BAC Information

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BAC

Clone NameB6Ng01-137B18
Chromosome12 (Build37)15 (Build37)
Map Location 32,631,616 - 32,631,84648,533,596 - 48,534,127
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137B18.bB6Ng01-137B18.g
ACCDH936709DH936710
length932527
definitionDH936709|Mus musculus domesticus DNA, BAC clone: B6Ng01-137B18, 5' end.DH936710|Mus musculus domesticus DNA, BAC clone: B6Ng01-137B18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,846)(48,533,596 - 48,534,127)
sequence
gaattctcagtgcccttgagaggctattacaccaccagtgtgacatccat
aaaaaaacaaaaccaaaaaaaaaaagcaacaaaaaaccccaccgactaca
aaaataattttgtaatttatacattaaaaaaaaaagtagaagaacccaga
tgtccctcaacagaggaatggatacagaaaatgtgatacatttacacaat
ggcgtactgctcagctattaaaaagaatgaatttatgaaattcctaggca
aatggatggacctggagggcatcatcctgagtgaggtaacccaatcacaa
gagaactcacatgatatgtactcactgataagtggatattagccaaaaaa
aaacttagaatacccaagatacaagatgcaatttgcaaaacacatgaaac
tcaagaagaacgaagaccaaagtgtggacactttgcctcttcttagattt
cggaacaaaacacctatggaaggagttacagaaacaaaatttggagctga
gacaaaaggatggaccatctagagactgccatacccaggtatccatccca
taatcagcctccaaacactgacaccattgcatacactagcaagattttgc
tgaaaggaccaagatagagctgtctcttgtgagactatgccagggcctag
caaacacagaagtggatgctcacagtcagctattggatggatcatagggc
tcccaatggaggggctagagaaagtacctaaggagctaaaggtgtctgca
accctataggtggaacaacaatatgaactaaccagtaccccccagagctc
gtgtctctagctgcctatgtatcagaagatggcctagtcggccatcattg
gaaagagagcccattggtcttgcaaactttatgtgcctcagtacacggga
aggccagggccaagaagtgggagtggatgggt
acggtatttgtactttattgattggcctttagtgtattagtgtgtatctc
tctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcgggggg
tgggggggcagtgctgtatcaggtccacaccggccatggcattcacatgg
tagttagaggaagacttttaaaagttagttctctggtgatcaagctcaac
ccaccaggtattcagagcaagtacttttatagctaaggcatctaattggt
tctagcttgtatatttgtaaagcatcaatataaggttgtaataaatctac
ctgtgctgtgcaatatgcaagcatgaaatttgatatcatgaaaacatttt
ggatacttattattaattaaattatagagtagttaaattgtacttctgtt
gtaaaatattgagtgtcgatataatttaaaatatgaaataactaaataca
acttatttaaggggggatggaggagctagtgtttttagcacaatacttaa
aggaaagagatctaatgataggtagcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631846
seq2: B6Ng01-137B18.b_696_972 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGCCTTCCCGTGTACTGAGGCACATAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      |||||||| ||||| ||||||||||| |||                ||||
seq2  GCAAGACCAATGGG-CTCTCTTTCCAATGATGGCCGACTAGGCCATCTTC  99

seq1  TGATACATACGCAGCTAGAGACACGAGCTC-CGGGGGTACTGGTCAGTTC  102
      ||||||||| ||||||||||||||||||||  |||||||||||| |||||
seq2  TGATACATAGGCAGCTAGAGACACGAGCTCTGGGGGGTACTGGTTAGTTC  149

seq1  ATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTA  152
      ||| ||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  ATATTGTTGTTCCACCTATAGGGTTGCAGACACCTTTAGCTCCTTAGGTA  199

seq1  CTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGA  202
      ||||||||| | |||||||||||  |||| |||||| |||||||||||||
seq2  CTTTCTCTAGCCCCTCCATTGGGAGCCCTATGATCC-ATCCAATAGCTGA  248

seq1  CTGTGAGCATCCACTTCTGTGTTTGCTAG  231
      |||||||||||||||||||||||||||||
seq2  CTGTGAGCATCCACTTCTGTGTTTGCTAG  277

seq1: chr15_48533596_48534127
seq2: B6Ng01-137B18.g_66_598

seq1  GAATTCACGGTATTTGTACTTTATTGATTGGCCTTTAGTGTATTAGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGGTATTTGTACTTTATTGATTGGCCTTTAGTGTATTAGTGTG  50

seq1  TATCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTC  100

seq1  GGGGGGTGGGGGGGCAGTGCTGTATCAGGTCCACACCGGCCATGGCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTGGGGGGGCAGTGCTGTATCAGGTCCACACCGGCCATGGCATTC  150

seq1  ACATGGTAGTTAGAGGAAGACTTTTAAAAGTTAGTTCTCTGGTGATCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTAGTTAGAGGAAGACTTTTAAAAGTTAGTTCTCTGGTGATCAAG  200

seq1  CTCAACCCACCAGGTATTCAGAGCAAGTACTTTTATAGCTAAGGCATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCCACCAGGTATTCAGAGCAAGTACTTTTATAGCTAAGGCATCTA  250

seq1  ATTGGTTCTAGCTTGTATATTTGTAAAGCATCAATATAAGGTTGTAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTCTAGCTTGTATATTTGTAAAGCATCAATATAAGGTTGTAATAA  300

seq1  ATCTACCTGTGCTGTGCAATATGCAAGCATGAAATTTGATATCATGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCTGTGCTGTGCAATATGCAAGCATGAAATTTGATATCATGAAAA  350

seq1  CATTTTGGATACTTATTATTAATTAAATTATAGAGTAGTTAAATTGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGATACTTATTATTAATTAAATTATAGAGTAGTTAAATTGTACT  400

seq1  TCTGTTGTAAAATATTGAGTGTCGATATAATTTAAAATATGAAATAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTAAAATATTGAGTGTCGATATAATTTAAAATATGAAATAACTA  450

seq1  AATACAACTTATTTAAGGGGGGATGGAGGAGCTAGTGTTTTAAGCACAAT  500
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATACAACTTATTTAAGGGGGGATGGAGGAGCTAGTGTTTTTAGCACAAT  500

seq1  ACTTAAAGGAAAGAGAGC-AATGAGAGGTAGCG  532
      |||||||||||||||| | ||||| ||||||||
seq2  ACTTAAAGGAAAGAGATCTAATGATAGGTAGCG  533