CATTTACCAAA-CCAAACATTTAACAGACACACAAGCACATTACCGAAAC  144
      ||||||||||| ||||||||||||||||||| | ||||||||||||||||
seq2  CATTTACCAAACCCAAACATTTAACAGACACTC-AGCACATTACCGAAAC  147

seq1  GCGCACACAGGAGGCACCCGCAACACTCACCATTTATTTAGCCACAGAGT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACACAGGAGGCACCCGCAACACTCACCATTTATTTAGCCACAGAGT  197

seq1  ACTTTGCTATCATTCGACATAAGCTCAGAAGGGAATTCAGATGCCTGGGG  244
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCTATCATTCGACATAAGCTCAGAAGGGAATTCAGATGCCTGGGG  247

seq1  AG-AAAGAGGATAAAAGGCAGGATATTAGGTAATCTTAAA-GGAAGGTAG  292
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAAAAGAGGATAAAAGGCAGGATATTAGGTAATCTTAAAGGGAAGGTAG  297

seq1  CCCCCCTCCTCCTTTCACAAAAGTGCCAACAAGTCCCATGAAACAGGATC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTCCTCCTTTCACAAAAGTGCCAACAAGTCCCATGAAACAGGATC  347

seq1  ATGCTACAGCGCAGATCCAGATGCAACCCACACAGAACTTATAAGTAGCG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACAGCGCAGATCCAGATGCAACCCACACAGAACTTATAAGTAGCG  397

seq1  ATTTCACATGACGCTCAATATACAGTTTCCTCAAAAATAAAGTTAATGAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACATGACGCTCAATATACAGTTTCCTCAAAAATAAAGTTAATGAA  447

seq1  CCTGTCTCTACGATGGGCTTTAAGAGTGACAGCTCGGGAGACCCGGAGCG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCTACGATGGGCTTTAAGAGTGACAGCTCGGGAGACCCGGAGCG  497

seq1  TCTGGGCAGTGGCGTACTTGCAAGCTAGTCTCACCTGCAAGGACAGGATG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCAGTGGCGTACTTGCAAGCTAGTCTCACCTGCAAGGACAGGATG  547

seq1  CTGATGTCCGTGTTCAGGGTGGTCAGCGGCGTCCTGGACGCCTGGTTCTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTCCGTGTTCAGGGTGGTCAGCGGCGTCCTGGACGCCTGGTTCTG  597

seq1  TCCAGGTCTCTGGTGATGCAGGCTGACGATAGTGGGATGCGAGTCCAGGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTCTCTGGTGATGCAGGCTGACGATAGTGGGATGCGAGTCCAGGG  647

seq1  CGATCTGCAGGTCCAAGATGTAATCGATGACGTGCTGCAGGATTTCCATC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTGCAGGTCCAAGATGTAATCGATGACGTGCTGCAGGATTTCCATC  697

seq1  TTGGTCACCTTCTTGTTCTGGGGGATGCTGGGCACCAGTTCCTTGAGCTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCACCTTCTTGTTCTGGGGGATGCTGGGCACCAGTTCCTTGAGCTT  747

seq1  GGAGTAGCAGTCGTTCATGTTGTAGAGCAGACTCATCGGGTCGTCCACCG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGCAGTCGTTCATGTTGTAGAGCAGACTCATCGGGTCGTCCACCG  797

seq1  GGGTTTTGCTCCGGGAGATGCCCAAGCTGTGGTCCGACAGGCTGTTTTTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTGCTCCGGGAGATGCCCAAGCTGTGGTCCGACAGGCTGTTTTTC  847

seq1  CTAACGGACCTCACCGGACTGAAGGCTTTCATGCTGCTCGTAGGAGGAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACGGACCTCACCGGACTGAAGGCTTTCATGCTGCTCGTAGGAGGAAG  897

seq1  ACCGGGAGGGAGCCGCCACAGGGGGCTGAGCTGACTGCGCGGCACCAGGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGAGGGAGCCGCCACAGGGGGCTGAGCTGACTGCGCGGCACCAGGC  947

seq1  TCGGTTCAGAATGAAGCGCGAGCCGGGCGGGGCGTCTTTTATGTGCACTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTCAGAATGAAGCGCGAGCCGGGCGGGGCGTCTTTTATGTGCACTC  997

seq1  GCCCTGGCCGCTCAATCGGGCATCCCTGAATTGCCATTGGTGGAAGGGCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCCGCTCAATCGGGCATCCCTGAATTGCCATTGGTGGAAGGGCT  1047

seq1  CCCGTCCATCATACCAGG  1060
      ||||||||||||||||||
seq2  CCCGTCCATCATACCAGG  1065