BAC Information

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BAC

Clone NameB6Ng01-139K11
Chromosome12 (Build37)
Map Location 103,876,023 - 104,024,751
singlet/doubletdoublet
Overlap geneItpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7
Upstream geneMtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga
Downstream geneEG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139K11.bB6Ng01-139K11.g
ACCDH938584DH938585
length796237
definitionDH938584|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K11, 5' end.DH938585|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,023,955 - 104,024,751)(103,876,023 - 103,876,259)
sequence
gaattccagcgtcagaaagttgaaggggattccccagactaagatggcta
gccagattaaccattatcaatgagttctaggtttgagtaagagaatctgt
cttggctctgcatagtgacatacacctttaatcccagcacttggaaggca
gaggcacagatctctgtgagttcagggccagcctggtctacgtgaattcc
aggacaaccaggatacatagagaggcctgcagaagagggtggggtagagg
agagaaaagagacgtggtgtgcaggggaaggggtagtaggcaatgattaa
attacctatcaataatacagtaaaatgttacatggtgatttcaaataatc
tcaaaggaagttgagtgatagaactgtgtgcactaaattttgtatataat
acagattcatagatagaaagctgaagagctacataatgctaacagcgata
acctctttaggaaagtgtagtggtttgtattattttatatgtataattgt
acttttaggacttctaaatacaatgatgtactttgtaaacttgaaaggat
ttgaaagaaatgtatggatcttttttctttttgataatgcccctttgttt
ctgtctcagtgtccacagcctgtgctgaatgacctgatgccagatatcgc
catggggggtgtctacactgtcactcaggacaggaggctcccagagctcg
ctgcagacacagagttatgccagacagtttctgaatcacgaacgggacct
ccccagcatctgtcatgtttccacagagacacacaaacacatctcg
cagagagtgaagcagaattcaaagaaatgttgagatccaactaaaccctc
tgcctctctaaggagtcggggatggtggtggtagtggtggtagaatacat
acacacacaaacacacacagtgctaggatagcaacttctaattagcccca
tcctagttgacttatgtcagcctggctctagctgtgaccttggcatatca
ctaagattcatgggtaggagggggactgctgactcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_104023955_104024751
seq2: B6Ng01-139K11.b_45_840 (reverse)

seq1  CGAGATGTGTTTGTGTGTCTCTGTGGAATACATGACAGATGCTGGGGAGG  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CGAGATGTGTTTGTGTGTCTCTGTGGAA-ACATGACAGATGCTGGGGAGG  49

seq1  TCCCGTTCCTGCTTCAGAAACTGTCTGGCATAACTCTGTGTCTGCAGCGA  100
      |||||||| || ||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTTCGTGATTCAGAAACTGTCTGGCATAACTCTGTGTCTGCAGCGA  99

seq1  GCTCTGGGAGCCTCCTGTCCTTGAGTGACAGTGTAGACA-CCCCCATGGC  149
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  GCTCTGGGAGCCTCCTGTCC-TGAGTGACAGTGTAGACACCCCCCATGGC  148

seq1  GATATCTGGCATCAGGTCATTCAGCACAGGCTGTGGACACTGAGACAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTGGCATCAGGTCATTCAGCACAGGCTGTGGACACTGAGACAGAA  198

seq1  ACAAAGGGGCATTATCAAAAAGAAAAAAGATCCATACATTTCTTTCAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGGCATTATCAAAAAGAAAAAAGATCCATACATTTCTTTCAAAT  248

seq1  CCTTTCAAGTTTACAAAGTACATCATTGTATTTAGAAGTCCTAAAAGTAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAAGTTTACAAAGTACATCATTGTATTTAGAAGTCCTAAAAGTAC  298

seq1  AATTATACATATAAAATAATACAAACCACTACACTTTCCTAAAGAGGTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACATATAAAATAATACAAACCACTACACTTTCCTAAAGAGGTTA  348

seq1  TCGCTGTTAGCATTATGTAGCTCTTCAGCTTTCTATCTATGAATCTGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGTTAGCATTATGTAGCTCTTCAGCTTTCTATCTATGAATCTGTAT  398

seq1  TATATACAAAATTTAGTGCACACAGTTCTATCACTCAACTTCCTTTGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACAAAATTTAGTGCACACAGTTCTATCACTCAACTTCCTTTGAGA  448

seq1  TTATTTGAAATCACCATGTAACATTTTACTGTATTATTGATAGGTAATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAAATCACCATGTAACATTTTACTGTATTATTGATAGGTAATTT  498

seq1  AATCATTGCCTACTACCCCTTCCCCTGCACACCACGTCTCTTTTCTCTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTGCCTACTACCCCTTCCCCTGCACACCACGTCTCTTTTCTCTCC  548

seq1  TCTACCCCACCCTCTTCTGCAGGCCTCTCTATGTATCCTGGTTGTCCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCCACCCTCTTCTGCAGGCCTCTCTATGTATCCTGGTTGTCCTGG  598

seq1  AATTCACGTAGACCAGGCTGGCCCTGAACTCACAGAGATCTGTGCCTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACGTAGACCAGGCTGGCCCTGAACTCACAGAGATCTGTGCCTCTG  648

seq1  CCTTCCAAGTGCTGGGATTAAAGGTGTATGTCACTATGCAGAGCCAAGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAAGTGCTGGGATTAAAGGTGTATGTCACTATGCAGAGCCAAGAC  698

seq1  AGATTCTCTTACTCAAACCTAGAACTCATTGATAATGGTTAATCTGGCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCTTACTCAAACCTAGAACTCATTGATAATGGTTAATCTGGCTA  748

seq1  GCCATCTTAGTCTGGGGAATCCCCTTCAACTTTCTGACGCTGGAATTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTTAGTCTGGGGAATCCCCTTCAACTTTCTGACGCTGGAATTC  796

seq1: chr12_103876023_103876259
seq2: B6Ng01-139K11.g_75_311

seq1  CAGAGAGTGAAGCAGAATTCAAAGAAATGTTGAGATCCAACTAAACCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGTGAAGCAGAATTCAAAGAAATGTTGAGATCCAACTAAACCCTC  50

seq1  TGCCTCTCTAAGGAGTCGGGGATGGTGGTGGTAGTGGTGGTAGAATACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCTAAGGAGTCGGGGATGGTGGTGGTAGTGGTGGTAGAATACAT  100

seq1  ACACACACAAACACACACAGTGCTAGGAGAGCAACTTCTAATTAGCCCCA  150
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACACACACAAACACACACAGTGCTAGGATAGCAACTTCTAATTAGCCCCA  150

seq1  TCCTAGTTGACTTATGTCAGCCTGGCTCTAGCTGTGACCTTGGCATATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTGACTTATGTCAGCCTGGCTCTAGCTGTGACCTTGGCATATCA  200

seq1  CTAAGATTCATGGGTAGGAGGGGGACTGCTGACTCTA  237
      |||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTCATGGGTAGGAGGGGGACTGCTGACTCTA  237