BAC Information

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BAC

Clone NameB6Ng01-141C09
Chromosome12 (Build37)
Map Location 37,029,547 - 37,159,903
singlet/doubletdoublet
Overlap geneSostdc1, 4930579E17Rik
Upstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik
Downstream geneLOC638858, Meox2, A530016O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141C09.bB6Ng01-141C09.g
ACCDH939681DH939682
length9211,139
definitionDH939681|Mus musculus domesticus DNA, BAC clone: B6Ng01-141C09, 5' end.DH939682|Mus musculus domesticus DNA, BAC clone: B6Ng01-141C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,158,982 - 37,159,903)(37,029,547 - 37,030,714)
sequence
gaattcttcactttgattaaaatactataaaattgccaacctcacaacca
agtctctgcctatagctcttatgaatttctcataaatgtattgagggttt
tataaagagggtattttggtgttgcttggtttagtttctgtgttttcttt
tgcttttttactgtgcttgacaaattgaactaagagtctcacacatcagc
tacatgtcctaccacggggctatagctccagttccccttatacatgcaca
tccaagcacagagatagatagatgatagatgatagatagatagatagata
gatagatagatagatagatgcagacaaatggtagatagagagacacagag
agaaagagaaagagacagagtgataggaaggatataaacagagacagaga
tagaggcagagacagagagacagagattgccaataaacacaattccttcc
actggtagcacatacacatgtatctctatacaaaattcaactcaacaata
tttattaagaaccaaatgtgaaccttgaagtcttccagatgctagagata
aggtggataagacaaacttcttacactcatggaattaaaattctatcata
atagaagggaaaaaaatcacaaagtggtagatgttaggggaaggtgagat
ctaatagagaaaacaaagaggtgtatgacagagattgccacatttggagt
taaggagggagtgacatttgcacaaagacgtaaaaccatagtgagaagta
tctaaggagcatgcatagaacacacacacactcacacacactcacacaca
ctcacatacatacacttttgtattctcatgctcagacactctttcacagc
tattcttaaaacagatatatatgtgatatcataaatattagacatgccgg
cttagaataaaaagataccat
gaattcttgaaaggctctaggccttattttgaatcataggatgatttgac
tggatcaaagagtggtttggcaagcagttgtttgagaaccctgaaactgt
gccaacatttctgagctgatctgctcaagagtgaatccatttggaggaac
cataattatcatgtgcgctagccacctttataattgggaggcgaaacagc
acaggaagagaactgtacatgacaatgttgatgtgcttcgggcttgtctt
tagatgctccatcttacaaagatttgatctgcagggatccaagcctttca
agtgcttcagcctcggacttgtaaggtatttggagacagtcaccctaggg
tgtggctctgcacagttgcgtttggtttagcccgacttctgaagctagcc
agattccagggactatctagtatggctgcaaaaccagccgggcatttcgc
tggccactaaacagcttgtgatgtcctggcaggagtggcctctgcagcct
gtttcaagatcccttttggctgtttgtcaggaagcctgacctaccccaaa
tactggcagcccacagcccccacctacattataaacacaaagaactccat
ccaaagccagtatcaactgttgcttcacataaaacagttcaaatcataat
cattttaaggattctctttgtattttcttgtttaaaacaatttaatcaat
gtctcttaatcagagtataattgctaaagagtatctgtgagatttttgtt
taatttaatctttccaaccttatacaagggtaaggcctaaaaaaccaaac
caaacaaacaaacaaacaaacaaacaaaaactctacaaaagtactgaaga
taaacgccatgaccaaaaaataaaaatttaaaaaataataaatatggggt
cacaatgcagcatcacctccctagacattttttcttcttaataaacggat
tgagcctatctgttcatgtgcacttcagaacaaatatgaggccagttcag
tatcagagtgtacagtagatgtcatgccttgagacttagtgagccacact
cttttctatagatttgcacatttatgattccaaccaatattgaaacacca
tattttctttatcaggaataactggctcttatgaatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_37158982_37159903
seq2: B6Ng01-141C09.b_47_967 (reverse)

seq1  ATGGTATCTTTTTTATTCTTAG-CGGCCTGTCTAATATTTTATGAATATC  49
      |||||||| |||||||||| || |||| ||||||||| |||||| |||||
seq2  ATGGTATC-TTTTTATTCTAAGCCGGCATGTCTAATA-TTTATG-ATATC  47

seq1  ACATATATATCTGTTTTAAAGAATAGCTGTGAAAGGGTGTCTGAGCATGA  99
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  ACATATATATCTGTTTT-AAGAATAGCTGTGAAAGAGTGTCTGAGCATGA  96

seq1  GAATAC-AAAGTGTATGTATGTGAGTGTGTGTGTGTGTGTGTGTGTGTGT  148
      |||||| |||||||||||||||||||||||||| ||||||||| ||||||
seq2  GAATACAAAAGTGTATGTATGTGAGTGTGTGTGAGTGTGTGTGAGTGTGT  146

seq1  GTGTGTTCTATGCATGCTCCTTAGATACTTCTCACTATGG-TTTACGTCT  197
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGTGTTCTATGCATGCTCCTTAGATACTTCTCACTATGGTTTTACGTCT  196

seq1  TTGTGCAAATGTCACTCCCTCCTTTACTCCAAATGTGGCAATCTCTGTCA  247
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGTGCAAATGTCACTCCCTCCTTAACTCCAAATGTGGCAATCTCTGTCA  246

seq1  TACACCTCTTTGTTTTCTCTATTAGATCTCACCTTCCCCTAACATCTACC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTCTTTGTTTTCTCTATTAGATCTCACCTTCCCCTAACATCTACC  296

seq1  ACTTTGTGATTTTTTTCCCTTCTATTATGATAGAATTTTAATTCCATGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTGATTTTTTTCCCTTCTATTATGATAGAATTTTAATTCCATGAG  346

seq1  TGTAAGAAGTTTGTCTTATCCACCTTATCTCTAGCATCTGGAAGACTTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAGTTTGTCTTATCCACCTTATCTCTAGCATCTGGAAGACTTCA  396

seq1  AGGTTCACATTTGGTTCTTAATAAATATTGTTGAGTTGAATTTTGTATAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCACATTTGGTTCTTAATAAATATTGTTGAGTTGAATTTTGTATAG  446

seq1  AGATACATGTGTATGTGCTACCAGTGGAAGGAATTGTGTTTATTGGCAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATGTGTATGTGCTACCAGTGGAAGGAATTGTGTTTATTGGCAAT  496

seq1  CTCTGTCTCTCTGTCTCTGCCTCTATCTCTGTCTCTGTTTATATCCTTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCTCTGTCTCTGCCTCTATCTCTGTCTCTGTTTATATCCTTCC  546

seq1  TATCACTCTGTCTCTTTCTCTTTCTCTCTGTGTCTCTCTATCTACCATTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTCTGTCTCTTTCTCTTTCTCTCTGTGTCTCTCTATCTACCATTT  596

seq1  GTCTGCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTA  646

seq1  TCATCTATCTATCTCTGTGCTTGGATGTGCATGTATAAGGGGAACTGGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATCTATCTCTGTGCTTGGATGTGCATGTATAAGGGGAACTGGAG  696

seq1  CTATAGCCCCGTGGTAGGACATGTAGCTGATGTGTGAGACTCTTAGTTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCCCCGTGGTAGGACATGTAGCTGATGTGTGAGACTCTTAGTTCA  746

seq1  ATTTGTCAAGCACAGTAAAAAAGCAAAAGAAAACACAGAAACTAAACCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCAAGCACAGTAAAAAAGCAAAAGAAAACACAGAAACTAAACCAA  796

seq1  GCAACACCAAAATACCCTCTTTATAAAACCCTCAATACATTTATGAGAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACACCAAAATACCCTCTTTATAAAACCCTCAATACATTTATGAGAAA  846

seq1  TTCATAAGAGCTATAGGCAGAGACTTGGTTGTGAGGTTGGCAATTTTATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGAGCTATAGGCAGAGACTTGGTTGTGAGGTTGGCAATTTTATA  896

seq1  GTATTTTAATCAAAGTGAAGAATTC  922
      |||||||||||||||||||||||||
seq2  GTATTTTAATCAAAGTGAAGAATTC  921

seq1: chr12_37029547_37030714
seq2: B6Ng01-141C09.g_69_1207

seq1  GAATTCTTGAAAGGCTCTAGGCCTTATTTTGAATCATAGGATGATTTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAAGGCTCTAGGCCTTATTTTGAATCATAGGATGATTTGAC  50

seq1  TGGATCAAAGAGTGGTTTGGCAAGCAGTTGTTTGAGAACCCTGAAACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAAAGAGTGGTTTGGCAAGCAGTTGTTTGAGAACCCTGAAACTGT  100

seq1  GCCAACATTTCTGAGCTGATCTGCTCAAGAGTGAATCCATTTGGAGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACATTTCTGAGCTGATCTGCTCAAGAGTGAATCCATTTGGAGGAAC  150

seq1  CATAATTATCATGTGCGCTAGCCACCTTTATAATTGGGAGGCGAAACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTATCATGTGCGCTAGCCACCTTTATAATTGGGAGGCGAAACAGC  200

seq1  ACAGGAAGAGAACTGTACATGACAATGTTGATGTGCTTCGGGCTTGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGAGAACTGTACATGACAATGTTGATGTGCTTCGGGCTTGTCTT  250

seq1  TAGATGCTCCATCTTACAAAGATTTGATCTGCAGGGATCCAAGCCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCTCCATCTTACAAAGATTTGATCTGCAGGGATCCAAGCCTTTCA  300

seq1  AGTGCTTCAGCCTCGGACTTGTAAGGTATTTGGAGACAGTCACCCTAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTCAGCCTCGGACTTGTAAGGTATTTGGAGACAGTCACCCTAGGG  350

seq1  TGTGGCTCTGCACAGTTGCGTTTGGTTTAGCCCGACTTCTGAAGCTAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTCTGCACAGTTGCGTTTGGTTTAGCCCGACTTCTGAAGCTAGCC  400

seq1  AGATTCCAGGGACTATCTAGTATGGCTGCAAAACCAGCCGGGCATTTCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCAGGGACTATCTAGTATGGCTGCAAAACCAGCCGGGCATTTCGC  450

seq1  TGGCCACTAAACAGCTTGTGATGTCCTGGCAGGAGTGGCCTCTGCAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTAAACAGCTTGTGATGTCCTGGCAGGAGTGGCCTCTGCAGCCT  500

seq1  GTTTCAAGATCCCTTTTGGCTGTTTGTCAGGAAGCCTGACCTACCCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAGATCCCTTTTGGCTGTTTGTCAGGAAGCCTGACCTACCCCAAA  550

seq1  TACTGGCAGCCCACAGCCCCCACCTACATTATAAACACAAAGAACTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCAGCCCACAGCCCCCACCTACATTATAAACACAAAGAACTCCAT  600

seq1  CCAAAGCCAGTATCAACTGTTGCTTCACATAAAACAGTTCAAATCATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCCAGTATCAACTGTTGCTTCACATAAAACAGTTCAAATCATAAT  650

seq1  CATTTTAAGGATTCTCTTTGTATTTTCTTGTTTAAAACAATTTAATCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAGGATTCTCTTTGTATTTTCTTGTTTAAAACAATTTAATCAAT  700

seq1  GTCTCTTAATCAGAGTATAATTGCTAAAGAGTATCTGTGAGATTTTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTAATCAGAGTATAATTGCTAAAGAGTATCTGTGAGATTTTTGTT  750

seq1  TAATTTAATCTTTCCAACCTTATACAAGGGTAAGGCCTAAAAAACCAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATCTTTCCAACCTTATACAAGGGTAAGGCCTAAAAAACCAAAC  800

seq1  CAAACAAACAAACAAACAAACAAACAAAAACTCTACAAAAGTACTGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAAACAAACAAAAACTCTACAAAAGTACTGAAGA  850

seq1  TAAACGCCATGACCAAAAAAATAAAAAATTTAAAAAATAAATAAATAATG  900
      ||||||||||||||||||||   ||||||||||||||| ||||||| |||
seq2  TAAACGCCATGACCAAAAAA--TAAAAATTTAAAAAAT-AATAAAT-ATG  896

seq1  GGGTCACAATGCAGGCATCACCTCCCTAGAACATTTTTTTCTTCTTAATA  950
      ||||||||||||| ||||||||||||||| ||| ||||||||||||||||
seq2  GGGTCACAATGCA-GCATCACCTCCCTAG-ACA-TTTTTTCTTCTTAATA  943

seq1  AAC-GATTGAGCCTTATCTGTTCATGTGCACTTCAGAACAAATATGAGGC  999
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACGGATTGAGCC-TATCTGTTCATGTGCACTTCAGAACAAATATGAGGC  992

seq1  CAGTTCAGTATCAGAGTGTTACAGTAGGTTGTCATGCCTTGAGACTTAGT  1049
      |||||||||||||||||| ||||||| | |||||||||||||||||||||
seq2  CAGTTCAGTATCAGAGTG-TACAGTA-GATGTCATGCCTTGAGACTTAGT  1040

seq1  GAAGCCACACTTTGTTTCTATAGGATTTTGCAAAATTTTAAAATGAAATA  1099
      | ||||||||| | |||||||||   |||||| | ||     ||||    
seq2  G-AGCCACACTCT-TTTCTATAG--ATTTGCACATTT-----ATGA---T  1078

seq1  TCAAGACAAATTATTGAAAACACATATTTTCTTTAATCAAGGTAAATTAA  1149
      || |  |||  ||||||||   |||||||||||| |||| |    | |||
seq2  TCCAACCAA--TATTGAAACACCATATTTTCTTT-ATCAGG----AATAA  1121

seq1  CTGTGCTCTTATGAATCAA  1168
      ||| |||||||||||||||
seq2  CTG-GCTCTTATGAATCAA  1139