BAC Information

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BAC

Clone NameB6Ng01-141F10
Chromosome12 (Build37)
Map Location 116,289,044 - 116,290,191
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48
Downstream geneIghv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141F10.bB6Ng01-141F10.g
ACCDH939821DH939822
length1,0321,142
definitionDH939821|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F10, 5' end.DH939822|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcataaatccattgttattaattgctgagtagtacttcattgtgta
aatgtaccacatttcctgtatccattcttctgctgaggtacatctgggtt
ctttccaacttctggctactataaataaggctgctatgaacatagtggag
caggtgttcttatcagatagaacttcattggctatatgcccaagagtggt
attgctggatcttcaggtagtattatgtccaatttcctgaggaaaataca
gactgacttccaaagtggttgtacaagcttgcaatttcaaccgggagtgg
aggagtgtttttctttctccacatccttgccagcatctgctgtcacctga
atttttgattttagccattctgactggtgtgaggtggaatttaagggtta
ttttgatttgcatttccctgatgattaaggatgttgaacatttttcaggt
gctcctcagccattcagtattcctcagttgagaattcttagtttagctct
gaaccctattttcaatgggtttatttgaagttctggagtccagcttcttg
agctctttgtatatattggatatcagtcccctatcagatttggagaactt
tgatccacttagacttgatctttctacaagaagataagaatggatcaatt
ctcgttattctacatgataaccgccagttttgacagcaccatttgtagaa
aatgctgtctttttttccactggatggttttagctcccttgtcaaagatt
aagtgaaaatggctgtgaggattcgtttctgggtcttcacttctattcca
ttaatctgcctgtctgtcaatgtaccagtaccatgcagtttttatcacat
tgctctgtagtacagctttaatgtcagcatgatgattccacagaggttct
tttatgtgagaatagttttgcaatcctaagttttttttcccgatgaattg
caattgccttttctatctcagtgagatcgagtggattttgatggggatgc
ttgaaacttagattgctttggcaggataccat
gaattctcaaaaaaggaatcactaatggagagaggcacttaaaggaatgt
tcaccttccttagccaacagtgaaatgcaaatcaaaatgagtttggggtt
ccatcagaatggctaagatcaaaatcacaagtgatagctaatgctggtga
ggatctggagcaaggtgaacagtcctccatttcagagaggagttcacact
tttatagacacattggagcacagttatataaataaaaccattacaagaag
atatctattgttaattaatattacacacacacacacatatacatatatat
gtatatatttgtatatatatatgtacatatatatcattcattatatatat
atatatatatatatatatatatatatcattcatgacatatgaaccttttt
gaaaggtcaaacatcacttgcatatccatttaaaagaaatctacagagtt
tcaaacatgaggtgttaaacacctagtcatcagcatcactatcaacagca
taagtaaatctatctgtaagttcttcctctgtcagagatttttttttcag
atggaaaatatgatcatgaattgggagcacaggccttggtgttccatcca
caccgctgagcagatgaggccttctggtcaagtgttgatgacctggttcc
aaggtgtcctccagtgccatgtgcagccctcagttcaaggaaagaggaga
atgagaagctaaaaattttcttcatctggatttcattaaattctggtttt
catcattcatcttttgtgcctaataaaggtttgaaatcaaatttgtaata
tcaagcattgtgtgatttttgtgacttggggataagacataagaagaaag
taactaatttaaagcctatatttgtagttggttcagaatcctcagacaac
accatataccttaccggtttgcaatgcatttatgcagtttactacaactt
tctggatttcaaggccattttatctgttcacaggctctgggcttattagt
ataggttaaacgatgttctgtcgttcaatttgttgaatgtcaggttatgt
cccatattcttccaattttcagattgaatcgcgaagaatctatacttgta
ataagaatcaccacctagggtgtatataagattcaggttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116289044_116290191
seq2: B6Ng01-141F10.g_68_1209 (reverse)

seq1  AATAACCTGAAATTCTATATACAACATTGGTGTTGATTCTTAATCAGATA  50
      ||||||||| |||  |||||||| | | |||| ||||||||| |   |  
seq2  AATAACCTG-AATCTTATATACACCCTAGGTGGTGATTCTTATTACAAGT  49

seq1  ATGAATTATTCTGCGAGTCAATCTGAAAATTAGGATGAATATGGGACATA  100
      ||  ||| ||| |||| |||||||||||||| ||| ||||||||||||| 
seq2  ATAGATTCTTC-GCGATTCAATCTGAAAATT-GGAAGAATATGGGACAT-  96

seq1  AACCTTGAACATCAAACAAGATTGAACGACAGAACAATGATTAAACTAAT  150
      |||||   ||||  ||||| ||||||||||||||||  | |||| || ||
seq2  AACCT--GACATTCAACAA-ATTGAACGACAGAACATCGTTTAACCT-AT  142

seq1  ACTACATAAGGCCCAGAGCATTGTGAACAGATAAAATGGCCTTGGAATCC  200
      |||| |||| |||||||||  ||||||||||||||||||||||| |||||
seq2  ACTA-ATAA-GCCCAGAGC-CTGTGAACAGATAAAATGGCCTTGAAATCC  189

seq1  AGGAAGTTGTAGTAAACTGCATAAATGCATGTGCAAA-CGGT-AGGTATA  248
      || ||||||||||||||||||||||||||| |||||| |||| |||||||
seq2  AGAAAGTTGTAGTAAACTGCATAAATGCAT-TGCAAACCGGTAAGGTATA  238

seq1  TGGTGTTGGTCTGAGGATTCTGAACC-ACTACAAATATAGGCTTT-AATT  296
      ||||||| |||||||||||||||||| |||||||||||||||||| ||||
seq2  TGGTGTT-GTCTGAGGATTCTGAACCAACTACAAATATAGGCTTTAAATT  287

seq1  AGTTACTTTCTTCTTATGTCTTAT-CCCAAGTCACAAAAATCACACAATG  345
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTTACTTTCTTCTTATGTCTTATCCCCAAGTCACAAAAATCACACAATG  337

seq1  CTTGATATTACAAATTTGATTTCAAACCTTTATTAGGCACAAAAGATGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATTACAAATTTGATTTCAAACCTTTATTAGGCACAAAAGATGAA  387

seq1  TGATGAAAACCAGAATTTAATGAAATCCAGATGAAGAAAATTTTTAGCTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAAACCAGAATTTAATGAAATCCAGATGAAGAAAATTTTTAGCTT  437

seq1  CTCATTCTCCTCTTTCCTTGAACTGAGGGCTGCACATGGCACTGGAGGAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTCCTCTTTCCTTGAACTGAGGGCTGCACATGGCACTGGAGGAC  487

seq1  ACCTTGGAACCAGGTCATCAACACTTGACCAGAAGGCCTCATCTGCTCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGAACCAGGTCATCAACACTTGACCAGAAGGCCTCATCTGCTCAG  537

seq1  CGGTGTGGATGGAACACCAAGGCCTGTGCTCCCAATTCATGATCATATTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTGGATGGAACACCAAGGCCTGTGCTCCCAATTCATGATCATATTT  587

seq1  TCCATCTGAAAAAAAAATCTCTGACAGAGGAAGAACTTACAGATAGATTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTGAAAAAAAAATCTCTGACAGAGGAAGAACTTACAGATAGATTT  637

seq1  ACTTATGCTGTTGATAGTGATGCTGATGACTAGGTGTTTAACACCTCATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGCTGTTGATAGTGATGCTGATGACTAGGTGTTTAACACCTCATG  687

seq1  TTTGAAACTCTGTAGATTTCTTTTAAATGGATATGCAAGTGATGTTTGAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACTCTGTAGATTTCTTTTAAATGGATATGCAAGTGATGTTTGAC  737

seq1  CTTTCAAAAAGGTTCATATGTCATGAATG--ATATATATATATATATATA  793
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  CTTTCAAAAAGGTTCATATGTCATGAATGATATATATATATATATATATA  787

seq1  TATATATATATATAATGAATGATATATATGTACATATATATATACAAATA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATAATGAATGATATATATGTACATATATATATACAAATA  837

seq1  TATACATATATATGTATATGTGTGTGTGTGTGTAATATTAATTAACAATA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATATATATGTATATGTGTGTGTGTGTGTAATATTAATTAACAATA  887

seq1  GATATCTTCTTGTAATGGTTTTATTTATATAACTGTGCTCCAATGTGTCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTCTTGTAATGGTTTTATTTATATAACTGTGCTCCAATGTGTCT  937

seq1  ATAAAAGTGTGAACTCCTCTCTGAAATGGAGGACTGTTCACCTTGCTCCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTGTGAACTCCTCTCTGAAATGGAGGACTGTTCACCTTGCTCCA  987

seq1  GATCCTCACCAGCATTAGCTATCACTTGTGATTTTGATCTTAGCCATTCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCACCAGCATTAGCTATCACTTGTGATTTTGATCTTAGCCATTCT  1037

seq1  GATGGAACCCCAAACTCATTTTGATTTGCATTTCACTGTTGGCTAAGGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAACCCCAAACTCATTTTGATTTGCATTTCACTGTTGGCTAAGGAA  1087

seq1  GGTGAACATTCCTTTAAGTGCCTCTCTCCATTAGTGATTCCTTTTTTGAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACATTCCTTTAAGTGCCTCTCTCCATTAGTGATTCCTTTTTTGAG  1137

seq1  AATTC  1148
      |||||
seq2  AATTC  1142