BAC Information

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BAC

Clone NameB6Ng01-141G03
Chromosome12 (Build37)
Map Location 17,514,640 - 17,689,252
singlet/doubletdoublet
Overlap geneOdc1, LOC100042522, LOC100042528
Upstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501
Downstream geneHpcal1, EG668525, LOC673341, EG245297, LOC100042573, LOC668539, LOC100043324, LOC636282, EG632781, LOC668541, LOC673160, 5730507C01Rik, EG668553
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141G03.bB6Ng01-141G03.g
ACCDH939855DH939856
length1,047951
definitionDH939855|Mus musculus domesticus DNA, BAC clone: B6Ng01-141G03, 5' end.DH939856|Mus musculus domesticus DNA, BAC clone: B6Ng01-141G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,688,198 - 17,689,252)(17,514,640 - 17,515,386)
sequence
gaattccagactcacttgaccacatctaggagagatttagaggccggttc
ctcatttgtgcttctagttagagaatctgaggggaaaaaaaattgcaaaa
gccccaaggcccagtgccagaatgttactgcacccctgaaggaactaatg
ttgaaataaagccagttacattgaaaccacagacttctagagcctgcagt
tcagatcagtagatgaatgtgaacatctatgggcagaccttgaagacaat
atggaaggagactgctacaagtctgaaacgtgttgctagttatctttgta
catcatggtacttacttcattacaaatggtttaaggttcccgtgcttgtc
tgagtgagaaatgtccctataggctcaccatttgaacatttgatccccag
ttgctggcaatgtttgggaaggctgtggaggaggtggagccttgatggag
gaagtatgtcagtaggggcagatttgagggttgatagcttcgctctacat
cctgttcttttccccttcccccactttctgcttgtggatgaaaatgtgat
cagctaacttcatgtttctaccaccatgcttgcctgccactcttccttac
ctgcccttctatgggaccctgcatgtgtgttgtacacatatatacactca
ggcatgcctacatacacataaaataatagaataattcttaatgtaacaag
aatattctcccatgtgttttcctttattagcaagtctggatttcggtatt
tggccacacccaggtcatctgaatgtcaaagtttctgggaaagcaatcac
tggggagacatccttctacctaggcagaggtgatactgttggcatccctg
taaggccacatttctggataatgctgaacctcaaggaaaggagaaatgtg
actcggaaggaagtaaatgtcacaggacatttattaggacagagaagtct
catgcatgtgcttaaattaagaaagaacagaaaaggaggcagggacagtc
acttaaggaaagatgtaaaaatgtatttctggggactttttggcctg
gaattcacactgagtagacagcactcttgtggaagatgctcacgcgagga
gaattctaaggaggttccattacctacgaggcttgccagatacctgcaga
tccacaaggctggcagctaacttctggcttgtaaacataagaacacaagc
ccacagctacattttcccccgctttttttttaaaacgacttatgttattt
tattttatttattttattattttttttgctgagtagtgatggcacttaga
ggcaggtaaatctctaaacttggtctacacagtgagttccaggacaacct
gggatacccagagaaatgctgtctcgaaacaccaaaaagaaagaaaaaag
aaaagaaaaagaaaaatgaacagaaagaataggtttgttttattttcaat
tgtatgagcgcatgcgtctctgtgcgtgaattgcagcccctgtgagcgca
ggtgcccctgagactggaagaagagtggggtcccctggaggtggattaca
gttctgagctgcccagtgtggatgtggggagtcaaacttgggccccatga
ggaacagtaatgttcttcagtgttgtgctgtctcttcgaccctatctttc
ctgtttttagttgaaatagagttcacagtccacgaaagcactccttcagt
atgtcattcctgtaggctctagtgcctgcagccatcactgcgctctagct
tccaagggttttcatctgcccgcccgcaaagcaacaccactcccagtact
gtcactccccacttgtcatcccaagtcacttccacccatgtgcctcattc
atgtctctgtagattttctgattctgcatatctcatttatttgggttcat
atagtatatggactagccttggtccacccttggtcactgtcctagttgca
agcacatccctgttgcagtgattaccaggacactattccttttgattggc
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_17688198_17689252
seq2: B6Ng01-141G03.b_48_1094 (reverse)

seq1  CAGGCCCAAAAGTCCCCAGATATCATTTTTTACATCTTTCCTATAAGTGA  50
      |||||| ||||||||||||| ||   |||||||||||||||| |||||||
seq2  CAGGCCAAAAAGTCCCCAGAAATACATTTTTACATCTTTCCT-TAAGTGA  49

seq1  CTGTCCCTGCCTCCTTTTCTTGGTCCTTTCTTATTTTAAGCATCATGCAT  100
      ||||||||||||||||||||  || |||||||| |||||||| |||||||
seq2  CTGTCCCTGCCTCCTTTTCT--GTTCTTTCTTAATTTAAGCA-CATGCAT  96

seq1  GGAGACTTCTCTGTTCCTAATTAAATGTCCTGTGACATTTTACTTCCTTC  150
       |||||||||||| |||||| |||||||||||||||| ||||||||||||
seq2  -GAGACTTCTCTG-TCCTAA-TAAATGTCCTGTGACA-TTTACTTCCTTC  142

seq1  CGAGTCACATTTCTCCTTTCCTTGAGGTTCAGCATTATCCAGAAATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCACATTTCTCCTTTCCTTGAGGTTCAGCATTATCCAGAAATGTGG  192

seq1  CCTTACAGGGATGCCAACAGTATCACCTCTGCCTAGGTAGAAGGATGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAGGGATGCCAACAGTATCACCTCTGCCTAGGTAGAAGGATGTCT  242

seq1  CCCCAGTGATTGCTTTCCCAGAAACTTTGACATTCAGATGACCTGGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGATTGCTTTCCCAGAAACTTTGACATTCAGATGACCTGGGTGT  292

seq1  GGCCAAATACCGAAATCCAGACTTGCTAATAAAGGAAAACACATGGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAATACCGAAATCCAGACTTGCTAATAAAGGAAAACACATGGGAGA  342

seq1  ATATTCTTGTTACATTAAGAATTATTCTATTATTTTATGTGTATGTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTGTTACATTAAGAATTATTCTATTATTTTATGTGTATGTAGGC  392

seq1  ATGCCTGAGTGTATATATGTGTACAACACACATGCAGGGTCCCATAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGAGTGTATATATGTGTACAACACACATGCAGGGTCCCATAGAAG  442

seq1  GGCAGGTAAGGAAGAGTGGCAGGCAAGCATGGTGGTAGAAACATGAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTAAGGAAGAGTGGCAGGCAAGCATGGTGGTAGAAACATGAAGTT  492

seq1  AGCTGATCACATTTTCATCCACAAGCAGAAAGTGGGGGAAGGGGAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATCACATTTTCATCCACAAGCAGAAAGTGGGGGAAGGGGAAAAGA  542

seq1  ACAGGATGTAGAGCGAAGCTATCAACCCTCAAATCTGCCCCTACTGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGTAGAGCGAAGCTATCAACCCTCAAATCTGCCCCTACTGACAT  592

seq1  ACTTCCTCCATCAAGGCTCCACCTCCTCCACAGCCTTCCCAAACATTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCCATCAAGGCTCCACCTCCTCCACAGCCTTCCCAAACATTGCC  642

seq1  AGCAACTGGGGATCAAATGTTCAAATGGTGAGCCTATAGGGACATTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTGGGGATCAAATGTTCAAATGGTGAGCCTATAGGGACATTTCTC  692

seq1  ACTCAGACAAGCACGGGAACCTTAAACCATTTGTAATGAAGTAAGTACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGACAAGCACGGGAACCTTAAACCATTTGTAATGAAGTAAGTACCA  742

seq1  TGATGTACAAAGATAACTAGCAACACGTTTCAGACTTGTAGCAGTCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTACAAAGATAACTAGCAACACGTTTCAGACTTGTAGCAGTCTCCT  792

seq1  TCCATATTGTCTTCAAGGTCTGCCCATAGATGTTCACATTCATCTACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTGTCTTCAAGGTCTGCCCATAGATGTTCACATTCATCTACTGA  842

seq1  TCTGAACTGCAGGCTCTAGAAGTCTGTGGTTTCAATGTAACTGGCTTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTGCAGGCTCTAGAAGTCTGTGGTTTCAATGTAACTGGCTTTAT  892

seq1  TTCAACATTAGTTCCTTCAGGGGTGCAGTAACATTCTGGCACTGGGCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATTAGTTCCTTCAGGGGTGCAGTAACATTCTGGCACTGGGCCTT  942

seq1  GGGGCTTTTGCAATTTTTTTTCCCCTCAGATTCTCTAACTAGAAGCACAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTTTGCAATTTTTTTTCCCCTCAGATTCTCTAACTAGAAGCACAA  992

seq1  ATGAGGAACCGGCCTCTAAATCTCTCCTAGATGTGGTCAAGTGAGTCTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAACCGGCCTCTAAATCTCTCCTAGATGTGGTCAAGTGAGTCTGG  1042

seq1  AATTC  1055
      |||||
seq2  AATTC  1047

seq1: chr12_17514640_17515386
seq2: B6Ng01-141G03.g_69_815

seq1  GAATTCACACTGAGTAGACAGCACTCTTGTGGAAGATGCTCACGCGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGAGTAGACAGCACTCTTGTGGAAGATGCTCACGCGAGGA  50

seq1  GAATTCTAAGGAGGTTCCATTACCTACGAGGCTTGCCAGATACCTGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGAGGTTCCATTACCTACGAGGCTTGCCAGATACCTGCAGA  100

seq1  TCCACAAGGCTGGCAGCTAACTTCTGGCTTGTAAACATAAGAACACAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAGGCTGGCAGCTAACTTCTGGCTTGTAAACATAAGAACACAAGC  150

seq1  CCACAGCTACATTTTCCCCCGCTTTTTTTTTAAAACGACTTATGTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTACATTTTCCCCCGCTTTTTTTTTAAAACGACTTATGTTATTT  200

seq1  TATTTTATTTATTTTATTATTTTTTTTGCTGAGTAGTGATGGCACTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTATTTTATTATTTTTTTTGCTGAGTAGTGATGGCACTTAGA  250

seq1  GGCAGGTAAATCTCTAAACTTGGTCTACACAGTGAGTTCCAGGACAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTAAATCTCTAAACTTGGTCTACACAGTGAGTTCCAGGACAACCT  300

seq1  GGGATACCCAGAGAAATGCTGTCTCGAAACACCAAAAAGAAAGAAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACCCAGAGAAATGCTGTCTCGAAACACCAAAAAGAAAGAAAAAAG  350

seq1  AAAAGAAAAAGAAAAATGAACAGAAAGAATAGGTTTGTTTTATTTTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAGAAAAATGAACAGAAAGAATAGGTTTGTTTTATTTTCAAT  400

seq1  TGTATGAGCGCATGCGTCTCTGTGCGTGAATTGCAGCCCCTGTGAGCGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAGCGCATGCGTCTCTGTGCGTGAATTGCAGCCCCTGTGAGCGCA  450

seq1  GGTGCCCCTGAGACTGGAAGAAGAGTGGGGTCCCCTGGAGGTGGATTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCCTGAGACTGGAAGAAGAGTGGGGTCCCCTGGAGGTGGATTACA  500

seq1  GTTCTGAGCTGCCCAGTGTGGATGTGGGGAGTCAAACTTGGGCCCCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGCTGCCCAGTGTGGATGTGGGGAGTCAAACTTGGGCCCCATGA  550

seq1  GGAACAGTAATGTTCTTCAGTGTTGTGCTGTCTCTTCGACCCTATCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGTAATGTTCTTCAGTGTTGTGCTGTCTCTTCGACCCTATCTTTC  600

seq1  CTGTTTTTAGTTGAAATAGAGTTCACAGTCCACGAAAGCACTCCTTCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTAGTTGAAATAGAGTTCACAGTCCACGAAAGCACTCCTTCAGT  650

seq1  ATGTCATTCCTGTAGGCTCTAGTGCCTGCAGCCATCACTGCGCTCTAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTCCTGTAGGCTCTAGTGCCTGCAGCCATCACTGCGCTCTAGCT  700

seq1  TCCAAGGGTTTTCATCTGCCCGCCCGCAAAGCAACACCACTCCCAGT  747
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGGTTTTCATCTGCCCGCCCGCAAAGCAACACCACTCCCAGT  747