BAC Information

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BAC

Clone NameB6Ng01-138B05
Chromosome12 (Build37)
Map Location 24,659,257 - 24,782,503
singlet/doubletdoublet
Overlap geneLOC546534, 9030624G23Rik
Upstream geneLOC100043435, EG628081, LOC100042903, LOC100043440, EG668518, LOC100043445, LOC668697, LOC100042923, LOC677338, EG668701, LOC668471, LOC668703
Downstream geneEG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138B05.bB6Ng01-138B05.g
ACCDH937430DH937431
length1,0471,106
definitionDH937430|Mus musculus domesticus DNA, BAC clone: B6Ng01-138B05, 5' end.DH937431|Mus musculus domesticus DNA, BAC clone: B6Ng01-138B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,781,437 - 24,782,503)(24,659,257 - 24,660,374)
sequence
gaattcagggggttctgaggctaacggtgggattggggagcaaaagggtg
ggctcccttccagccgggaagcagtatcctcggttccactccacgccttc
tgggcaatgttgctagaggtcatggcgggtgcagggtgggagctgggcat
cgcagctcaggagggggcgcgccctcgaaccccagtacttccggaaggca
gacgcaacgcagcagcccacagccactgacaggccctgagcgctcatagc
cctcctggctgaggcctccgcttcctggcggcgcggtagcggcgggcgac
ccgattggtggtcaggtctgcgccccgccctgccgggcgggcctccgcgc
cctccccagccgggccctcccctttccgcgggaggcgtcccggacagtgg
cttggtggcgcgcagttccccttgactgtgcgcgcccgtgtctgggctct
tttgcagaggactctgtagctgcagctcccggagcacagcggatagagct
gcgggctgcgtgcgcccctgctgccaccgggcctgccgcggtggctcccg
cgccccgtggcgacttccgctcccgcgcttctttttgttcaagtcccgag
cggcggcggggtcggagcccgcgccttgggcgactgaggcggccgcagtc
cgcgcccaggcgccgtggcgatgccggacccgatctccgtgtcggaattc
gtggccgagacccttgaggactacatggcgcccacggcctctagcttcac
cacgcgcacggcccagtgccgggacaccgcggcggccatcgaggaggtga
gcggtagcgtagcccgcgccgggcgggaggctaggttcgcggggatcgcg
ctgcgccctgggcaccggtaggcttccgcgcctggtgccggataccagtg
ccctccgctgcgcccacacccgggaaaagtttctggtccccaaagccgac
gcagctgacagcagtgctcgacaagagcctttgttcctgctctagagaga
gctgcttggccactggctttttgggacgcttctgtttgttcatttcc
gaattcactctatagaacagactggcctctaactcagaaatgcacctgcc
tctgcctcccaattgtttggattaaaggaatgtgccaccactgcctggcc
agatagttgtaagccaccatgtgagtgctaggaactaaaccccattcctc
tggaggagcaacaagtgcttttaactgccaagtcatcatttctccaccct
accactatctttaaaacacactcacacgcatgcacacacatgtacaagtg
cacacatacacatgcacacacacatgcacaagtgcacacatatacatgca
cacatacacacacattttaaagtttttgtcattattgtatgtggttgttt
gcttttatgtatgtctgtgcaccacatgcatacagtgctctcagagacca
gagagggcatcacatcccctggaactggaatgacagatgattgtaaactt
ctgtgctgggcgttgaacctgctctcaacctctgaatcatccccccttta
aaaggtgttcttccactgagctatgccctagatgttctcatgtctacacc
acgagtctttgctctagtgttcatgatccctttatccatgttttgtgttt
gtttctgcaaagaaagaaaataccttaggaagctcatccttgggcccaga
cacttgtgtttgttcttattttttgagacagggtcaactttgtagcctgg
atagcctggaattttcctgtagaccaggctggcctcaaattcacagagat
ttgcctgcctatacattcctgagttctgggattaaaagtaagtgccacca
tgcccagtttaggcctcaacatttgaaaatgtgtgttttctggatcacct
tatggctgacttagaaaacgaatgacaagcacatctatcctcagcttatt
taacagaacagcacacaaagactgtttattttgtcattttaataagtctg
tagactctctgtgctgaaataacgtagtcagtcctagaaaagagctaaac
tagggtctgtggcagctagtcaggggagctcttgctaccagtcagaaagc
tgggtttgggactgttgtggtggagaaattactacatggtggagtcctgt
gcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_24781437_24782503
seq2: B6Ng01-138B05.b_45_1091 (reverse)

seq1  GGAAATGGGAACAGACAGGAGCGTTCCCAAAAAAGGCCCAAGGTGGCCAA  50
      ||||||  ||||| |||| |||| |||||||||  |||    ||||||||
seq2  GGAAAT--GAACAAACAGAAGCG-TCCCAAAAA--GCC---AGTGGCCAA  42

seq1  GCAGCCTCTCTCTAGAGCAGGGAACAAAGGGCTTCTGTGTCGAGCACTGC  100
      |||| |||||||||||||| ||||||||||   ||| |||||||||||||
seq2  GCAG-CTCTCTCTAGAGCA-GGAACAAAGG--CTCT-TGTCGAGCACTGC  87

seq1  TGGTCCGGCTGCGTCCGGCTTTGGGGGACCAGAAACTTTTCCCGGGTGTG  150
      ||   | ||||||| ||||||| |||||||||||||||||||||||||||
seq2  TG--TCAGCTGCGT-CGGCTTT-GGGGACCAGAAACTTTTCCCGGGTGTG  133

seq1  GGCGCAGCCGGAGGGCACTGGGTATCCGGCACCAGGCGCGGAAGCCTACC  200
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  GGCGCAG-CGGAGGGCACT-GGTATCCGGCACCAGGCGCGGAAGCCTACC  181

seq1  GGGTGCCCAGGGCGCAGCGCGATCCCCGCGAACCTAGCCTCCCGCCCGGC  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGTGCCCAGGGCGCAGCGCGATCCCCGCGAACCTAGCCTCCCGCCCGGC  230

seq1  GCGGGCTACGCTACCGCTCACCTCCTCGATGGCCGCCGCGGTGTCCCGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCTACGCTACCGCTCACCTCCTCGATGGCCGCCGCGGTGTCCCGGC  280

seq1  ACTGGGCCGTGCGCGTGGTGAAGCTAGAGGCCGTGGGCGCCATGTAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCCGTGCGCGTGGTGAAGCTAGAGGCCGTGGGCGCCATGTAGTCC  330

seq1  TCAAGGGTCTCGGCCACGAATTCCGACACGGAGATCGGGTCCGGCATCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGTCTCGGCCACGAATTCCGACACGGAGATCGGGTCCGGCATCGC  380

seq1  CACGGCGCCTGGGCGCGGACTGCGGCCGCCTCAGTCGCCCAAGGCGCGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCGCCTGGGCGCGGACTGCGGCCGCCTCAGTCGCCCAAGGCGCGGG  430

seq1  CTCCGACCCCGCCGCCGCTCGGGACTTGAACAAAAAGAAGCGCGGGAGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGACCCCGCCGCCGCTCGGGACTTGAACAAAAAGAAGCGCGGGAGCG  480

seq1  GAAGTCGCCACGGGGCGCGGGAGCCACCGCGGCAGGCCCGGTGGCAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCGCCACGGGGCGCGGGAGCCACCGCGGCAGGCCCGGTGGCAGCAG  530

seq1  GGGCGCACGCAGCCCGCAGCTCTATCCGCTGTGCTCCGGGAGCTGCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGCACGCAGCCCGCAGCTCTATCCGCTGTGCTCCGGGAGCTGCAGCT  580

seq1  ACAGAGTCCTCTGCAAAAGAGCCCAGACACGGGCGCGCACAGTCAAGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCCTCTGCAAAAGAGCCCAGACACGGGCGCGCACAGTCAAGGGG  630

seq1  AACTGCGCGCCACCAAGCCACTGTCCGGGACGCCTCCCGCGGAAAGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCGCGCCACCAAGCCACTGTCCGGGACGCCTCCCGCGGAAAGGGGA  680

seq1  GGGCCCGGCTGGGGAGGGCGCGGAGGCCCGCCCGGCAGGGCGGGGCGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCGGCTGGGGAGGGCGCGGAGGCCCGCCCGGCAGGGCGGGGCGCAG  730

seq1  ACCTGACCACCAATCGGGTCGCCCGCCGCTACCGCGCCGCCAGGAAGCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACCACCAATCGGGTCGCCCGCCGCTACCGCGCCGCCAGGAAGCGG  780

seq1  AGGCCTCAGCCAGGAGGGCTATGAGCGCTCAGGGCCTGTCAGTGGCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCAGCCAGGAGGGCTATGAGCGCTCAGGGCCTGTCAGTGGCTGTG  830

seq1  GGCTGCTGCGTTGCGTCTGCCTTCCGGAAGTACTGGGGTTCGAGGGCGCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGCGTTGCGTCTGCCTTCCGGAAGTACTGGGGTTCGAGGGCGCG  880

seq1  CCCCCTCCTGAGCTGCGATGCCCAGCTCCCACCCTGCACCCGCCATGACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCTGAGCTGCGATGCCCAGCTCCCACCCTGCACCCGCCATGACC  930

seq1  TCTAGCAACATTGCCCAGAAGGCGTGGAGTGGAACCGAGGATACTGCTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAACATTGCCCAGAAGGCGTGGAGTGGAACCGAGGATACTGCTTC  980

seq1  CCGGCTGGAAGGGAGCCCACCCTTTTGCTCCCCAATCCCACCGTTAGCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTGGAAGGGAGCCCACCCTTTTGCTCCCCAATCCCACCGTTAGCCT  1030

seq1  CAGAACCCCCTGAATTC  1067
      |||||||||||||||||
seq2  CAGAACCCCCTGAATTC  1047

seq1: chr12_24659257_24660374
seq2: B6Ng01-138B05.g_69_1174

seq1  GAATTCACTCTATAGAACAGACTGGCCTCTAACTCAGAAATGCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTATAGAACAGACTGGCCTCTAACTCAGAAATGCACCTGCC  50

seq1  TCTGCCTCCCAATTGTTTGGATTAAAGGAATGTGCCACCACTGCCTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAATTGTTTGGATTAAAGGAATGTGCCACCACTGCCTGGCC  100

seq1  AGATAGTTGTAAGCCACCATGTGAGTGCTAGGAACTAAACCCCATTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTTGTAAGCCACCATGTGAGTGCTAGGAACTAAACCCCATTCCTC  150

seq1  TGGAGGAGCAACAAGTGCTTTTAACTGCCAAGTCATCATTTCTCCACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGCAACAAGTGCTTTTAACTGCCAAGTCATCATTTCTCCACCCT  200

seq1  ACCACTATCTTTAAAACACACTCACACGCATGCACACACATGTACAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTATCTTTAAAACACACTCACACGCATGCACACACATGTACAAGTG  250

seq1  CACACATACACATGCACACACACATGCACAAGTGCACACATATACATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACACATGCACACACACATGCACAAGTGCACACATATACATGCA  300

seq1  CACATACACACACATTTTAAAGTTTTTGTCATTATTGTATGTGGTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACACATTTTAAAGTTTTTGTCATTATTGTATGTGGTTGTTT  350

seq1  GCTTTTATGTATGTCTGTGCACCACATGCATACAGTGCTCTCAGAGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATGTATGTCTGTGCACCACATGCATACAGTGCTCTCAGAGACCA  400

seq1  GAGAGGGCATCACATCCCCTGGAACTGGAATGACAGATGATTGTAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGCATCACATCCCCTGGAACTGGAATGACAGATGATTGTAAACTT  450

seq1  CTGTGCTGGGCGTTGAACCTGCTCTCAACCTCTGAATCATCCCCCCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGGGCGTTGAACCTGCTCTCAACCTCTGAATCATCCCCCCTTTA  500

seq1  AAAGGTGTTCTTCCACTGAGCTATGCCCTAGATGTTCTCATGTCTACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTTCTTCCACTGAGCTATGCCCTAGATGTTCTCATGTCTACACC  550

seq1  ACGAGTCTTTGCTCTAGTGTTCATGATCCCTTTATCCATGTTTTGTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTCTTTGCTCTAGTGTTCATGATCCCTTTATCCATGTTTTGTGTTT  600

seq1  GTTTCTGCAAAGAAAGAAAATACCTTAGGAAGCTCATCCTTGGGCCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCAAAGAAAGAAAATACCTTAGGAAGCTCATCCTTGGGCCCAGA  650

seq1  CACTTGTGTTTGTTCTTATTTTTTGAGACAGGGTCAACTTTGTAGCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTGTTTGTTCTTATTTTTTGAGACAGGGTCAACTTTGTAGCCTGG  700

seq1  ATAGCCTGGAATTTTCCTGTAGACCAGGCTGGCCTCAAATTCACAGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTGGAATTTTCCTGTAGACCAGGCTGGCCTCAAATTCACAGAGAT  750

seq1  TTGCCTGCCTATACATTCCTGAGTTCTGGGATTAAAAGTAAGTGCCACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGCCTATACATTCCTGAGTTCTGGGATTAAAAGTAAGTGCCACCA  800

seq1  TGCCCAGTTTAGGCCTCAACATTTGAAAATGTGTGTTTTCTGGATCACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGTTTAGGCCTCAACATTTGAAAATGTGTGTTTTCTGGATCACCT  850

seq1  TATGGCTGACTTTAGAAAACGAATGACAAGCACATCTATCCTCAGCTTAT  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTGAC-TTAGAAAACGAATGACAAGCACATCTATCCTCAGCTTAT  899

seq1  TTAACAGAACAGCACACAAAGACTGTTTATTTTGTCATTTTAATAAAGTC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTAACAGAACAGCACACAAAGACTGTTTATTTTGTCATTTTAAT-AAGTC  948

seq1  TGTAGACTCTCTGTGCTGAAATAACGTAGTCAGTCCTAGATAAAGGAGCC  1000
      |||||||||||||||||||||||||||||||||||||||  ||| |||| 
seq2  TGTAGACTCTCTGTGCTGAAATAACGTAGTCAGTCCTAG--AAAAGAGC-  995

seq1  TTAAACTAGGGTCTGTGGCAGCTAGTCAGGTGAGCTC-TGCTACCCAGTC  1049
       ||||||||||||||||||||||||||||| |||||| ||||| ||||||
seq2  -TAAACTAGGGTCTGTGGCAGCTAGTCAGGGGAGCTCTTGCTA-CCAGTC  1043

seq1  AGGAAAGCTGGGTTTGGGAACTTGTGTGTGTGGTAGAAA-TACTACATGG  1098
      | |||||||||||||||| |||  |||| |||| ||||| ||||||||||
seq2  A-GAAAGCTGGGTTTGGG-ACTGTTGTG-GTGG-AGAAATTACTACATGG  1089

seq1  TGGTATGTCACTGTGCATCT  1118
      |||   ||| ||||||||||
seq2  TGG--AGTC-CTGTGCATCT  1106