BAC Information

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BAC

Clone NameB6Ng01-139C02
Chromosome12 (Build37)
Map Location 70,163,233 - 70,308,895
singlet/doubletdoublet
Overlap geneLOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2
Upstream geneLOC100040681, LOC100040696
Downstream geneKlhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2, LOC100040879, L2hgdh, Atp5s, Cdkl1, Map4k5, Spg3a, EG622339, Sav1, LOC100040999, Nin, ENSMUSG00000056391, Gm804, Pygl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139C02.bB6Ng01-139C02.g
ACCDH938196DH938197
length8511,067
definitionDH938196|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C02, 5' end.DH938197|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,308,045 - 70,308,895)(70,163,233 - 70,164,329)
sequence
gaattcagacaaagggttccgttttcagttttcacgactaatccttgcag
gtaagtcactcaaaaacagcattttgtgttaaacttctgttcattttaaa
attactctaatttatttctgaaatttgactgctaagagtagatctaaaaa
gtaaatttgattttagattcctcacgctttgaaaacgatttaactatatt
cagatacttaaccagcagtgactctgtggtctttgtgttggcagtggtat
ctccagcttcctcaggaatcccatccttgtgggtccagatgtccagtgtc
ctttctctccggatgccctgtagatctgtgagcactcggattctacccga
gctccacgctcacctgtcctgggaccaaccccatctcatttcatggcacc
cttgtctttgcagttgctcgggccatgaccatagaggtttcccctacaca
cagctgagttcggttgcctttcatgactatgacctgaggtctactctagt
ctggatcagcagcctctagctgctggtctctggcttctaacccctctcct
cccaataccccccatcccccacccccacccccaccccgagtctgttcttt
acacaagaaagcatatcatgtcacttctgtcttgaaaggtggggtcccta
gtgctgttgttaacagcccaatcctggcagtgatagtcatgtcctgcctg
catggtgtgccctggtactgctttgatttcctctccccgttgcttccctc
acaccagtctctgtgccccaagcatgcaaggcatgacccagtcttaggtc
ctgcattgtgcctcttccccctgcctgacgggggtgggggtgggggcgag
g
gaattctctgttgctgagtttcatattcttttctttttttttttaaacat
cagaacatattcacttgtgctaactctttactgctatgcatatttccaga
ggattgaaagcaatcctctatctcacccaactgtgaaccttgcaagctac
atcagtgactggtctgacaatgtatacctattggtgtagcagtggtaata
gtgacacgatcgttataagaggaactaaccactttctgactggggccctg
ggccactcagtgaggcagaggccataactggcattgttttgtggaccaat
aatctgtggctagataagtcatcggccttaggggaaaacttagtgctatt
attctggaaaaactatatagtatttgtgagaacaggactaaggatggggg
ctaagagacaacaaagtcagatgatgcatcctgagaaatccagctccaga
gacgagcatcagggtgcagatctgagtttgttgcccagagcattatctta
tatacagtgtttgagccaatcctgaggccctaaatcctcagctgatctta
tttcaccacaccattaccatgatccaatgaaaggcctgcctaatgaggtg
gaaggggcttggggtggacatttcacccattaggactttcgtgaagatgg
gagaagcagccactgccttggcctcagttcctttttgctgtctcaccagt
gttctgggagctgtgtagggaagattaagactttttgaggtgtcgcatga
acctgtggagcctcattttccatcccacattttccttgacaaggttgacc
tccacttccacattcacgtgtgacctccatgtgtgttgacctccacacgt
attgaaatgactcctaatggcgtgttgctatatctgtagatgtgaacatc
tctcagtctcagtagagaagcttgtctgcagagattgttgatttggcaga
ggactctcactggtctccgcagaaataaagatgtgaggctggtgagatgc
tcagcagtagagcacaactgctctcaaggtctgagttcaattcagcacaa
tggtggctccacattcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_70308045_70308895
seq2: B6Ng01-139C02.b_45_895 (reverse)

seq1  CCTCGCCCCCACCCCCACCCCCGTCAGGCAGGGGGAAGAGGCACAATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCCCCCACCCCCACCCCCGTCAGGCAGGGGGAAGAGGCACAATGCA  50

seq1  GGACCTAAGACTGGGTCATGCCTTGCATGCTTGGGGCACAGAGACTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTAAGACTGGGTCATGCCTTGCATGCTTGGGGCACAGAGACTGGTG  100

seq1  TGAGGGAAGCAACGGGGAGAGGAAATCAAAGCAGTACCAGGGCACACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAAGCAACGGGGAGAGGAAATCAAAGCAGTACCAGGGCACACCAT  150

seq1  GCAGGCAGGACATGACTATCACTGCCAGGATTGGGCTGTTAACAACAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGGACATGACTATCACTGCCAGGATTGGGCTGTTAACAACAGCA  200

seq1  CTAGGGACCCCACCTTTCAAGACAGAAGTGACATGATATGCTTTCTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGACCCCACCTTTCAAGACAGAAGTGACATGATATGCTTTCTTGTG  250

seq1  TAAAGAACAGACTCGGGGTGGGGGTGGGGGTGGGGGATGGGGGGTATTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACAGACTCGGGGTGGGGGTGGGGGTGGGGGATGGGGGGTATTGG  300

seq1  GAGGAGAGGGGTTAGAAGCCAGAGACCAGCAGCTAGAGGCTGCTGATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGGGGTTAGAAGCCAGAGACCAGCAGCTAGAGGCTGCTGATCCA  350

seq1  GACTAGAGTAGACCTCAGGTCATAGTCATGAAAGGCAACCGAACTCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAGTAGACCTCAGGTCATAGTCATGAAAGGCAACCGAACTCAGCT  400

seq1  GTGTGTAGGGGAAACCTCTATGGTCATGGCCCGAGCAACTGCAAAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTAGGGGAAACCTCTATGGTCATGGCCCGAGCAACTGCAAAGACAA  450

seq1  GGGTGCCATGAAATGAGATGGGGTTGGTCCCAGGACAGGTGAGCGTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCATGAAATGAGATGGGGTTGGTCCCAGGACAGGTGAGCGTGGAG  500

seq1  CTCGGGTAGAATCCGAGTGCTCACAGATCTACAGGGCATCCGGAGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGTAGAATCCGAGTGCTCACAGATCTACAGGGCATCCGGAGAGAAA  550

seq1  GGACACTGGACATCTGGACCCACAAGGATGGGATTCCTGAGGAAGCTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGGACATCTGGACCCACAAGGATGGGATTCCTGAGGAAGCTGGA  600

seq1  GATACCACTGCCAACACAAAGACCACAGAGTCACTGCTGGTTAAGTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCACTGCCAACACAAAGACCACAGAGTCACTGCTGGTTAAGTATCT  650

seq1  GAATATAGTTAAATCGTTTTCAAAGCGTGAGGAATCTAAAATCAAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAGTTAAATCGTTTTCAAAGCGTGAGGAATCTAAAATCAAATTTA  700

seq1  CTTTTTAGATCTACTCTTAGCAGTCAAATTTCAGAAATAAATTAGAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGATCTACTCTTAGCAGTCAAATTTCAGAAATAAATTAGAGTAA  750

seq1  TTTTAAAATGAACAGAAGTTTAACACAAAATGCTGTTTTTGAGTGACTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATGAACAGAAGTTTAACACAAAATGCTGTTTTTGAGTGACTTA  800

seq1  CCTGCAAGGATTAGTCGTGAAAACTGAAAACGGAACCCTTTGTCTGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAGGATTAGTCGTGAAAACTGAAAACGGAACCCTTTGTCTGAATT  850

seq1  C  851
      |
seq2  C  851

seq1: chr12_70163233_70164329
seq2: B6Ng01-139C02.g_67_1133

seq1  GAATTCTCTGTTGCTGAGTTTCATATTCTTTTCTTTTTTTTTTTAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTGCTGAGTTTCATATTCTTTTCTTTTTTTTTTTAAACAT  50

seq1  CAGAACATATTCACTTGTGCTAACTCTTTACTGCTATGCATATTTCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATATTCACTTGTGCTAACTCTTTACTGCTATGCATATTTCCAGA  100

seq1  GGATTGAAAGCAATCCTCTATCTCACCCAACTGTGAACCTTGCAAGCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAAAGCAATCCTCTATCTCACCCAACTGTGAACCTTGCAAGCTAC  150

seq1  ATCAGTGACTGGTCTGACAATGTATACCTATTGGTGTAGCAGTGGTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGACTGGTCTGACAATGTATACCTATTGGTGTAGCAGTGGTAATA  200

seq1  GTGACACGATCGTTATAAGAGGAACTAACCACTTTCTGACTGGGGCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACGATCGTTATAAGAGGAACTAACCACTTTCTGACTGGGGCCCTG  250

seq1  GGCCACTCAGTGAGGCAGAGGCCATAACTGGCATTGTTTTGTGGACCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTCAGTGAGGCAGAGGCCATAACTGGCATTGTTTTGTGGACCAAT  300

seq1  AATCTGTGGCTAGATAAGTCATCGGCCTTAGGGGAAAACTTAGTGCTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGGCTAGATAAGTCATCGGCCTTAGGGGAAAACTTAGTGCTATT  350

seq1  ATTCTGGAAAAACTATATAGTATTTGTGAGAACAGGACTAAGGATGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGAAAAACTATATAGTATTTGTGAGAACAGGACTAAGGATGGGGG  400

seq1  CTAAGAGACAACAAAGTCAGATGATGCATCCTGAGAAATCCAGCTCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGACAACAAAGTCAGATGATGCATCCTGAGAAATCCAGCTCCAGA  450

seq1  GACGAGCATCAGGGTGCAGATCTGAGTTTGTTGCCCAGAGCATTATCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGCATCAGGGTGCAGATCTGAGTTTGTTGCCCAGAGCATTATCTTA  500

seq1  TATACAGTGTTTGAGCCAATCCTGAGGCCCTAAATCCTCAGCTGATCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTGTTTGAGCCAATCCTGAGGCCCTAAATCCTCAGCTGATCTTA  550

seq1  TTTCACCACACCATTACCATGATCCAATGAAAGGCCTGCCTAATGAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCACACCATTACCATGATCCAATGAAAGGCCTGCCTAATGAGGTG  600

seq1  GAAGGGGCTTGGGGTGGACATTTCACCCATTAGGACTTTCGTGAAGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGCTTGGGGTGGACATTTCACCCATTAGGACTTTCGTGAAGATGG  650

seq1  GAGAAGCAGCCACTGCCTTGGCCTCAGTTCCTTTTTGCTGTCTCACCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAGCCACTGCCTTGGCCTCAGTTCCTTTTTGCTGTCTCACCAGT  700

seq1  GTTCTGGGAGCTGTGTAGGGAAGATTAAGACTTTTTGAGGTGTCGCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGAGCTGTGTAGGGAAGATTAAGACTTTTTGAGGTGTCGCATGA  750

seq1  ACCTGTGGAGCCTCATTTTCCATCCCACATTTTCCTTGACAAGGTTGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGGAGCCTCATTTTCCATCCCACATTTTCCTTGACAAGGTTGACC  800

seq1  TCCACTTCCACATTCACGTGTGACCTCCATGTGTGTTGACCTCCACACGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCCACATTCACGTGTGACCTCCATGTGTGTTGACCTCCACACGT  850

seq1  ATTGAAATGACTCCTAATGGCGTGTTGCTATATCTGTAGATGTGAACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATGACTCCTAATGGCGTGTTGCTATATCTGTAGATGTGAACATC  900

seq1  TCTCAGTTCTCAGTAGAGAAGCTTGTCCTTGCAGAAGATTTGGTGATTTG  950
      |||||| ||||||||||||||||||||  ||||| ||| ||| |||||||
seq2  TCTCAG-TCTCAGTAGAGAAGCTTGTC--TGCAG-AGA-TTGTTGATTTG  945

seq1  GCAGAGGACTCCTCAACTGGTCAACCCGCAGAAAATAAAAGATGTGGAGG  1000
      |||||||||| ||| |||||||   |||||||||   |||||||||   |
seq2  GCAGAGGACT-CTC-ACTGGTC--TCCGCAGAAA--TAAAGATGTG--AG  987

seq1  GCTGGTGAGATGGCTCAGCAGGTAAGAGCACCCAACTGCTCTTCCAAAGG  1050
      ||||||||||| |||||||||   ||||||  ||||||||||    ||||
seq2  GCTGGTGAGAT-GCTCAGCAG--TAGAGCA--CAACTGCTCT---CAAGG  1029

seq1  TCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATTCG  1097
      | |||||||||| |  |||||  || |||||||||| ||  ||||||
seq2  T-CTGAGTTCAATT--CAGCA--CA-ATGGTGGCTC-CA--CATTCG  1067