BAC Information

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BAC

Clone NameB6Ng01-139A08
Chromosome12 (Build37)
Map Location 9,764,275 - 9,870,699
singlet/doubletdoublet
Overlap genenone
Upstream geneF730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238, Osr1
Downstream geneLOC382567, Nt5c1b, Rdh14, LOC238074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139A08.bB6Ng01-139A08.g
ACCDH938112DH938113
length1,172851
definitionDH938112|Mus musculus domesticus DNA, BAC clone: B6Ng01-139A08, 5' end.DH938113|Mus musculus domesticus DNA, BAC clone: B6Ng01-139A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,869,498 - 9,870,699)(9,764,275 - 9,765,125)
sequence
gaattccaaggacacataggatttaccacctctaacagtcagaggataat
ggaaatctttgggcgtttcatgtttcggtgtataataagaagaaagagcc
cagtcagttagcacatgtccctttagagggagtgtgtttctacctcacag
ttcttacaaatgtgtagtttttacaagatattatttttgtaaatttccca
ggggcaaaaaggtgattcaaataccacatatcaaagaaatttctatctac
ctaaggagagtaggtgaatactttcaaattatcaccaaaatactaagtac
ccaggggatgcaagtaatggatgttgtagatcctggtttaagcaacctgt
gaaaacaagttaatttgttctatagagattaaggaacatgctagatgaac
tacagtgtttctgtttgcaaggacttgagaaggtggttctggatctattt
ggtttgtgtttttcatgaaggcactatggattttatactcagtaagcttt
tgtgttttgttgactcctagcaagtgtagagccttttctcatcatctaca
gaaaattcatcaaacttgagacatatattttatgttggattctttcctac
tctctatgttcttagatttctcttgattgattttattactatctctaata
gatggtatattactattttatcatatacctataagttgatgcaaatttgt
ttggagtagagcagtaaaataatagaaaaaatttataaggaaaaagaagc
aacaaaatacttggtaatcactatggcatggccactgaccatgaacaatc
cattaataacaaaatgtcacactggaccattcaagctaaatgtcatccgt
gctcataataagctcaatattgaaagttggattagagtcaaagcaataga
tttgaactcagaagacccaggaaagcacaaatttcacagaccaaagtaca
ggaccaaagtcaaatgagcctagctgacattttggctctttttcccatga
actttctaatttcagttttctcatgtgcagaaaaaatatgatgttttcta
gcctcacaagctgtactagattggtgagttttgatgaaataatatatact
gttcgatgtaggaatcacactggggatttttgtctttcgagaagttctca
tgagttcacacatttattcagt

gaattctcctcttgcctcaatacattctttttaaggtacaaataaaaaac
tgatctctgcatatatgcacatgcatgaatgtaccatgccattctctttg
cttggaacttaattttaaaatttcgatggcaaagattttctgtagcaatt
ttttcatttgaaaaaagaaacaacagtacagccattgataaataagaaaa
accaatattaggaggaggtaagaatattagtaatagcattaactatatca
tattaaacttgattccataaattatttttaaatctcatgactcaaaatgt
gaaaatgcataggttcatcactttgttcttttctctattgggttgacatg
tatatgtctgtgtttggcatttttaatcttgagccatttaattgttagct
tataagtttttacttaatcagaaagaaaaatatctttgtgatgaggtggc
ataaaaatcccttactacacagaaagccagccttaaataattctttgaaa
tagaactgacctccatggactagaacgaaggcagtaaggaaacagaatgt
tccctgaaacagaacccagaagccaaaactcgtgattccctcaagggttg
aaaatatttccccctgaattaacttatacttgtgtttctgccactatgtt
ttttttgcagtgaacatttgataaagatggtcattgttcagtttccaggt
ggtctgcaagacctggatgctacccatgatcctgagcaggaagtctttga
taaatctagatgcaatttccctaatgatgctattgatgcctgctacaagt
tgacttatgcatcttctgaagatgtgtgtgtgtgtgtgtgtgtgtgtgtg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_9869498_9870699
seq2: B6Ng01-139A08.b_49_1220 (reverse)

seq1  ACTGAAATAAAATGGTGTG-ACTCATTGAGAAACTTCTCTGAAAGGACCA  49
      |||| ||||||   ||||| ||||| |||| |||||||| |||| |||  
seq2  ACTG-AATAAA--TGTGTGAACTCA-TGAG-AACTTCTC-GAAA-GAC--  41

seq1  AATAATCCCCAGGTTGTGATTCTCTACATCAGAACAGTAATATATTATTT  99
      || |||||||||  |||||||| ||||||| ||||||| |||||||||||
seq2  AAAAATCCCCAG--TGTGATTC-CTACATC-GAACAGT-ATATATTATTT  86

seq1  TCCATTCCAAAAACTCACCAATCTTTATGTACCAGCTTTGTGAGGCTAGA  149
        |||    |||||||||||||||    ||| |||| |||||||||||||
seq2  --CAT---CAAAACTCACCAATCT---AGTA-CAGC-TTGTGAGGCTAGA  126

seq1  AAACATCATATTTTTTTCTTGCACATGAGAAAACTGAAATTAGAAAGTTC  199
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  AAACATCATATTTTTT--CTGCACATGAGAAAACTGAAATTAGAAAGTTC  174

seq1  ATGGGGAAAAAGAGCCAAAATTGTCAGCTAGGCTCATTTGACTTTTGGTC  249
      || ||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  AT-GGGAAAAAGAGCCAAAA-TGTCAGCTAGGCTCATTTGAC-TTTGGTC  221

seq1  CTGTACTTTGGTTCTGTGAAATTTGTGCTTTCCTGGGTCTTCTGAGTTCA  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTTGG-TCTGTGAAATTTGTGCTTTCCTGGGTCTTCTGAGTTCA  270

seq1  AATCTATTGCTTTGACTCTTAATCCAACTTTCAATATTGAGCTTATTATG  349
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATCTATTGCTTTGACTC-TAATCCAACTTTCAATATTGAGCTTATTATG  319

seq1  AGCACGGATGACATTTAGCTTGAATGGTCCAGTGTGACATTTTGTTATTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGATGACATTTAGCTTGAATGGTCCAGTGTGACATTTTGTTATTA  369

seq1  ATGGATTGTTCATGGTCAGTGGCCATGCCATAGTGATTACCAAGTATTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTGTTCATGGTCAGTGGCCATGCCATAGTGATTACCAAGTATTTT  419

seq1  GTTGCTTCTTTTTCCTTATAAATTTTTTCTATTATTTTACTGCTCTACTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTCTTTTTCCTTATAAATTTTTTCTATTATTTTACTGCTCTACTC  469

seq1  CAAACAAATTTGCATCAACTTATAGGTATATGATAAAATAGTAATATACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAATTTGCATCAACTTATAGGTATATGATAAAATAGTAATATACC  519

seq1  ATCTATTAGAGATAGTAATAAAATCAATCAAGAGAAATCTAAGAACATAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTAGAGATAGTAATAAAATCAATCAAGAGAAATCTAAGAACATAG  569

seq1  AGAGTAGGAAAGAATCCAACATAAAATATATGTCTCAAGTTTGATGAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGAAAGAATCCAACATAAAATATATGTCTCAAGTTTGATGAATT  619

seq1  TTCTGTAGATGATGAGAAAAGGCTCTACACTTGCTAGGAGTCAACAAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGATGATGAGAAAAGGCTCTACACTTGCTAGGAGTCAACAAAAC  669

seq1  ACAAAAGCTTACTGAGTATAAAATCCATAGTGCCTTCATGAAAAACACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCTTACTGAGTATAAAATCCATAGTGCCTTCATGAAAAACACAA  719

seq1  ACCAAATAGATCCAGAACCACCTTCTCAAGTCCTTGCAAACAGAAACACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATAGATCCAGAACCACCTTCTCAAGTCCTTGCAAACAGAAACACT  769

seq1  GTAGTTCATCTAGCATGTTCCTTAATCTCTATAGAACAAATTAACTTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCATCTAGCATGTTCCTTAATCTCTATAGAACAAATTAACTTGTT  819

seq1  TTCACAGGTTGCTTAAACCAGGATCTACAACATCCATTACTTGCATCCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGTTGCTTAAACCAGGATCTACAACATCCATTACTTGCATCCCC  869

seq1  TGGGTACTTAGTATTTTGGTGATAATTTGAAAGTATTCACCTACTCTCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACTTAGTATTTTGGTGATAATTTGAAAGTATTCACCTACTCTCCT  919

seq1  TAGGTAGATAGAAATTTCTTTGATATGTGGTATTTGAATCACCTTTTTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGATAGAAATTTCTTTGATATGTGGTATTTGAATCACCTTTTTGC  969

seq1  CCCTGGGAAATTTACAAAAATAATATCTTGTAAAAACTACACATTTGTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGAAATTTACAAAAATAATATCTTGTAAAAACTACACATTTGTAA  1019

seq1  GAACTGTGAGGTAGAAACACACTCCCTCTAAAGGGACATGTGCTAACTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTGAGGTAGAAACACACTCCCTCTAAAGGGACATGTGCTAACTGA  1069

seq1  CTGGGCTCTTTCTTCTTATTATACACCGAAACATGAAACGCCCAAAGATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCTTTCTTCTTATTATACACCGAAACATGAAACGCCCAAAGATT  1119

seq1  TCCATTATCCTCTGACTGTTAGAGGTGGTAAATCCTATGTGTCCTTGGAA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATCCTCTGACTGTTAGAGGTGGTAAATCCTATGTGTCCTTGGAA  1169

seq1  TTC  1202
      |||
seq2  TTC  1172


seq1: chr12_9764275_9765125
seq2: B6Ng01-139A08.g_67_917

seq1  GAATTCTCCTCTTGCCTCAATACATTCTTTTTAAGGTACAAATAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCTTGCCTCAATACATTCTTTTTAAGGTACAAATAAAAAAC  50

seq1  TGATCTCTGCATATATGCACATGCATGAATGTACCATGCCATTCTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTGCATATATGCACATGCATGAATGTACCATGCCATTCTCTTTG  100

seq1  CTTGGAACTTAATTTTAAAATTTCGATGGCAAAGATTTTCTGTAGCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACTTAATTTTAAAATTTCGATGGCAAAGATTTTCTGTAGCAATT  150

seq1  TTTTCATTTGAAAAAAGAAACAACAGTACAGCCATTGATAAATAAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTGAAAAAAGAAACAACAGTACAGCCATTGATAAATAAGAAAA  200

seq1  ACCAATATTAGGAGGAGGTAAGAATATTAGTAATAGCATTAACTATATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATATTAGGAGGAGGTAAGAATATTAGTAATAGCATTAACTATATCA  250

seq1  TATTAAACTTGATTCCATAAATTATTTTTAAATCTCATGACTCAAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACTTGATTCCATAAATTATTTTTAAATCTCATGACTCAAAATGT  300

seq1  GAAAATGCATAGGTTCATCACTTTGTTCTTTTCTCTATTGGGTTGACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCATAGGTTCATCACTTTGTTCTTTTCTCTATTGGGTTGACATG  350

seq1  TATATGTCTGTGTTTGGCATTTTTAATCTTGAGCCATTTAATTGTTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTCTGTGTTTGGCATTTTTAATCTTGAGCCATTTAATTGTTAGCT  400

seq1  TATAAGTTTTTACTTAATCAGAAAGAAAAATATCTTTGTGATGAGGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTTTTTACTTAATCAGAAAGAAAAATATCTTTGTGATGAGGTGGC  450

seq1  ATAAAAATCCCTTACTACACAGAAAGCCAGCCTTAAATAATTCTTTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATCCCTTACTACACAGAAAGCCAGCCTTAAATAATTCTTTGAAA  500

seq1  TAGAACTGACCTCCATGGACTAGAACGAAGGCAGTAAGGAAACAGAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTGACCTCCATGGACTAGAACGAAGGCAGTAAGGAAACAGAATGT  550

seq1  TCCCTGAAACAGAACCCAGAAGCCAAAACTCGTGATTCCCTCAAGGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAAACAGAACCCAGAAGCCAAAACTCGTGATTCCCTCAAGGGTTG  600

seq1  AAAATATTTCCCCCTGAATTAACTTATACTTGTGTTTCTGCCACTATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTCCCCCTGAATTAACTTATACTTGTGTTTCTGCCACTATGTT  650

seq1  TTTTTTGCAGTGAACATTTGATAAAGATGGTCATTGTTCAGTTTCCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCAGTGAACATTTGATAAAGATGGTCATTGTTCAGTTTCCAGGT  700

seq1  GGTCTGCAAGACCTGGATGCTACCCATGATCCTGAGCAGGAAGTCTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCAAGACCTGGATGCTACCCATGATCCTGAGCAGGAAGTCTTTGA  750

seq1  TAAATCTAGATGCAATTTCCCTAATGATGCTATTGATGCCTGCTACAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTAGATGCAATTTCCCTAATGATGCTATTGATGCCTGCTACAAGT  800

seq1  TGACTTATGCATCTTCTGAAGATGTGTGTGTGTGTGTGTGTGTGTGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTATGCATCTTCTGAAGATGTGTGTGTGTGTGTGTGTGTGTGTGTG  850

seq1  T  851
      |
seq2  T  851


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