BAC Information

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BAC

Clone NameB6Ng01-141A15
Chromosome12 (Build37)
Map Location 11,212,863 - 11,256,238
singlet/doubletdoublet
Overlap geneMsgn1, 5830483C08Rik
Upstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276
Downstream geneSmc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141A15.bB6Ng01-141A15.g
ACCDH939608DH939609
length1,1781,075
definitionDH939608|Mus musculus domesticus DNA, BAC clone: B6Ng01-141A15, 5' end.DH939609|Mus musculus domesticus DNA, BAC clone: B6Ng01-141A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,255,036 - 11,256,238)(11,212,863 - 11,213,949)
sequence
gaattcagaaagagctggaagacgtgagcttattcagcaggaagtctcag
aggctgaaaacactctaggtgtaggcttaggttggattgtacagaggctt
gaaacttccaagactaggcctagcttagcagagggaggcagaaagccttt
ggagacaattacttcaggagaattaaagttacttttaagtcctgattttt
gtctttttattttttcacttaggtcatccaagagttccttttgaataaga
ataaaatgttgaaaccgatcacataccaaagacctgatttattattgttt
caggtatctggaagtaaattcttacttaataatacaaaattagatatgag
aaagatcaaaaggatattagcttccatgtgtgagaggagacttaaaacct
aaaacagataactgttgactgccccactattactcattattcacctccaa
cctttaccccttggctgtgtaagatccatacttttcagaccataaggcaa
acacagactgcttctcagaaagatgtctcggttactatgtgcagacaagt
cgaatccaggaatatgtccaggaaagaaggttcaggacaagggatgctaa
gatcaaagacactgactatgaaatgtcctgaaaatagaagtaatattacc
acctcgtcaaatcaccatgagtgttaaatgaggttattttaacctgtgat
gttgtaattagggaaacagatggctcagtgaacctacttgcacattacct
tgctggtagtcattatactttataaatgtcttcctacttaatctacataa
actgtgaacagggttacattctctccatttatagattgaaaaatgaccta
ggagggtcaaggagcatccccccccctccttacatagactggtactctgg
tggagggccttctcaaccaggttgtcatttgacaccttctccttaggagc
tccttgtttttttctgggaatatcatcactatattactttagcattactc
ttaaagcaaaataatattgtcttagagtatttcttgtttaaagtaatatt
acttaaatatatactgaatctaagattactgtttcaaaatggagtgccca
gtcactatgcatgtgaaatgttggtgcttggactcgtctagcctgtatga
aagaaacctggtgaaagacctccaatca
gaattcaacttgtagaaaaattaatttcagttgtgttacagatccaatac
ttaaaaaaatgcaacaataaaaaatgttttaaaaagaaatttaagccttt
ggaactaggaaaaattaagcaaaagggaaaaaaaaatcatataagccata
aaataaaaataacaaaaaggttaatcatataaagatgaaaaacttgaaag
agcaagatatgacataatcaaaattataaatataaaacagcataaaaaca
aatgtttaaaaaaacaacaaattgtaaggaaatattttcccatgaacgta
ctttcccagattaacagtaagaaaatccatctgaaaaagtgcaaaggcca
taaactgatccattacagaagaaccaaaccagtcatggtctcacaagccc
aaacaaagatgctgcatcgcagctaacaaggggataaattaaccttacca
caatgatgacgtcactggagttgcccattaccggttttgaggtggtttct
agccaaagattatgtaagaccactagcttatcatatgatgtttgtggaga
cataaataaactacaaacttttatgaaagtgaggagataatatttattaa
aatgtaaaatatgaccacattctgacctaggaatgctctccctaaggact
tctaaagctaatttaaaaactaccagcggtcaaaccttttgtctgtattc
gtccaggcatggtttgtgataaaataacccacaacagcttaaacaccact
gagaaggtgcttcattttaagaaattatgcagaatctgtgctggggagga
ttgtgggactggggaaatcacacttcaattttctcatctgtaaggtcaaa
ataatagtggtacttttaaaaatacacatttatgcaaatttacatctcta
ggtaagaatcagagtgtacagaattaaagacaactctcaagaatacatgt
gcacatgtttatttgtgtatacttctgtcatcaagaagagtagagaaata
aacatgagactgtgaacacagtcactgcttttatattatggaataagaag
atgcaagatcaaggcagggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_11255036_11256238
seq2: B6Ng01-141A15.b_49_1226 (reverse)

seq1  TGATTGGAGGTCTTTCTACCATGTTTTCTTTCTATCATGTCATAGCGGGT  50
      |||||||||||||||| |||| | ||||||||   || |  | | || ||
seq2  TGATTGGAGGTCTTTC-ACCA-GGTTTCTTTCATACAGGCTAGA-CGAGT  47

seq1  CAAAAGCACCAACAATTTTTCACATGCATAGTGACTGGGCCACTCCATTT  100
      |  |||||||||||   |||||||||||||||||||||| ||||||| ||
seq2  C-CAAGCACCAACA---TTTCACATGCATAGTGACTGGG-CACTCCA-TT  91

seq1  TTTGAACAGTAAATCTCTAGAAATACAGTAAATAAATATTTAAAGTAAAT  150
      ||  |||||| ||||| |||  || ||||| |||     || |||| |||
seq2  TTGAAACAGT-AATCT-TAG--ATTCAGTATATA-----TTTAAGT-AAT  131

seq1  ATTACTTTTAAAACAAGAAATACTCTTAAGACAATATTATTTTTGCTTTA  200
      ||||||||  ||||||||||||||| ||||||||||||| ||||||||||
seq2  ATTACTTT--AAACAAGAAATACTC-TAAGACAATATTA-TTTTGCTTTA  177

seq1  AGAGTAATGCTAAAGTAATATTAGTGATGATATTTCCAGAAAAAAACAAG  250
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  AGAGTAATGCTAAAGTAATA-TAGTGATGATATTCCCAGAAAAAAACAAG  226

seq1  GAGCTCCCTAAGGAGAAGGTGTCAAATGACAACCTGGTTGAGAAGGCCCT  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCT-CCTAAGGAGAAGGTGTCAAATGACAACCTGGTTGAGAAGGCCCT  275

seq1  CCACCAGAGTACCAGTCTATGTAAGGAGGGGGGGGGATGCTCCTTGACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGAGTACCAGTCTATGTAAGGAGGGGGGGGGATGCTCCTTGACCC  325

seq1  TCCTAGGTCATTTTTCAATCTATAAATGGAGAGAATGTAACCCTGTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGTCATTTTTCAATCTATAAATGGAGAGAATGTAACCCTGTTCAC  375

seq1  AGTTTATGTAGATTAAGTAGGAAGACATTTATAAAGTATAATGACTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATGTAGATTAAGTAGGAAGACATTTATAAAGTATAATGACTACCA  425

seq1  GCAAGGTAATGTGCAAGTAGGTTCACTGAGCCATCTGTTTCCCTAATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTAATGTGCAAGTAGGTTCACTGAGCCATCTGTTTCCCTAATTAC  475

seq1  AACATCACAGGTTAAAATAACCTCATTTAACACTCATGGTGATTTGACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCACAGGTTAAAATAACCTCATTTAACACTCATGGTGATTTGACGA  525

seq1  GGTGGTAATATTACTTCTATTTTCAGGACATTTCATAGTCAGTGTCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAATATTACTTCTATTTTCAGGACATTTCATAGTCAGTGTCTTTG  575

seq1  ATCTTAGCATCCCTTGTCCTGAACCTTCTTTCCTGGACATATTCCTGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGCATCCCTTGTCCTGAACCTTCTTTCCTGGACATATTCCTGGAT  625

seq1  TCGACTTGTCTGCACATAGTAACCGAGACATCTTTCTGAGAAGCAGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACTTGTCTGCACATAGTAACCGAGACATCTTTCTGAGAAGCAGTCTG  675

seq1  TGTTTGCCTTATGGTCTGAAAAGTATGGATCTTACACAGCCAAGGGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCTTATGGTCTGAAAAGTATGGATCTTACACAGCCAAGGGGTAA  725

seq1  AGGTTGGAGGTGAATAATGAGTAATAGTGGGGCAGTCAACAGTTATCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGAGGTGAATAATGAGTAATAGTGGGGCAGTCAACAGTTATCTGT  775

seq1  TTTAGGTTTTAAGTCTCCTCTCACACATGGAAGCTAATATCCTTTTGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTTTTAAGTCTCCTCTCACACATGGAAGCTAATATCCTTTTGATC  825

seq1  TTTCTCATATCTAATTTTGTATTATTAAGTAAGAATTTACTTCCAGATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATATCTAATTTTGTATTATTAAGTAAGAATTTACTTCCAGATAC  875

seq1  CTGAAACAATAATAAATCAGGTCTTTGGTATGTGATCGGTTTCAACATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAATAATAAATCAGGTCTTTGGTATGTGATCGGTTTCAACATTT  925

seq1  TATTCTTATTCAAAAGGAACTCTTGGATGACCTAAGTGAAAAAATAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTATTCAAAAGGAACTCTTGGATGACCTAAGTGAAAAAATAAAAA  975

seq1  GACAAAAATCAGGACTTAAAAGTAACTTTAATTCTCCTGAAGTAATTGTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAATCAGGACTTAAAAGTAACTTTAATTCTCCTGAAGTAATTGTC  1025

seq1  TCCAAAGGCTTTCTGCCTCCCTCTGCTAAGCTAGGCCTAGTCTTGGAAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGCTTTCTGCCTCCCTCTGCTAAGCTAGGCCTAGTCTTGGAAGT  1075

seq1  TTCAAGCCTCTGTACAATCCAACCTAAGCCTACACCTAGAGTGTTTTCAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCCTCTGTACAATCCAACCTAAGCCTACACCTAGAGTGTTTTCAG  1125

seq1  CCTCTGAGACTTCCTGCTGAATAAGCTCACGTCTTCCAGCTCTTTCTGAA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGACTTCCTGCTGAATAAGCTCACGTCTTCCAGCTCTTTCTGAA  1175

seq1  TTC  1203
      |||
seq2  TTC  1178

seq1: chr12_11212863_11213949
seq2: B6Ng01-141A15.g_66_1140

seq1  GAATTCAACTTGTAGAAAAATTAATTTCAGTTGTGTTACAGATCCAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTGTAGAAAAATTAATTTCAGTTGTGTTACAGATCCAATAC  50

seq1  TTAAAAAAATGCAACAATAAAAAATGTTTTAAAAAGAAATTTAAGCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAATGCAACAATAAAAAATGTTTTAAAAAGAAATTTAAGCCTTT  100

seq1  GGAACTAGGAAAAATTAAGCAAAAGGGAAAAAAAAATCATATAAGCCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAGGAAAAATTAAGCAAAAGGGAAAAAAAAATCATATAAGCCATA  150

seq1  AAATAAAAATAACAAAAAGGTTAATCATATAAAGATGAAAAACTTGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATAACAAAAAGGTTAATCATATAAAGATGAAAAACTTGAAAG  200

seq1  AGCAAGATATGACATAATCAAAATTATAAATATAAAACAGCATAAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATATGACATAATCAAAATTATAAATATAAAACAGCATAAAAACA  250

seq1  AATGTTTAAAAAAACAACAAATTGTAAGGAAATATTTTCCCATGAACGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTAAAAAAACAACAAATTGTAAGGAAATATTTTCCCATGAACGTA  300

seq1  CTTTCCCAGATTAACAGTAAGAAAATCCATCTGAAAAAGTGCAAAGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAGATTAACAGTAAGAAAATCCATCTGAAAAAGTGCAAAGGCCA  350

seq1  TAAACTGATCCATTACAGAAGAACCAAACCAGTCATGGTCTCACAAGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGATCCATTACAGAAGAACCAAACCAGTCATGGTCTCACAAGCCC  400

seq1  AAACAAAGATGCTGCATCGCAGCTAACAAGGGGATAAATTAACCTTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGATGCTGCATCGCAGCTAACAAGGGGATAAATTAACCTTACCA  450

seq1  CAATGATGACGTCACTGGAGTTGCCCATTACCGGTTTTGAGGTGGTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATGACGTCACTGGAGTTGCCCATTACCGGTTTTGAGGTGGTTTCT  500

seq1  AGCCAAAGATTATGTAAGACCACTAGCTTATCATATGATGTTTGTGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGATTATGTAAGACCACTAGCTTATCATATGATGTTTGTGGAGA  550

seq1  CATAAATAAACTACAAACTTTTATGAAAGTGAGGAGATAATATTTATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATAAACTACAAACTTTTATGAAAGTGAGGAGATAATATTTATTAA  600

seq1  AATGTAAAATATGACCACATTCTGACCTAGGAATGCTCTCCCTAAGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAATATGACCACATTCTGACCTAGGAATGCTCTCCCTAAGGACT  650

seq1  TCTAAAGCTAATTTAAAAACTACCAGCGGTCAAACCTTTTGTCTGTATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGCTAATTTAAAAACTACCAGCGGTCAAACCTTTTGTCTGTATTC  700

seq1  GTCCAGGCATGGTTTGTGATAAAATAACCCACAACAGCTTAAACACCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGCATGGTTTGTGATAAAATAACCCACAACAGCTTAAACACCACT  750

seq1  GAGAAGGTGCTTCATTTTAAGAAATTATGCAGAATCTGTGCTGGGGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGTGCTTCATTTTAAGAAATTATGCAGAATCTGTGCTGGGGAGGA  800

seq1  TTGTGGGACTGGGGAAATCACACTTCAATTTTCTCATCTGTAAGGTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGACTGGGGAAATCACACTTCAATTTTCTCATCTGTAAGGTCAAA  850

seq1  ATAATAGTGGTACTTTTAAAAATACACATTTATGCAAATTTACATCTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGTGGTACTTTTAAAAATACACATTTATGCAAATTTACATCTCTA  900

seq1  GGTAAGAATCAGAGTGTACAGAATTAAAGACAACCCTCAAAGAATACATG  950
      |||||||||||||||||||||||||||||||||| ||| |||||||||||
seq2  GGTAAGAATCAGAGTGTACAGAATTAAAGACAACTCTC-AAGAATACATG  949

seq1  TGCACATGTTTATTTGTGTATACTTCTGTCATCAAAGAAAGAAGTAGGAG  1000
      |||||||||||||||||||||||||||||||||     |||||| || ||
seq2  TGCACATGTTTATTTGTGTATACTTCTGTCATC-----AAGAAG-AGTAG  993

seq1  GAAATTAAACATGAGACTGTGAACACAGTCACTGCTTTTATAATTTATGG  1050
        || |||||||||||||||||||||||||||||||||||||  ||||||
seq2  AGAAATAAACATGAGACTGTGAACACAGTCACTGCTTTTATA--TTATGG  1041

seq1  AATTAAGAAGATGGAAAAGACCAAAGGCAGGG-GGAGG  1087
      || ||||||||||   |||| | ||||||||| |||||
seq2  AA-TAAGAAGATG--CAAGATC-AAGGCAGGGAGGAGG  1075