BAC Information

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BAC

Clone NameB6Ng01-139I02
Chromosome12 (Build37)
Map Location 23,957,460 - 23,958,314
singlet/doubletsinglet
Overlap genenone
Upstream gene2410018L13Rik, LOC77114, EG668669, EG668670, LOC668680, LOC100042895, LOC100043435, EG628081, LOC100042903
Downstream geneLOC100043440, EG668518, LOC100043445, LOC668697, LOC100042923, LOC677338, EG668701, LOC668471, LOC668703, LOC546534, 9030624G23Rik, EG668710
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139I02.bB6Ng01-139I02.g
ACCDH938470DH938471
length1,249857
definitionDH938470|Mus musculus domesticus DNA, BAC clone: B6Ng01-139I02, 5' end.DH938471|Mus musculus domesticus DNA, BAC clone: B6Ng01-139I02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctctccaaagtctttaccctatttatttaaaatgttcataagca
acacaggtgaaccttcaactcaatttcctttaaaatgttatggtacttag
attataacttctgtgtcaggaaatcagtggaggaagcaccaaaattgcat
gaatatatggtgaaggaagcatacgtttactttacagtgatgtcagtacc
atgttttgtgatttacacatgtatgggatattttaggatgcagtgactta
tgatgatgtgcatgtgaacttcactggggaagagtggaatttgctggatc
cttcccagaagagtctctacaaagatgtgatgctggagacctactggaac
ctcactgttataggtatgactgtaaattttctttgcttttcaaaatagta
ggaaaacatgtctcttgtttagtgatggtgctctgttattacaactgaga
acaaggaagactgagctgaataaatagtgtccagtgatgtgaaaattcac
agtaccttgaattttgcctatttccaatactggatcattcatttttctcg
tactgtcttttaggctacacttgggaaaaccatcatattgaaagacattg
tcaaagttcaagaagaaatgaaaggtaattttcatgtgcaagctgctgcg
attatgcctctaaggaaattttactatgatatggaagctctaaagaaaag
caggagtgtaaaatgtcaatacttgaagtgtaactaaaattacaatattt
ttttaagatttatttatttattatatgtaaatatactgtagctgtcctca
gatactccagaagagggcatcagatttcgttatggatgattgtgagccac
catatggttgttgggatttgaactcaggacctcggaagagcagtctgtgc
tcttaaacactgagccatcttgccggccctaataatactattcttaaaaa
aatatactgccctcgatgtagttatctgattatccatcaaaagcattctt
cttttttaaaaaagatgaggaaacattgccttagaggataacctttattc
attggaactctattagagcttatactgaactgacatggtgatagactaac
agacttaaaatgcacatcgatatggaaatatatattcaaaacctccatta
gcattagccttggaagtggtgtcactaattccttagcgactgaatcttgt
ttaggtaccgtttataggtctagagtggttctctaagggataaacccta
gaattccaggatagccagagctatacagagaaaccctgtctcaaaaacaa
acaaacaaacaaacaaacaaacaaaaaaacaaaaaaaccaaaccaaacca
aacaaaaaaaaaaagatcacagatgtcttcttggagtctgtagacgccag
aagggtttgcacacatgtgctgcaaaaacaacagatgcctggattttaat
atgtaaaaaaaggactacaccgttaatggaaaaaattaagatagtccatg
ataaactcaaatttaaacaacctctctctaaacatactgaccaacacaaa
gagatagaggtagaatctaaccgaggaagttaaggatacacatgaaaaca
caggtagtaaataatctcttactgtctacaaaagaagggaaggcacacac
acagcccaacaccaacaccacccgcagctgcaacaacaacaaaatacaag
gagttagcaatcaccatttattgactcattcaataaaaataagttttgat
ttgggagaaaatgtagctgtaagttggcccaggactttgaggtttttgtg
tttgaaagctatacaactttctgtctcaggttgggtgtgggcggtggggt
tttgaagataaacttctgagtatgcttttgtgtctctcactgataagtag
tgacttaattctaataagttcttttccccccctcccgcccccccagacag
ggtttctctgtgtagccctgggttgtcctggaacacactctagacttgtt
gggcctctaactcagaaatctgcctgcatctgcctcccgagtgctaggat
tatagggagtgcaccaccaccacccagcccaataaattcttatcattgca
gtgtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_23957460_23958314
seq2: B6Ng01-139I02.g_70_926

seq1  GAATTCCAGGATAGCCAGAGCTATACAGAGAAACCCTGTCTCAAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATAGCCAGAGCTATACAGAGAAACCCTGTCTCAAAAACAA  50

seq1  ACAAACAAACAAACAAACCAACAACAAA--AAAAAAACCAAACCAAACCA  98
      |||||||||||||||||| ||||| |||  ||||||||||||||||||||
seq2  ACAAACAAACAAACAAACAAACAAAAAAACAAAAAAACCAAACCAAACCA  100

seq1  AACAAAAAAAAAAAAGATCACAGATGTCTTCTTGGAGTCTGTAGACGCCA  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAC-AAAAAAAAAAAGATCACAGATGTCTTCTTGGAGTCTGTAGACGCCA  149

seq1  GAAGGGTTTGCACACATGTGCTGCAAAAACAACAGATGCCTGGATTTTAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTTTGCACACATGTGCTGCAAAAACAACAGATGCCTGGATTTTAA  199

seq1  TATGTAAAAAAAGGACTACACCGTTAATGGAAAAAATTAAGATAGTCCAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATGTAAAAAAAGGACTACACCGTTAATGGAAAAAATTAAGATAGTCCAT  249

seq1  GATAAACTCAAATTTAAACAACCTCTCTCTAAACATACTGACCAACACAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACTCAAATTTAAACAACCTCTCTCTAAACATACTGACCAACACAA  299

seq1  AGAGATAGAGGTAGAATCTAACCGAGGAAGTTAAGGATACACGTGAAAAC  348
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGAGATAGAGGTAGAATCTAACCGAGGAAGTTAAGGATACACATGAAAAC  349

seq1  ACAGGTAGTAAATAATCTCTTACTGTCTACAAAAGAAGGGAAGGCACACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGTAAATAATCTCTTACTGTCTACAAAAGAAGGGAAGGCACACA  399

seq1  CACAGCCCAACACCAACACCACCCGCAGCTGCAACAACAACAAAATACAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCAACACCAACACCACCCGCAGCTGCAACAACAACAAAATACAA  449

seq1  GGAGTTAGCAATCACCATTTATTGACTCATTCAATAAAAATAAGTTTTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTAGCAATCACCATTTATTGACTCATTCAATAAAAATAAGTTTTGA  499

seq1  TTTGGGAGAAAATGTAGCTGTAAGTTGGCCCAGGACTTTGAGGTTTTTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAGAAAATGTAGCTGTAAGTTGGCCCAGGACTTTGAGGTTTTTGT  549

seq1  GTTTGAAAGCTATACAACTTTCTGTCTCAGGTTGGGTGTGGGCGGTGGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAGCTATACAACTTTCTGTCTCAGGTTGGGTGTGGGCGGTGGGG  599

seq1  TTTTGAAGATAAACTTCTGAGTATGCTTTTGTGTCTCTCACTGATAAGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGATAAACTTCTGAGTATGCTTTTGTGTCTCTCACTGATAAGTA  649

seq1  GTGACTTAATTCTAATAAGTTCTTTCCCCCCCTCCCCCCCCCCCCAGACA  698
      ||||||||||||||||||||||||| ||||||  ||| ||||||||||||
seq2  GTGACTTAATTCTAATAAGTTCTTTTCCCCCCCTCCCGCCCCCCCAGACA  699

seq1  GGGTTTCTCTGTGTAGACCT-GGCTGTCCTGGAACACACTCTAGACTTGT  747
      |||||||||||||||| ||| || ||||||||||||||||||||||||||
seq2  GGGTTTCTCTGTGTAGCCCTGGGTTGTCCTGGAACACACTCTAGACTTGT  749

seq1  TGGGCCTCTAACTCAGAAATCTGCCTGCATCTGCCTCCCGAGTGCTAGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTCTAACTCAGAAATCTGCCTGCATCTGCCTCCCGAGTGCTAGGA  799

seq1  TTA-AAGGAGTGCACCACCACCACCCAGCCCAATAAATTCTTATCCTTTG  846
      ||| | |||||||||||||||||||||||||||||||||||||| | |||
seq2  TTATAGGGAGTGCACCACCACCACCCAGCCCAATAAATTCTTAT-CATTG  848

seq1  CATTGTCCT  855
      || |||| |
seq2  CAGTGTCTT  857