BAC Information

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BAC

Clone NameB6Ng01-139I08
Chromosome12 (Build37)
Map Location 110,655,629 - 110,656,819
singlet/doubletsinglet
Overlap genenone
Upstream geneEml1, Evl, Degs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194
Downstream geneDlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139I08.bB6Ng01-139I08.g
ACCDH938482DH938483
length1,1611,164
definitionDH938482|Mus musculus domesticus DNA, BAC clone: B6Ng01-139I08, 5' end.DH938483|Mus musculus domesticus DNA, BAC clone: B6Ng01-139I08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagtctccattctacctacccttagcagctgtgtggccttgtgt
gcattacctccactctctgtgcctctggatcaccccctctgtagcttgag
agctagccctgccctttacacagtgagtcctgggcctagaaggaacaatg
cctgcagcttaccacacttagagaagacttcatgcctatcctggctcaca
gacctgtctcccaggcctgtgtcatgtgccactgagtgtcgcttgtggga
acatcctttggggactgtcttgcttgtcttgttgtccccattgctctatg
aatttgatttaatagggtccagcagccccccccccccagtccaagtttgg
ccacggtttccccagggatacatgacagagggacaatccaaagatgtgac
acaagcaggggctgagcagctccctagcaagaggaaaattctagaacgcg
agtcagggctccatcccttggtttttaagattccctgagcttcccacttg
cagtagaaacagcttactttcagattagtcagccagtgtgagtcagtcag
ggcctcaccagccctgcctgtggaatattgatgcagtctgctctgccaag
ggggcggaggggcctcctgggggcccagggcccctgcctgcagccattcc
atccgtttcaaggtttgctcagtgcctcaccacgcacacaggcagcccct
tcctttgtttctctggcccaacatcaccgccccccctccagagacagggt
gattaatccccccataccggaggagcaggggccaagcagccacataagtc
atgcccacgctgacagcaggcaaggtagacgcccagagctttggccttgg
tgcacgttggggagggaggccccattggccttctgctctgaagggggaga
ggggcctgggaaagcagattgcacacagagcagtgttgtctcagaggaga
ggggagagcagccacaccctttgaggcgccatagtcccctccttcctgga
tcacgtgctctcaatcttcatgtgctcacagccttgctgatcgcctcctt
ctagggctccaatggagcctgctaaactaactgccgtgggtctttgggag
agaacagctcccatgaggtatccaggaaatgcattggcctataggtgagg
cccctgccgtg
gaattctcacctgaagaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctta
gaaaatcggacatagtactactggaggatccagcaatacctctcctgggc
atatatcaagatgtcccaaccagtatgaaggacacatgctccactatgtt
catagcagccttatttataataaccagaagctggaaagaacccagatgcc
cctcaacagaggaatggatacagaaaatgtggtacatttacacaatggag
tactactcagctattaaaaagaatgaatttatgaaattcctaggcaaatg
gatggacctggagggcatcatcctgagtgaggtaacccaatcacaaagga
actcacacaatatgtactcactgataagtggatattagcccaaaacttag
gatacccaagatataagatacaatttgctaaacgcatgaaactctagaag
aatgaagaccaaagtgtggacactgtgccccttcttagaattgggaacaa
aacacccttggaaggagttacagagacaaagtttggagctgtgacaaaag
gatggaccatctagcacctgccatatctagggatccaccccataattggc
ttccaaacactgacaccattgcatacactagcaagattttgctgaaagga
cccagatatagctgtcttcttgtgagactatgccagggcctagcaaacac
agaagtgatgcttcacagtcagctagtggatggatcacagggctctcaat
ggaggagctagagaagtacccaaggatctaaaggatctgcacccttatag
gtgaacattatgactaccagtacccggagctcttgactctagctatatgt
atcaaagatggcctagtcgcatcactgaatgaggccattggactgcactt
tattgccagtaacaggggacctcagggccaaaaatggaattgggttggta
gtggatattgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_110655629_110656819
seq2: B6Ng01-139I08.b_48_1208 (reverse)

seq1  CACGGCCAGGCGGCCTCACCTTACTAGGCCCACGTGGCCTGTTTTCCCTG  50
      ||||| |||| ||||||||||   |||||| |       ||  || ||||
seq2  CACGG-CAGG-GGCCTCACCT--ATAGGCCAA-------TGCATTTCCTG  39

seq1  GGTGTCCCTCATGTGGGAGCTGTCTCTCTCCACAAGACCCCACGGCCAGT  100
      |   | |||||  |||||||||| |||||||  |||| ||||||| ||||
seq2  G--ATACCTCA--TGGGAGCTGT-TCTCTCCCAAAGA-CCCACGG-CAGT  82

seq1  CTAGGTCTAGGCAGGGCTCCACTGGGAGCCCCAGGGAGGGGGGCGATCAG  150
       || || || ||| ||||||| | ||||||| |  || || |||||||||
seq2  -TA-GTTTA-GCA-GGCTCCA-TTGGAGCCCTA--GAAGGAGGCGATCAG  125

seq1  CAAAGGGCTGTGAGCACATGAAGGAATGAGAGCACGTGAATCCAGGAAGG  200
      |||  ||||||||||||||||| || |||||||||||| |||||||||||
seq2  CAA--GGCTGTGAGCACATGAA-GATTGAGAGCACGTG-ATCCAGGAAGG  171

seq1  AGGGGACTATGGCGCCTCAAAGGGTGTGGGCTGCTCTCCCCTCTCCTCTT  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  AGGGGACTATGGCGCCTCAAAGGGTGT-GGCTGCTCTCCCCTCTCCTCT-  219

seq1  GGAGACAACACTGCTCTGTGTGCAATCTGCTTT-CCAGGCCCCTCTCCCC  299
       |||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  -GAGACAACACTGCTCTGTGTGCAATCTGCTTTCCCAGGCCCCTCTCCCC  268

seq1  CTTCAGAGCAGAAGGCCAATGGGGCCTCCCTCCCCAACGTGCACCAAGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGCAGAAGGCCAATGGGGCCTCCCTCCCCAACGTGCACCAAGGC  318

seq1  CAAAGCTCTGGGCGTCTACCTTGCCTGCTGTCAGCGTGGGCATGACTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTCTGGGCGTCTACCTTGCCTGCTGTCAGCGTGGGCATGACTTAT  368

seq1  GTGGCTGCTTGGCCCCTGCTCCTCCGGTATGGGGGGATTAATCACCCTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGCTTGGCCCCTGCTCCTCCGGTATGGGGGGATTAATCACCCTGT  418

seq1  CTCTGGAGGGGGGGCGGTGATGTTGGGCCAGAGAAAC-AAGGAAGGGGCT  498
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCTGGAGGGGGGGCGGTGATGTTGGGCCAGAGAAACAAAGGAAGGGGCT  468

seq1  GCCTGTGTGCGTGGTGAGGCACTGAGCAAACCTTGAAACGGATGGAATGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTGCGTGGTGAGGCACTGAGCAAACCTTGAAACGGATGGAATGG  518

seq1  CTGCAGGCAGGGGCCCTGGGCCCCCAGGAGGCCCCTCCGCCCCCTTGGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCAGGGGCCCTGGGCCCCCAGGAGGCCCCTCCGCCCCCTTGGCA  568

seq1  GAGCAGACTGCATCAATATTCCACAGGCAGGGCTGGTGAGGCCCTGACTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGACTGCATCAATATTCCACAGGCAGGGCTGGTGAGGCCCTGACTG  618

seq1  ACTCACACTGGCTGACTAATCTGAAAGTAAGCTGTTTCTACTGCAAGTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACTGGCTGACTAATCTGAAAGTAAGCTGTTTCTACTGCAAGTGG  668

seq1  GAAGCTCAGGGAATCTTAAAAACCAAGGGATGGAGCCCTGACTCGCGTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCAGGGAATCTTAAAAACCAAGGGATGGAGCCCTGACTCGCGTTC  718

seq1  TAGAATTTTCCTCTTGCTAGGGAGCTGCTCAGCCCCTGCTTGTGTCACAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTTCCTCTTGCTAGGGAGCTGCTCAGCCCCTGCTTGTGTCACAT  768

seq1  CTTTGGATTGTCCCTCTGTCATGTATCCCTGGGGAAACCGTGGCCAAACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATTGTCCCTCTGTCATGTATCCCTGGGGAAACCGTGGCCAAACT  818

seq1  TGGACTGGGGGGGGGGGGCTGCTGGACCCTATTAAATCAAATTCATAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGGGGGGGGGGGGCTGCTGGACCCTATTAAATCAAATTCATAGAG  868

seq1  CAATGGGGACAACAAGACAAGCAAGACAGTCCCCAAAGGATGTTCCCACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGGACAACAAGACAAGCAAGACAGTCCCCAAAGGATGTTCCCACA  918

seq1  AGCGACACTCAGTGGCACATGACACAGGCCTGGGAGACAGGTCTGTGAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGACACTCAGTGGCACATGACACAGGCCTGGGAGACAGGTCTGTGAGC  968

seq1  CAGGATAGGCATGAAGTCTTCTCTAAGTGTGGTAAGCTGCAGGCATTGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAGGCATGAAGTCTTCTCTAAGTGTGGTAAGCTGCAGGCATTGTT  1018

seq1  CCTTCTAGGCCCAGGACTCACTGTGTAAAGGGCAGGGCTAGCTCTCAAGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAGGCCCAGGACTCACTGTGTAAAGGGCAGGGCTAGCTCTCAAGC  1068

seq1  TACAGAGGGGGTGATCCAGAGGCACAGAGAGTGGAGGTAATGCACACAAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGGGGGTGATCCAGAGGCACAGAGAGTGGAGGTAATGCACACAAG  1118

seq1  GCCACACAGCTGCTAAGGGTAGGTAGAATGGAGACTGGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACAGCTGCTAAGGGTAGGTAGAATGGAGACTGGAATTC  1161