BAC Information

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BAC

Clone NameB6Ng01-141K10
Chromosome12 (Build37)
Map Location 114,259,830 - 114,431,495
singlet/doubletdoublet
Overlap genePacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121
Upstream geneTdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6
Downstream geneIgh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141K10.bB6Ng01-141K10.g
ACCDH940054DH940055
length1,114904
definitionDH940054|Mus musculus domesticus DNA, BAC clone: B6Ng01-141K10, 5' end.DH940055|Mus musculus domesticus DNA, BAC clone: B6Ng01-141K10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,430,379 - 114,431,495)(114,259,830 - 114,260,739)
sequence
gaattcaggtttctttcttttgcagccatttttccacagcaaatgtgagt
ttgttttcaagtggaaggtgaatggccacaagtccagactttcccctgtg
atgggatcagactggcaaaggctgtctgaccctggtccaacaacattact
tcaacataagtacagatagaacgggcaggcatccctaagtgtccctccct
cctcagaagccctagcttggaacccaagacctcatccagctcctagcaca
gcctctttttgtggggctcccatgcttggccatgtctgggattggacttt
gagagcctgccacagtgccaaggtgccagggaaaacactgactcctgggc
ccaatatgcagtatttcctggcccagcaagcagcacattgtagcctgagc
gtgttgcttcctcttgcccacaggcccagcctaaaggagacggtgagggc
caacaaggggctgcccaacgcaactcaccagagcccacttcctcagactg
tagatagtggagcatcagtactgaaatattggtggtctgcccagggcgtg
gcacaccacagcagacagcagtccttgctaccatcaccccttaccaaagc
ccgaccagaggaagatggagcaaagggccctaatgcatgcagccctctca
cctgcaccagaaaagggctaagattggggttaatctatgacagctttgcc
taaaggagaaaacaccagcctaccttttaagggcggggctgaagatgtag
atcagttggcccagtgcttgcctaccatgcatgaagcctgggtttcagac
agttactgcttttttaaaaggtggttgggcacagtgttcatgcctataat
ctcagctcttggaatggaggggtccatcatcctcagccactcagtgcatt
caaggacagccctagggtacatgagaccccagctcaataaacatcaaaca
gacaaacttgtccaagtcaagaaggtatctctatatattcttcagctact
tatgcagctggggaagggacagtctggagctcggactttggagccatcta
tagaaaaatagagaacctctcatctcaaaactacattgaaaactgaagga
tttagtgcccagga
gaattcactttatggctcaggatgtggtcagctctcatgcatggtttgtc
tgtgccagaggtgtatctggcagctgagagggcatggctttctgtgtgtc
cactggggcaagcttggtttgttacagttctcaaatctgtttgcttttgg
gatatttcagacatgaattaaaacataacctgagaaaatgttgtctattt
ctcttactctatgagtctttgttctgttcatttttggagtgtgttgctat
ataaatgtgcatttagaggtagagtgccttctaggtgtgaacttcttagt
tatgtttttgtttctatgttgatttggatagtggaatagctagagaaact
ttgatttgggtagtagagtttgcctgttaaatcatctttttctttttaat
gacatcttcttattcattgtatacatgctagaggcaccttggtgcgtgga
gatcagaagacggcttgcaggagtcagtttcccttcccaccctgtgggat
gagggagagagcgtgggtcgtcagactttgcacaggcaccttacccactg
atgcaactcaatggctcaactttaaaaacagaacaaaagctgattcaaaa
aaaaaaagatttatttatatgagtacactgtagctgtcttcagacacacc
agaaggtggcatcagatcccattacagatgggttgtgagccaacatgtgg
ttgctgggaattgaactcaggacctctggaaaggcagtcagtgctcttaa
ccactgagccatctcttcagctccaccttctttctttctttctttttttt
tttttttttttttggagacagggtttcatttatttataggtgggctttga
attcttagctggggataccctttacccctgagggttcttgtaacaaactc
aggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_114430379_114431495
seq2: B6Ng01-141K10.b_52_1165 (reverse)

seq1  TCCTGGGGCACTAAACTCCCTCAGCTTTCTCAACTGTTAGTTTTTGAGAT  50
      |||| |||||||||| ||| |||| ||||   | || ||| |||||||||
seq2  TCCT-GGGCACTAAA-TCCTTCAGTTTTC---AATG-TAG-TTTTGAGAT  43

seq1  --GAGGGTCTCATATTGTCTTATAGATTGGCTCCAAAGTCCTGGGCTCAA  98
        |||| |||| |||| |  |||||| |||||||||||||| | |||| |
seq2  GAGAGGTTCTC-TATTTTTCTATAGA-TGGCTCCAAAGTCC-GAGCTCCA  90

seq1  GTGCTGTCCCTGCCCCAGCTGCCTGAGTAGCTG-AGAATATA-GGTGCTA  146
      |  |||||||| |||||||||| | |||||||| ||||||||  | | ||
seq2  G-ACTGTCCCTTCCCCAGCTGCATAAGTAGCTGAAGAATATATAGAGATA  139

seq1  CCTTCCTGACTTGGGC-AGTTTGTCTGTTTGATTGTTTATTGAGCTGGGG  195
      ||||| |||||||| | ||||||||||||||| |||||||||||||||||
seq2  CCTTCTTGACTTGGACAAGTTTGTCTGTTTGA-TGTTTATTGAGCTGGGG  188

seq1  TCTCATGTACCCTA-GGCTGTCCTTGAATGCACTGAGTGGCTGAGGATGA  244
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTCATGTACCCTAGGGCTGTCCTTGAATGCACTGAGTGGCTGAGGATGA  238

seq1  TGG-CCCCTCCATTCCCAGAGCTGGGATTATAGGCATGAACACTGTGCCC  293
      ||| |||||||||||| ||||||| |||||||||||||||||||||||||
seq2  TGGACCCCTCCATTCCAAGAGCTGAGATTATAGGCATGAACACTGTGCCC  288

seq1  ACCACCCTTTTAAAAAAGCAGT-ACTGTCTGAAACCCAGGCTTCATGCAT  342
      | |  ||||||||||||||||| |||||||||||||||||||||||||||
seq2  AACCACCTTTTAAAAAAGCAGTAACTGTCTGAAACCCAGGCTTCATGCAT  338

seq1  GGTAGGCAAGCACTGGGCCAACTGATCTACATCTTCAGCCCCGCCCTT-A  391
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGTAGGCAAGCACTGGGCCAACTGATCTACATCTTCAGCCCCGCCCTTAA  388

seq1  AAGGTAGGCTGGTGTTTTCTCCTTTAGGCAAAGCTGTCATAGATTAACCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGGCTGGTGTTTTCTCCTTTAGGCAAAGCTGTCATAGATTAACCC  438

seq1  CAATCTTAGCCCTTTTCTGGTGCAGGTGAGAGGGCTGCATGCATTAGGGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTAGCCCTTTTCTGGTGCAGGTGAGAGGGCTGCATGCATTAGGGC  488

seq1  CCTTTGCTCCATCTTCCTCTGGTCGGGCTTTGGTAAGGGGTGATGGTAGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTCCATCTTCCTCTGGTCGGGCTTTGGTAAGGGGTGATGGTAGC  538

seq1  AAGGACTGCTGTCTGCTGTGGTGTGCCACGCCCTGGGCAGACCACCAATA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTGCTGTCTGCTGTGGTGTGCCACGCCCTGGGCAGACCACCAATA  588

seq1  TTTCAGTACTGATGCTCCACTATCTACAGTCTGAGGAAGTGGGCTCTGGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTACTGATGCTCCACTATCTACAGTCTGAGGAAGTGGGCTCTGGT  638

seq1  GAGTTGCGTTGGGCAGCCCCTTGTTGGCCCTCACCGTCTCCTTTAGGCTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCGTTGGGCAGCCCCTTGTTGGCCCTCACCGTCTCCTTTAGGCTG  688

seq1  GGCCTGTGGGCAAGAGGAAGCAACACGCTCAGGCTACAATGTGCTGCTTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGGGCAAGAGGAAGCAACACGCTCAGGCTACAATGTGCTGCTTG  738

seq1  CTGGGCCAGGAAATACTGCATATTGGGCCCAGGAGTCAGTGTTTTCCCTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCAGGAAATACTGCATATTGGGCCCAGGAGTCAGTGTTTTCCCTG  788

seq1  GCACCTTGGCACTGTGGCAGGCTCTCAAAGTCCAATCCCAGACATGGCCA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTGGCACTGTGGCAGGCTCTCAAAGTCCAATCCCAGACATGGCCA  838

seq1  AGCATGGGAGCCCCACAAAAAGAGGCTGTGCTAGGAGCTGGATGAGGTCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGGAGCCCCACAAAAAGAGGCTGTGCTAGGAGCTGGATGAGGTCT  888

seq1  TGGGTTCCAAGCTAGGGCTTCTGAGGAGGGAGGGACACTTAGGGATGCCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCCAAGCTAGGGCTTCTGAGGAGGGAGGGACACTTAGGGATGCCT  938

seq1  GCCCGTTCTATCTGTACTTATGTTGAAGTAATGTTGTTGGACCAGGGTCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTTCTATCTGTACTTATGTTGAAGTAATGTTGTTGGACCAGGGTCA  988

seq1  GACAGCCTTTGCCAGTCTGATCCCATCACAGGGGAAAGTCTGGACTTGTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCTTTGCCAGTCTGATCCCATCACAGGGGAAAGTCTGGACTTGTG  1038

seq1  GCCATTCACCTTCCACTTGAAAACAAACTCACATTTGCTGTGGAAAAATG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCACCTTCCACTTGAAAACAAACTCACATTTGCTGTGGAAAAATG  1088

seq1  GCTGCAAAAGAAAGAAACCTGAATTC  1117
      ||||||||||||||||||||||||||
seq2  GCTGCAAAAGAAAGAAACCTGAATTC  1114

seq1: chr12_114259830_114260739
seq2: B6Ng01-141K10.g_69_972

seq1  GAATTCACTTTATGGCTCAGGATGTGGTCAGCTCTCATGCATGGTTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTATGGCTCAGGATGTGGTCAGCTCTCATGCATGGTTTGTC  50

seq1  TGTGCCAGAGGTGTATCTGGCAGCTGAGAGGGCATGGCTTTCTGTGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAGAGGTGTATCTGGCAGCTGAGAGGGCATGGCTTTCTGTGTGTC  100

seq1  CACTGGGGCAAGCTTGGTTTGTTACAGTTCTCAAATCTGTTTGCTTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGGCAAGCTTGGTTTGTTACAGTTCTCAAATCTGTTTGCTTTTGG  150

seq1  GATATTTCAGACATGAATTAAAACATAACCTGAGAAAATGTTGTCTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTCAGACATGAATTAAAACATAACCTGAGAAAATGTTGTCTATTT  200

seq1  CTCTTACTCTATGAGTCTTTGTTCTGTTCATTTTTGGAGTGTGTTGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACTCTATGAGTCTTTGTTCTGTTCATTTTTGGAGTGTGTTGCTAT  250

seq1  ATAAATGTGCATTTAGAGGTAGAGTGCCTTCTAGGTGTGAACTTCTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTGCATTTAGAGGTAGAGTGCCTTCTAGGTGTGAACTTCTTAGT  300

seq1  TATGTTTTTGTTTCTATGTTGATTTGGATAGTGGAATAGCTAGAGAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTGTTTCTATGTTGATTTGGATAGTGGAATAGCTAGAGAAACT  350

seq1  TTGATTTGGGTAGTAGAGTTTGCCTGTTAAATCATCTTTTTCTTTTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTGGGTAGTAGAGTTTGCCTGTTAAATCATCTTTTTCTTTTTAAT  400

seq1  GACATCTTCTTATTCATTGTATACATGCTAGAGGCACCTTGGTGCGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTTCTTATTCATTGTATACATGCTAGAGGCACCTTGGTGCGTGGA  450

seq1  GATCAGAAGACGGCTTGCAGGAGTCAGTTTCCCTTCCCACCCTGTGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAAGACGGCTTGCAGGAGTCAGTTTCCCTTCCCACCCTGTGGGAT  500

seq1  GAGGGAGAGAGCGTGGGTCGTCAGACTTTGCACAGGCACCTTACCCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAGAGCGTGGGTCGTCAGACTTTGCACAGGCACCTTACCCACTG  550

seq1  ATGCAACTCAATGGCTCAACTTTAAAAACAGAACAAAAGCTGATTCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACTCAATGGCTCAACTTTAAAAACAGAACAAAAGCTGATTCAAAA  600

seq1  AAAAAAAGATTTATTTATATGAGTACACTGTAGCTGTCTTCAGACACACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGATTTATTTATATGAGTACACTGTAGCTGTCTTCAGACACACC  650

seq1  AGAAGGTGGCATCAGATCCCATTACAGAT-GGTTGTGAGCCAACATGTGG  699
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAAGGTGGCATCAGATCCCATTACAGATGGGTTGTGAGCCAACATGTGG  700

seq1  TTGCTGGGAATTGAACTCAGGACCTCTGGAAAGGCAGTCAGTGCTCTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGAATTGAACTCAGGACCTCTGGAAAGGCAGTCAGTGCTCTTAA  750

seq1  CCACTGAGCCATCTCTCCAGCTCCACCTTCTTTCTTTCTTTCTTTTTTTT  799
      |||||||||||||||| |||||||||||||||||||||||||      ||
seq2  CCACTGAGCCATCTCTTCAGCTCCACCTTCTTTCTTTCTTTC------TT  794

seq1  TTTTTTTTTTTTTTTTTTTTGAGACAGGGCTTCATATATCT-CAGGCTGG  848
      ||||||||||||||||||| ||||||||| ||||| ||| |  |||  ||
seq2  TTTTTTTTTTTTTTTTTTTGGAGACAGGGTTTCATTTATTTATAGGTGGG  844

seq1  CCTAGAACTCACTAGCTGTGGATGACCCTTAACCCCTGAGGCTTC-TGTA  897
      | | ||| ||  |||||| |||| |||||| |||||||||| ||| ||||
seq2  CTTTGAATTC-TTAGCTGGGGAT-ACCCTTTACCCCTGAGGGTTCTTGTA  892

seq1  ACCAAACTCAGGG  910
      | |||||||||||
seq2  A-CAAACTCAGGG  904